CHS293
Library CH
(Link to library)
Clone ID CHS293
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16477-1
Original site URL
Representative seq. ID CHS293P
(Link to Original site)
Representative DNA sequence
>CHS293 (CHS293Q) /CSM/CH/CHS2-D/CHS293Q.Seq.d/
ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT
TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG
GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA
GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG
ACCTTGATGATATAGATATAGAAGAAGATXXXXXXXXXXCTCAAGGAATACTTTAGTCCA
AATCAATCAGAGAGAGGTTTTTCATTGGCTTTGGAACATGGCATTGGTGGTGCACGTCTT
TCTCACAATCATCGTAAACAATATAACTATGTATATCAATCACTCTCCTTGTGGCAACAT
ATTCTTCATGATATGTTTAAACTTTGGTACTTTGCAGAAATTGATCTTTTATGCGGACAC
AGATATCAATTATCAAACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAACGTT
GGTAAAATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTGGGTT
GGTTCTTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCATCGAT
AAATACACTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAACCATTGAATATATTCCA
AAGATCACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACAAACT
TTAACCAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGCCGAT
AACTTTTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAATGGTCT
GCTCAAATCGCAAAGAAACCTTATTATCCAATATTTTATTATCAGGTTTTAGG
sequence update 2002.10.25
Translated Amino Acid sequence
KIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSGHSSEHTKNELKVASKTSKKR
RDQSEEMSKQNKLTKVLDNDLDDIDIEED---

---LKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWY
FAEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDH
NVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFF
KHAFDGSGADNFFDAGSCIDGRLTSAWQWSAQIAKKPYYPIFYYQVL


Translated Amino Acid sequence (All Frames)
Frame A:
ikl*iiyktfkqivqp*y*vy*lt**yl*q*ligyiiyflgillnipkts*rwrpklqkk
eeinlkkcqnkin*qkfwittlmi*i*kk---

---LKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWY
FAEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDH
NVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFF
KHAFDGSGADNFFDAGSCIDGRLTSAWQWSAQIAKKPYYPIFYYQVL

Frame B:
*ncelytklsnr*fspnirfid*pnntcsnn*lgi*fifwaff*tyqkrvkggvqnfkkk
krsi*rnvktk*inksfg*rp**yryrrr---

---srntlvqinqrevfhwlwnmalvvhvfltiivnnitmyinhspcgniffmiclnfgt
lqklifyadtdinyqtlvkv*ivfnnvqtlvklcivfyvklkkklvmiglvlplfiwvii
tfqtlwfssintlksles*vqsf*plnifqrspiqi*lltsktplvvhkl*pkssfvisl
ntlsmvvvpitfsmlalvlmvd*lllgngllksqrnliiqyfiirf*

Frame C:
KIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSGHSSEHTKNELKVASKTSKKR
RDQSEEMSKQNKLTKVLDNDLDDIDIEED---

---qgil*sksirerffigfgtwhwwctsfsqss*ti*lcisitllvatyss*yv*tlvl
crn*sfmrtqisiikhwsrsksystmskrw*nya*ystsnskksw**lgwffrysfg*s*
rsklfgfhr*ihsnl*npksnrfnh*iyskdhrskfsclhqkhlwwstnfnqnhpl*fl*
trfrw*wcr*lfrcwlly*w*infclamvcsnrketllsnillsgfr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS293 (CHS293Q) /CSM/CH/CHS2-D/CHS293Q.Seq.d/ 1735 0.0
VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/ 1289 0.0
VHI553 (VHI553Q) /CSM/VH/VHI5-C/VHI553Q.Seq.d/ 1289 0.0
VHD241 (VHD241Q) /CSM/VH/VHD2-B/VHD241Q.Seq.d/ 1289 0.0
VHA539 (VHA539Q) /CSM/VH/VHA5-B/VHA539Q.Seq.d/ 1289 0.0
CHR668 (CHR668Q) /CSM/CH/CHR6-C/CHR668Q.Seq.d/ 1289 0.0
CHR513 (CHR513Q) /CSM/CH/CHR5-A/CHR513Q.Seq.d/ 1289 0.0
CHQ507 (CHQ507Q) /CSM/CH/CHQ5-A/CHQ507Q.Seq.d/ 1289 0.0
CHM612 (CHM612Q) /CSM/CH/CHM6-A/CHM612Q.Seq.d/ 1289 0.0
CHL782 (CHL782Q) /CSM/CH/CHL7-D/CHL782Q.Seq.d/ 1289 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC134426|AC134426.20 Mus musculus chromosome 1, clone RP24-342A12, complete sequence. 50 0.086 1
AC021798|AC021798.5 Homo sapiens clone RP11-25K3, WORKING DRAFT SEQUENCE, 17 unordered pieces. 48 0.34 1
AC099065|AC099065.2 Homo sapiens chromosome 1 clone RP11-105I12, complete sequence. 48 0.34 1
AC096542|AC096542.2 Homo sapiens chromosome 1 clone RP11-332L18, complete sequence. 48 0.34 1
AQ973805|AQ973805.1 RPCI-23-313N9.TJ RPCI-23 Mus musculus genomic clone RPCI-23-313N9, genomic survey sequence. 46 1.3 1
CR382125|CR382125.1 Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis. 46 1.3 1
BB177270|BB177270.1 Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230066A19, 3' end partial sequence. 34 1.4 2
AC165969|AC165969.5 Mus musculus BAC clone RP23-141K11 from chromosome 6, complete sequence. 34 2.0 4
AF129005|AF129005.1 Mus musculus VNO olfactory cluster. 34 2.1 4
CX300821|CX300821.1 C08002F02SK PhyRootSw1 Citrus sinensis cDNA clone C08002F02, mRNA sequence. 40 2.3 2
dna update 2005.11.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR382131_1131(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 262 1e-68
CR940353_528(CR940353|pid:none) Theileria annulata strain Ankara... 254 4e-66
CP001142_478(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 242 1e-62
AL844507_193(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 234 4e-60
AM910996_269(AM910996|pid:none) Plasmodium knowlesi strain H chr... 234 4e-60
CP000081_414(CP000081|pid:none) Leishmania major chromosome 35, ... 219 8e-56
AM502253_428(AM502253|pid:none) Leishmania infantum chromosome 35. 218 2e-55
CR380956_239(CR380956|pid:none) Candida glabrata strain CBS138 c... 217 4e-55
AM494971_416(AM494971|pid:none) Leishmania braziliensis chromoso... 217 5e-55
CR382125_995(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 216 9e-55
protein update 2008.11.10
PSORT

psg: 0.73 gvh: 0.50 alm: 0.11 top: 0.60 tms: 0.07 mit: 0.23 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CHS293 is nuc

5' end seq. ID CHS293F
5' end seq.
>CHS293F.Seq
ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT
TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG
GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA
GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG
ACCTTGATGATATAGATATAGAAGAAGATNNNNNNNNNN
Length of 5' end seq. 279
3' end seq. ID CHS293Z
3' end seq.
>CHS293Z.Seq
NNNNNNNNNNCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGC
TTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTA
TGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTA
CTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGG
TCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCA
AACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCA
TAACGTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAG
TCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTA
CATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTT
TAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGA
TGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTATTATCC
AATATTTTATTATCAGGTTTTAGG
Length of 3' end seq. 684
Connected seq. ID CHS293P
Connected seq.
>CHS293P.Seq
ATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAGGTT
TATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTTCTG
GGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAAAAA
GAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATAACG
ACCTTGATGATATAGATATAGAAGAAGAT----------CTCAAGGAATACTTTAGTCCA
AATCAATCAGAGAGAGGTTTTTCATTGGCTTTGGAACATGGCATTGGTGGTGCACGTCTT
TCTCACAATCATCGTAAACAATATAACTATGTATATCAATCACTCTCCTTGTGGCAACAT
ATTCTTCATGATATGTTTAAACTTTGGTACTTTGCAGAAATTGATCTTTTATGCGGACAC
AGATATCAATTATCAAACACTGGTCAAGGTCTAAATCGTATTCAACAATGTCCAAACGTT
GGTAAAATTATGCATAGTATTCTACGTCAAACTCAAAAAAAAGTTGGTGATGATTGGGTT
GGTTCTTCCGTTATTCATTTGGGTGATCATAACGTTCCAAACTCTTTGGTTTTCATCGAT
AAATACACTCAAATCTCTAGAATCCTAAGTCCAATCGTTTTAACCATTGAATATATTCCA
AAGATCACCGATCCAAATTTAGTTGCTTACATCAAAAACACCTTTGGTGGTCCACAAACT
TTAACCAAAATCATCCTTTGTGATTTCTTTAAACACGCTTTCGATGGTAGTGGTGCCGAT
AACTTTTTCGATGCTGGCTCTTGTATTGATGGTAGATTAACTTCTGCTTGGCAATGGTCT
GCTCAAATCGCAAAGAAACCTTATTATCCAATATTTTATTATCAGGTTTTAGG
Length of connected seq. 943
Full length Seq ID -
Full length Seq. -
Length of full length seq. -