CHS337
Library CH
(Link to library)
Clone ID CHS337
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11294-1|Contig-U13169-1
Original site URL
Representative seq. ID CHS337P
(Link to Original site)
Representative DNA sequence
>CHS337 (CHS337Q) /CSM/CH/CHS3-B/CHS337Q.Seq.d/
AAAATAATATGTGCTTATTTATGTACTAATATAATCTTATTCATAATAATATTAATAAAT
AAATAAATTATTAAATAATTAAATAATTTTTTTTTTTTTTNCTNCCNAAAAAAAAAAAAA
AAAAAAANCCCNCCCCNTTTTTTNNAAAAAAAAXXXXXXXXXXAACTAGTAACAANGANA
CAGTCACNACAAATCGGANCATATAGCCTATAATNATANTAATNATAATAATAATAATTN
ANGTNATAGTNAATNATAATAAATAAATAATACTTTAAATTATTAAT
sequence update 2002.10.25
Translated Amino Acid sequence
kiicaylctniilfiiilink*iik*LNNFFFFXXXKKKKKKXPPXFXXKK---

---LVTXXQSXQIGXYSL*xx*x****xxx*xxiink*yfkll


Translated Amino Acid sequence (All Frames)
Frame A:
kiicaylctniilfiiilink*iik*LNNFFFFXXXKKKKKKXPPXFXXKK---

---n**qxxshxksxhiaynxxnxnnnnxxxsxx**inntlny*

Frame B:
k*yvliyvli*sys**y**inkllnn*iiffffxxxkkkkkkxxpxfxkk---

---tsnxxtvttnrxi*pixixxiiiiixvivnxnk*iil*iin

Frame C:
nnmclfmy*ynlihnnink*iny*iik*ffffxlpkkkkkkxpxpffxkk---

---LVTXXQSXQIGXYSL*xx*x****xxx*xxiink*yfkll

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS337 (CHS337Q) /CSM/CH/CHS3-B/CHS337Q.Seq.d/ 68 8e-11
CHP422 (CHP422Q) /CSM/CH/CHP4-A/CHP422Q.Seq.d/ 44 0.001
AHK535 (AHK535Q) /CSM/AH/AHK5-B/AHK535Q.Seq.d/ 44 0.001
AHI602 (AHI602Q) /CSM/AH/AHI6-A/AHI602Q.Seq.d/ 44 0.001
AHE384 (AHE384Q) /CSM/AH/AHE3-D/AHE384Q.Seq.d/ 44 0.001
SSJ284 (SSJ284Q) /CSM/SS/SSJ2-D/SSJ284Q.Seq.d/ 38 0.069
VSI710 (VSI710Q) /CSM/VS/VSI7-A/VSI710Q.Seq.d/ 36 0.27
VSD658 (VSD658Q) /CSM/VS/VSD6-C/VSD658Q.Seq.d/ 36 0.27
VSD512 (VSD512Q) /CSM/VS/VSD5-A/VSD512Q.Seq.d/ 36 0.27
VSB623 (VSB623Q) /CSM/VS/VSB6-A/VSB623Q.Seq.d/ 36 0.27

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC112077|AC112077.4 Rattus norvegicus clone CH230-142J7, *** SEQUENCING IN PROGRESS***, 3 unordered pieces. 44 1.5 1
AC109688|AC109688.4 Rattus norvegicus clone CH230-251F5, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 1.5 1
AC106392|AC106392.4 Rattus norvegicus clone CH230-140C8, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 1.5 1
CG727190|CG727190.1 1119093F05.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence. 44 1.5 1
CG711657|CG711657.1 1119022C08.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence. 44 1.5 1
BZ158667|BZ158667.1 CH230-289O2.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-289O2, DNA sequence. 44 1.5 1
AZ572415|AZ572415.1 305PvG07 Pv MBN #30 Plasmodium vivax genomic 3', DNA sequence. 44 1.5 1
AL739919|AL739919.1 Danio rerio genomic clone DKey-7L12, genomic survey sequence. 44 1.5 1
CW928277|CW928277.1 EDCBQ46TF A. castellanii, 6-8 kb library from total genomic DNA Acanthamoeba castellanii genomic clone EDCBQ46, genomic survey sequence. 44 1.5 1
CW918360|CW918360.1 EDCA491TF A. castellanii, 6-8 kb library from total genomic DNA Acanthamoeba castellanii genomic clone EDCA491, genomic survey sequence. 44 1.5 1
dna update 2005.11.29
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 141,726,181
protein update 2009. 4.13
PSORT

psg: 0.29 gvh: 0.46 alm: 0.64 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for CHS337 is nuc

5' end seq. ID CHS337F
5' end seq.
>CHS337F.Seq
AAAATAATATGTGCTTATTTATGTACTAATATAATCTTATTCATAATAATATTAATAAAT
AAATAAATTATTAAATAATTAAATAATTTTTTTTTTTTTTNCTNCCNAAAAAAAAAAAAA
AAAAAAANCCCNCCCCNTTTTTTNNAAAAAAAANNNNNNNNNN
Length of 5' end seq. 163
3' end seq. ID CHS337Z
3' end seq.
>CHS337Z.Seq
NNNNNNNNNNAACTAGTAACAANGANACAGTCACNACAAATCGGANCATATAGCCTATAA
TNATANTAATNATAATAATAATAATTNANGTNATAGTNAATNATAATAAATAAATAATAC
TTTAAATTATTAAT
Length of 3' end seq. 134
Connected seq. ID CHS337P
Connected seq.
>CHS337P.Seq
AAAATAATATGTGCTTATTTATGTACTAATATAATCTTATTCATAATAATATTAATAAAT
AAATAAATTATTAAATAATTAAATAATTTTTTTTTTTTTTNCTNCCNAAAAAAAAAAAAA
AAAAAAANCCCNCCCCNTTTTTTNNAAAAAAAA----------AACTAGTAACAANGANA
CAGTCACNACAAATCGGANCATATAGCCTATAATNATANTAATNATAATAATAATAATTN
ANGTNATAGTNAATNATAATAAATAAATAATACTTTAAATTATTAAT
Length of connected seq. 277
Full length Seq ID -
Full length Seq. -
Length of full length seq. -