CHS301
Library CH
(Link to library)
Clone ID CHS301
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID CHS301P
(Link to Original site)
Representative DNA sequence
>CHS301 (CHS301Q) /CSM/CH/CHS3-A/CHS301Q.Seq.d/
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTTACACTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAGT
GXXXXXXXXXXTGCTGATATGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAAT
TCATTGGCAGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCA
AGTGATAAAGGTTTCTCGATTACAACACTTAAAACTCTACATATGGAATTAAGTAAGAGT
GGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTT
GCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAA
ACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAA
TCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAA
TTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCA
AAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGGT
GGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAG
TTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTA
GTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAG
AAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAANAAAAA
GNAAGNACAAAAAGAAA
sequence update 2002.10.25
Translated Amino Acid sequence
qw*fl*l*ylfss*YXNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVG
QQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGN
GKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFTLKITNWLKKSDSAS
---

---ADMVYNVSSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTLKTLHMELSKSG
QSIGFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKS
DQTIFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTGG
CSTHKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKK
NKNKKNKSKKTKEQINKXKXXTKR


Translated Amino Acid sequence (All Frames)
Frame A:
qw*fl*l*ylfss*YXNRPSCSSLFSSATLQTLGSSPRCEYTASNILMVTLGSGESVSVG
QQLEFSQGGITSKDGSKNNYQTITLEPPQDSTPVVDIKAPNVLDSCSPLVLDASHSKGGN
GKALTYDWSVSGADTNTQLNNLLDQNNATITIPNDLLSSGQTYTFTLKITNWLKKSDSAS
---

---c*ygl*cffrhfsgiqfigrwysskncnw*rtiysck**rfldynt*nstygik*ew
sidwfqkg**rsis*w*ktcfhskiqysikcfike*iktnl*nhw*tnyssikysfqs*i
*snhfpkncft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrw
lfnp*srw*ysm*m*psyrvwfn*ickilskhldhywtsswwccicscngwyccigkeke
kqkqkeqikenqrtnqqxkxkxkkk

Frame B:
ngnffscdisspvdtxiglhvvlfsllqlyklwvvlqdvnillqtf*wlhwvvvkvyqla
nnwnflkveslqkmvvriiikl*hwnhhkiqlqw*ilklqmf*ihvvhwy*mlviqkvvm
ekh*pmigrlvgqiqtln*iiywikimqp*qfqmifchlvklillhlksqig*rnliaqv
---

---ADMVYNVSSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTLKTLHMELSKSG
QSIGFKKDDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKS
DQTIFPKTVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTGG
CSTHKVDGNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKK
NKNKKNKSKKTKEQINKXKXXTKR

Frame C:
mvislvvisllqlilx*afm*fsflfcnftnfg*fskm*iycfkhsngyig*w*kciswp
tigifsrwnhfkrw**e*lsnynigtttrfnssgry*sskcfrfm*sigirc*sfkrw*w
ksinl*lvg*wgrykhsik*sigsk*cnhnnsk*sfviwsnlyfyt*nhklvkei**rk-
--

---liwfimflqtf*wypihwqmvffkelqlvknhlqlqvikvsrlqhlklyiwn*vrvv
nrlvskrmmkvnllmvknllslqnsvfhqvfyqrin*nkplkslvn*lqfhqifisiinl
ikpfsqklfhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*qvv
vqpik*mvifnvnvtilqslv*lnlqnplktfgslldq*lvvlylqlqwlvllyw*rerk
tktkrtnqrkpknkstxkkxxqke

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS301 (CHS301Q) /CSM/CH/CHS3-A/CHS301Q.Seq.d/ 2413 0.0
CHR576 (CHR576Q) /CSM/CH/CHR5-D/CHR576Q.Seq.d/ 1370 0.0
CHI747 (CHI747Q) /CSM/CH/CHI7-B/CHI747Q.Seq.d/ 1370 0.0
CHI163 (CHI163Q) /CSM/CH/CHI1-C/CHI163Q.Seq.d/ 1370 0.0
CHR150 (CHR150Q) /CSM/CH/CHR1-C/CHR150Q.Seq.d/ 1366 0.0
CHI858 (CHI858Q) /CSM/CH/CHI8-C/CHI858Q.Seq.d/ 1366 0.0
CHR330 (CHR330Q) /CSM/CH/CHR3-B/CHR330Q.Seq.d/ 1362 0.0
CHL279 (CHL279Q) /CSM/CH/CHL2-D/CHL279Q.Seq.d/ 1362 0.0
CHI765 (CHI765Q) /CSM/CH/CHI7-C/CHI765Q.Seq.d/ 1362 0.0
CHM885 (CHM885Q) /CSM/CH/CHM8-D/CHM885Q.Seq.d/ 1360 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces. 48 0.48 1
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces. 48 0.48 1
AC103541|AC103541.6 Homo sapiens BAC clone RP11-818M13 from 4, complete sequence. 48 0.48 1
AC097518|AC097518.2 Homo sapiens BAC clone RP11-487E13 from 4, complete sequence. 48 0.48 1
AJ410884|AJ410884.1 Influenza A virus (swine/Cotes d'Armor/1515/99 (H1N1)) partial N1NA gene for Neuraminidase, genomic RNA. 42 0.91 2
AJ410883|AJ410883.1 Influenza A virus (swine/Cotes d'Armor/1482/99 (H1N1)) partial N1NA gene for Neuraminidase, genomic RNA. 42 0.94 2
BI347313|BI347313.1 fbn-ek036 Cattle pUC18 mammary gland library Bos taurus cDNA, mRNA sequence. 46 1.9 1
CZ857443|CZ857443.1 OC__Ba0249B12.r OC__Ba Oryza coarctata genomic clone OC__Ba0249B12 3', genomic survey sequence. 46 1.9 1
AC092422|AC092422.3 Homo sapiens chromosome 3 clone RP11-537O8, complete sequence. 46 1.9 1
CC537472|CC537472.1 CH240_416L18.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_416L18, genomic survey sequence. 42 5.3 2
dna update 2005.11.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF203419_1(EF203419|pid:none) Strongylocentrotus purpuratus rece... 52 6e-05
AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve... 49 3e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F... 49 3e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c... 49 3e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr... 49 3e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind... 48 7e-04
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (... 46 0.003
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet... 46 0.003
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre... 45 0.006
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec... 45 0.007
protein update 2009. 4.13
PSORT

psg: 0.90 gvh: 0.59 alm: 0.22 top: 1.17 tms: 0.07 mit: 0.46 mip: 0.05
nuc: 0.10 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
12.0 %: vesicles of secretory system
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CHS301 is cyt

5' end seq. ID CHS301F
5' end seq.
>CHS301F.Seq
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTTACACTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAGT
GNNNNNNNNNN
Length of 5' end seq. 551
3' end seq. ID CHS301Z
3' end seq.
>CHS301Z.Seq
NNNNNNNNNNTGCTGATATGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAATT
CATTGGCAGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAA
GTGATAAAGGTTTCTCGATTACAACACTTAAAACTCTACATATGGAATTAAGTAAGAGTG
GTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTG
CTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAA
CCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAAT
CTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAAT
TATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAA
AAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGGTG
GTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGT
TTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAG
TTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGA
AAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAANAAAAAG
NAAGNACAAAAAGAAA
Length of 3' end seq. 796
Connected seq. ID CHS301P
Connected seq.
>CHS301P.Seq
CAATGGTAATTTCTTTAGTTGTGATATCTCTTCTCCAGTTGATACTTNAATAGGCCTTCA
TGTAGTTCTCTTTTCTCTTCTGCAACTTTACAAACTTTGGGTAGTTCTCCAAGATGTGAA
TATACTGCTTCAAACATTCTAATGGTTACATTGGGTAGTGGTGAAAGTGTATCAGTTGGC
CAACAATTGGAATTTTCTCAAGGTGGAATCACTTCAAAAGATGGTAGTAAGAATAATTAT
CAAACTATAACATTGGAACCACCACAAGATTCAACTCCAGTGGTAGATATTAAAGCTCCA
AATGTTTTAGATTCATGTAGTCCATTGGTATTAGATGCTAGTCATTCAAAAGGTGGTAAT
GGAAAAGCATTAACCTATGATTGGTCGGTTAGTGGGGCAGATACAAACACTCAATTAAAT
AATCTATTGGATCAAAATAATGCAACCATAACAATTCCAAATGATCTTTTGTCATCTGGT
CAAACTTATACTTTTACACTTAAAATCACAAATTGGTTAAAGAAATCTGATAGCGCAAGT
G----------TGCTGATATGGTTTATAATGTTTCTTCAGACATTTTAGTGGTATCCAAT
TCATTGGCAGATGGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCA
AGTGATAAAGGTTTCTCGATTACAACACTTAAAACTCTACATATGGAATTAAGTAAGAGT
GGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTT
GCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAA
ACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAA
TCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAA
TTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCA
AAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGGT
GGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAG
TTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTA
GTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAG
AAAAACAAAAACAAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAANAAAAA
GNAAGNACAAAAAGAAA
Length of connected seq. 1327
Full length Seq ID -
Full length Seq. -
Length of full length seq. -