CHS330
Library CH
(Link to library)
Clone ID CHS330
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16333-1
Original site URL
Representative seq. ID CHS330P
(Link to Original site)
Representative DNA sequence
>CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/
TGGCCTACTGGAAAAATTTTATTTATAGCAAAATAACTAATATATTGTAAAATAATTTTA
GAATATTTAAAAAATATTCATATAATAATAAATAAAAATGAAAGAATATAAAAAAATTAT
ATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAAAACCATCTCTTTCAGATGA
CCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCACTACCAACGACATCGGCAGC
ATCAACAGCAAAGGTAACAACAACAACCACAACTACAGGATCACCAGCATCAACCACAAC
TACAGGAGCACCAACATCAACTACAGGAGCATCAACATCAACTACAGGAGCACCATCATC
ATCATCTTCATCGAATGAAACAACTCCAACTGCAACACCAACTAAAAAACCTGTAACACC
AACACCATCATCAACATCATCATCATCATCATCATCTGAAGTAACATCATCCTCATCCGA
ATCATCAGCTGGTGAACATCCATGTGCAACTGATGTTTTTGATAGTATGAGTAATTCTGG
TAATTTCCAAGAATCAGTTTCATCATCATCAAATGATCCATATGATTGTTATCTTCAAAG
TTCAAATGTAAAATTCACAAAATCTGGTACTGGTACAXXXXXXXXXXATTCAATGGGATT
TTAATCACTGGTGCCTCTAATGAATTTTATGATCTAATCTATATGGATGATCTTTACTTT
TCAAATGGTACGGTTTGTATGGAAGAGTCATCGGAATATCCATACTATCAACTTGGTCAA
TTATTAAATGGTGCTTCCGATCAGTATAACACTGGTAATGTAAATTTCAAATCCGTTAGT
AAACTTTTTANAGGTTTTCCAACTATCGAGTATCAATTATACAATAATTACAAAGCAATC
ATNTCAATGATGAATGGNACAATCGATACATNTCAATATGATNTTTTGAGATTGAATTTN
TTNTTCCTTCATGATCAATNTTATAATAATCCAAATCCAAGTATTGACTNTAGTGAAGTT
GCAAACTCTTTCTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTA
CCTTGTGTTGGTTTATCNCCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAA
CTTTTAATTCCTTTCTCTGATCTTCAAGTTTATCCAAATGCTNTTATCAGTAGTATCNCT
TTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCTTTATTGGTGATATTTCTGCTGGT
AATTTTGTACCNCCATATAAAGTACTANAGGATGGTTCAAACGCTTTCAAATTATTATCA
AATATTTATTTATTATTATTAATTTTTATAATTTCTTTATTATTTATCTAAACAAAAAAA
AAACAAATAAATAAAAAACATA
sequence update 2002.10.25
Translated Amino Acid sequence
gllekfyl*qnn*yivk*f*ni*kifi***IKMKEYKKIILYSFLVFLILCFAKPSLSDD
PLTTSTTTTTATALPTTSAASTAKVTTTTTTTGSPASTTTTGAPTSTTGASTSTTGAPSS
SSSSNETTPTATPTKKPVTPTPSSTSSSSSSSEVTSSSSESSAGEHPCATDVFDSMSNSG
NFQESVSSSSNDPYDCYLQSSNVKFTKSGTGT---

---FNGILITGASNEFYDLIYMDDLYFSNGTVCMEESSEYPYYQLGQLLNGASDQYNTGN
VNFKSVSKLFXGFPTIEYQLYNNYKAIXSMMNGTIDTXQYDXLRLNXXFLHDQXYNNPNP
SIDXSEVANSFFLDXQICITVQVVGNLPCVGLSPYLGGQVPNAVWVELLIPFSDLQVYPN
AXISSIXFQTQVQDHQGVFFIGDISAGNFVPPYKVLXDGSNAFKLLSNIYLLLLIFIISL
LFI*tkkkqinkkh


Translated Amino Acid sequence (All Frames)
Frame A:
wptgkilfiak*liyckiileylknihiiinkneri*knyii*ffsffnfmfcktisfr*
pfnnfnnnnnsncttndigsinskgnnnnhnyritsinhnyrstninyrsininyrstii
iifie*nnsncntn*ktcntntiiniiiiiii*sniiliriisw*tsmcn*cf**ye*fw
*fprisfiiik*si*llsskfkckihkiwywy---

---iqwdfnhwcl**il*snlyg*sllfkwyglygrvigisilstwsiikwcfrsv*hw*
ckfqir**tfxrfsnyrvsiiq*lqsnhxndewxnryxsi*xfeiefxxps*sxl**sks
ky*l**scklflfrxsnlyyrssgw*ftlcwfixilgwssskcsmg*tfnsfl*ssslsk
cxyq*yxfpnsstrsprcflyw*yfcw*fctxi*stxgwfkrfqiiikylfiiinfynff
iiylnkkktnk*kt

Frame B:
gllekfyl*qnn*yivk*f*ni*kifi***IKMKEYKKIILYSFLVFLILCFAKPSLSDD
PLTTSTTTTTATALPTTSAASTAKVTTTTTTTGSPASTTTTGAPTSTTGASTSTTGAPSS
SSSSNETTPTATPTKKPVTPTPSSTSSSSSSSEVTSSSSESSAGEHPCATDVFDSMSNSG
NFQESVSSSSNDPYDCYLQSSNVKFTKSGTGT---

---FNGILITGASNEFYDLIYMDDLYFSNGTVCMEESSEYPYYQLGQLLNGASDQYNTGN
VNFKSVSKLFXGFPTIEYQLYNNYKAIXSMMNGTIDTXQYDXLRLNXXFLHDQXYNNPNP
SIDXSEVANSFFLDXQICITVQVVGNLPCVGLSPYLGGQVPNAVWVELLIPFSDLQVYPN
AXISSIXFQTQVQDHQGVFFIGDISAGNFVPPYKVLXDGSNAFKLLSNIYLLLLIFIISL
LFI*tkkkqinkkh

Frame C:
aywknfiyskitnil*nnfrifkkysynnk*k*knikklyyivf*ff*fyvlqnhlfqmt
l*qlqqqqqqqlhyqrhrqhqqqr*qqqpqlqdhqhqpqlqehqhqlqehqhqlqehhhh
hlhrmkqlqlqhqlknl*hqhhhqhhhhhhhlk*hhphpnhqlvnihvqlmfliv*vilv
isknqfhhhqmihmivifkvqm*nsqnlvlv---

---smgf*slvplmnfmi*siwmiftfqmvrfvwkshrnihtinlvny*mvlpisitlvm
*isnplvnflxvfqlssinytiitkqsxq**mxqsihxnmxf*d*ixxsfminxiiiqiq
vltxvklqtlsf*xfkfvlpfkwlviylvlvyxhtwvvkfqmqyglnf*flslifkfiqm
llsvvslsklkykitkvfsllvifllvilyxhikyxrmvqtlsnyyqifiyyy*fl*fly
ylskqkknk*ikni

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS330 (CHS330Q) /CSM/CH/CHS3-B/CHS330Q.Seq.d/ 1439 0.0
CHI503 (CHI503Q) /CSM/CH/CHI5-A/CHI503Q.Seq.d/ 1126 0.0
CHS395 (CHS395Q) /CSM/CH/CHS3-D/CHS395Q.Seq.d/ 1094 0.0
AHM661 (AHM661Q) /CSM/AH/AHM6-C/AHM661Q.Seq.d/ 1080 0.0
CHR283 (CHR283Q) /CSM/CH/CHR2-D/CHR283Q.Seq.d/ 1068 0.0
SSJ359 (SSJ359Q) /CSM/SS/SSJ3-C/SSJ359Q.Seq.d/ 1055 0.0
SHJ588 (SHJ588Q) /CSM/SH/SHJ5-D/SHJ588Q.Seq.d/ 1039 0.0
AHM266 (AHM266Q) /CSM/AH/AHM2-C/AHM266Q.Seq.d/ 1039 0.0
CHM140 (CHM140Q) /CSM/CH/CHM1-B/CHM140Q.Seq.d/ 1027 0.0
AHE556 (AHE556Q) /CSM/AH/AHE5-C/AHE556Q.Seq.d/ 944 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence. 40 0.006 2
AC126867|AC126867.4 Rattus norvegicus clone CH230-49B18, WORKING DRAFT SEQUENCE, 1 ordered piece. 54 0.008 1
AC095285|AC095285.5 Rattus norvegicus clone CH230-11A8, WORKING DRAFT SEQUENCE, 1 ordered piece. 54 0.008 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 38 0.013 6
BP663205|BP663205.1 Arabidopsis thaliana cDNA clone:RAFL21-47-C10, 3' end. 38 0.024 2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 44 0.027 6
DT505060|DT505060.1 WS01315.B21_O02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS01315_O02 3', mRNA sequence. 38 0.096 2
BJ008043|BJ008043.1 Oryzias latipes cDNA clone:MF01SSA114H01 : 5' end, single read. 34 0.097 2
CN518273|CN518273.1 GQ0093.B3_H17 GQ009 Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA clone GQ0093_H17 5', mRNA sequence. 38 0.100 2
BI516839|BI516839.1 BB160023B10E11.5 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160023B10E11 5', mRNA sequence. 48 0.10 2
dna update 2005.11.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001055_503(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 36 2.8

protein update 2008.11.10
PSORT

psg: 1.00 gvh: 0.82 alm: 0.19 top: 0.20 tms: 0.07 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 1.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: extracellular, including cell wall
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for CHS330 is pla

5' end seq. ID CHS330F
5' end seq.
>CHS330F.Seq
TGGCCTACTGGAAAAATTTTATTTATAGCAAAATAACTAATATATTGTAAAATAATTTTA
GAATATTTAAAAAATATTCATATAATAATAAATAAAAATGAAAGAATATAAAAAAATTAT
ATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAAAACCATCTCTTTCAGATGA
CCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCACTACCAACGACATCGGCAGC
ATCAACAGCAAAGGTAACAACAACAACCACAACTACAGGATCACCAGCATCAACCACAAC
TACAGGAGCACCAACATCAACTACAGGAGCATCAACATCAACTACAGGAGCACCATCATC
ATCATCTTCATCGAATGAAACAACTCCAACTGCAACACCAACTAAAAAACCTGTAACACC
AACACCATCATCAACATCATCATCATCATCATCATCTGAAGTAACATCATCCTCATCCGA
ATCATCAGCTGGTGAACATCCATGTGCAACTGATGTTTTTGATAGTATGAGTAATTCTGG
TAATTTCCAAGAATCAGTTTCATCATCATCAAATGATCCATATGATTGTTATCTTCAAAG
TTCAAATGTAAAATTCACAAAATCTGGTACTGGTACANNNNNNNNNN
Length of 5' end seq. 647
3' end seq. ID CHS330Z
3' end seq.
>CHS330Z.Seq
NNNNNNNNNNATTCAATGGGATTTTAATCACTGGTGCCTCTAATGAATTTTATGATCTAA
TCTATATGGATGATCTTTACTTTTCAAATGGTACGGTTTGTATGGAAGAGTCATCGGAAT
ATCCATACTATCAACTTGGTCAATTATTAAATGGTGCTTCCGATCAGTATAACACTGGTA
ATGTAAATTTCAAATCCGTTAGTAAACTTTTTANAGGTTTTCCAACTATCGAGTATCAAT
TATACAATAATTACAAAGCAATCATNTCAATGATGAATGGNACAATCGATACATNTCAAT
ATGATNTTTTGAGATTGAATTTNTTNTTCCTTCATGATCAATNTTATAATAATCCAAATC
CAAGTATTGACTNTAGTGAAGTTGCAAACTCTTTCTTTTTAGATNTTCAAATTTGTATTA
CCGTTCAAGTGGTTGGTAATTTACCTTGTGTTGGTTTATCNCCATACTTGGGTGGTCAAG
TTCCAAATGCAGTATGGGTTGAACTTTTAATTCCTTTCTCTGATCTTCAAGTTTATCCAA
ATGCTNTTATCAGTAGTATCNCTTTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCT
TTATTGGTGATATTTCTGCTGGTAATTTTGTACCNCCATATAAAGTACTANAGGATGGTT
CAAACGCTTTCAAATTATTATCAAATATTTATTTATTATTATTAATTTTTATAATTTCTT
TATTATTTATCTAAACAAAAAAAAAACAAATAAATAAAAAACATA
Length of 3' end seq. 765
Connected seq. ID CHS330P
Connected seq.
>CHS330P.Seq
TGGCCTACTGGAAAAATTTTATTTATAGCAAAATAACTAATATATTGTAAAATAATTTTA
GAATATTTAAAAAATATTCATATAATAATAAATAAAAATGAAAGAATATAAAAAAATTAT
ATTATATAGTTTTTTAGTTTTTTTAATTTTATGTTTTGCAAAACCATCTCTTTCAGATGA
CCCTTTAACAACTTCAACAACAACAACAACAGCAACTGCACTACCAACGACATCGGCAGC
ATCAACAGCAAAGGTAACAACAACAACCACAACTACAGGATCACCAGCATCAACCACAAC
TACAGGAGCACCAACATCAACTACAGGAGCATCAACATCAACTACAGGAGCACCATCATC
ATCATCTTCATCGAATGAAACAACTCCAACTGCAACACCAACTAAAAAACCTGTAACACC
AACACCATCATCAACATCATCATCATCATCATCATCTGAAGTAACATCATCCTCATCCGA
ATCATCAGCTGGTGAACATCCATGTGCAACTGATGTTTTTGATAGTATGAGTAATTCTGG
TAATTTCCAAGAATCAGTTTCATCATCATCAAATGATCCATATGATTGTTATCTTCAAAG
TTCAAATGTAAAATTCACAAAATCTGGTACTGGTACA----------ATTCAATGGGATT
TTAATCACTGGTGCCTCTAATGAATTTTATGATCTAATCTATATGGATGATCTTTACTTT
TCAAATGGTACGGTTTGTATGGAAGAGTCATCGGAATATCCATACTATCAACTTGGTCAA
TTATTAAATGGTGCTTCCGATCAGTATAACACTGGTAATGTAAATTTCAAATCCGTTAGT
AAACTTTTTANAGGTTTTCCAACTATCGAGTATCAATTATACAATAATTACAAAGCAATC
ATNTCAATGATGAATGGNACAATCGATACATNTCAATATGATNTTTTGAGATTGAATTTN
TTNTTCCTTCATGATCAATNTTATAATAATCCAAATCCAAGTATTGACTNTAGTGAAGTT
GCAAACTCTTTCTTTTTAGATNTTCAAATTTGTATTACCGTTCAAGTGGTTGGTAATTTA
CCTTGTGTTGGTTTATCNCCATACTTGGGTGGTCAAGTTCCAAATGCAGTATGGGTTGAA
CTTTTAATTCCTTTCTCTGATCTTCAAGTTTATCCAAATGCTNTTATCAGTAGTATCNCT
TTCCAAACTCAAGTACAAGATCACCAAGGTGTTTTCTTTATTGGTGATATTTCTGCTGGT
AATTTTGTACCNCCATATAAAGTACTANAGGATGGTTCAAACGCTTTCAAATTATTATCA
AATATTTATTTATTATTATTAATTTTTATAATTTCTTTATTATTTATCTAAACAAAAAAA
AAACAAATAAATAAAAAACATA
Length of connected seq. 1392
Full length Seq ID -
Full length Seq. -
Length of full length seq. -