>CHS318 (CHS318Q) /CSM/CH/CHS3-A/CHS318Q.Seq.d/
XXXXXXXXXXTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATG
CTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAAC
AACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACT

---AVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDEN
EQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVE
QLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQ
QSPDQIKNQLKNIQHEQ

Frame A:
---AVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDEN
EQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVE
QLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQ
QSPDQIKNQLKNIQHEQ


Frame B:
---l*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkm
nkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnksln
nlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnn
nlltklkin*kifnmnn


Frame C:
---ckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*
trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*t
t*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrett
is*pn*ksikkyst*tt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                        573   e-162
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        573   e-162
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/                        573   e-162
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/                        573   e-162
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        573   e-162
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        573   e-162
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/                        573   e-162
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        573   e-162
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        573   e-162
SHL817 (SHL817Q) /CSM/SH/SHL8-A/SHL817Q.Seq.d/                        573   e-162

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   573   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   3e-25  1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.009  7
AB006702|AB006702.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPO12.    40   0.17   4
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.20   10
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.21   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.21   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.21   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.21   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.21   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   241   1e-62
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   1.1
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   1.9
(P47048) RecName: Full=Uncharacterized protein YJL049W;  &AY6926...    34   3.3
AE017343_653(AE017343|pid:none) Cryptococcus neoformans var. neo...    34   3.3
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    33   4.3
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   4.3
AP009049_1790(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    33   5.6
AC009323_10(AC009323|pid:none) Arabidopsis thaliana chromosome I...    33   5.6
AP009240_1649(AP009240|pid:none) Escherichia coli SE11 DNA, comp...    33   5.6

 psg: 0.81  gvh: 0.16  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for CHS318 is nuc

>CHS318Z.Seq
NNNNNNNNNNTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATA
ATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAA
ATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAA
ATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAG
AGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATC
AACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTG
AACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTC
AACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATG
CTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAAC
AACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACT