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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS291
Library CH
(Link to library)
Clone ID CHS291
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15617-1
Original site URL
Representative seq. ID CHS291P
(Link to Original site)
Representative DNA sequence 
>CHS291 (CHS291Q) /CSM/CH/CHS2-D/CHS291Q.Seq.d/
AAAAAATAAAAAAAATAAAAAAAAATAAAAAAAAAATAAAAAACTAATAATTAAAAAAAT
TAAATATTGTAGTAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAATAATAACATGAGTAACT
CAAATAATAATAGCTCAAGNGGTAATCATAATAGTNCAACAATAAATAACCCTAAAGTTA
ATGTATATAGCAATATACCAAATTCAACAACATACACATATGGCAGCGGAGGAGGNGGAA
CACTAAGTGGAAATAATACTAATAATANCAACNCCAACAATAACAATAATAATAATAATA
ATAGTAGGGGANATAATAAAANCCAXXXXXXXXXXCTGGTAGAATCACTNTTCCATTAGG
TTTTGATGGTGATGNTAAAGNTTTAATTAAACGATNNTTAANTGCTGATAGAACTCGTAG
ATTGGGTGCTTTAAAGGATGGTGCATTAGATGTCAAAAATCATAGATGGTTTTCTGATAT
TAATTGGGAAAGATTATATCAGAGAAGAGATAATGGACCATTCATTCCAAAGATTCAACA
TCNAGGTGATTCTTCAANCTTTGAAATGTATGATGAAGAAGAAATGGTTGAAGAGCCTCC
ATCTTCANATTATGNTGATCCATANGCACATCTTTTCAAGGATTTTTAAAAAATAAAAGA
TAATAACAAATANNACAAATTATAATAATTAANAATAATAATAATAAAAGTGTCAATTAA
NAATAACAANAATAATAATAATAATAATAATAATAATAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
kikkikknkkkikn**lkklnivvkk*ink*ink*ink*ink*ink*ink*INNNNMSNS
NNNSSXGNHNSXTINNPKVNVYSNIPNSTTYTYGSGGGGTLSGNNTNNXNXNNNNNNNNN
SRGXNKX---

---GRITXPLGFDGDXKXLIKRXLXADRTRRLGALKDGALDVKNHRWFSDINWERLYQRR
DNGPFIPKIQHXGDSSXFEMYDEEEMVEEPPSSXYXDPXAHLFKDF*kikdnnkxxkl**
lxiiiikvsixnnxnnnnnnnnnn
Translated Amino Acid sequence (All Frames) 
Frame A:
kk*kk*kkikkk*ktnn*kn*il**knk*ink*ink*ink*ink*ink*ink*iiit*vt
qiiiaqxviiivqq*itlklmyiaiyqiqqhthmaaeexeh*veiiliixtptitiiiii
ivgxiikx---

---lveslfh*vlmvmxkx*lndx*xlielvdwvl*rmvh*mskiidgfliligkdyire
eimdhsfqrfnixvilqxlkcmmkkkwlkslhlximxihxhifsrifkk*kiitnxtnyn
n*x****kcqlxitxiiiiiiiiii

Frame B:
knkknkkk*kknkkliikkikycskkink*ink*ink*ink*ink*ink*ink***he*l
k***lkx*s**xnnk*p*s*ci*qytkfnnihiwqrrrxntkwk*y**xqxqq*q*****
**gx**xp---

---w*nhxsirf*w*x*xfn*txxxc**ns*igcfkgwcircqks*mvf*y*lgkiisek
r*wtihskdstsr*ffxl*nv**rrng*rasifxlx*sixtsfqgflknkr**qixqiii
ixnnnnksvn*x*qx**********

Frame C:
kikkikknkkkikn**lkklnivvkk*ink*ink*ink*ink*ink*ink*INNNNMSNS
NNNSSXGNHNSXTINNPKVNVYSNIPNSTTYTYGSGGGGTLSGNNTNNXNXNNNNNNNNN
SRGXNKX---

---GRITXPLGFDGDXKXLIKRXLXADRTRRLGALKDGALDVKNHRWFSDINWERLYQRR
DNGPFIPKIQHXGDSSXFEMYDEEEMVEEPPSSXYXDPXAHLFKDF*kikdnnkxxkl**
lxiiiikvsixnnxnnnnnnnnnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS291 (CHS291Q) /CSM/CH/CHS2-D/CHS291Q.Seq.d/                        549   e-155
CHP121 (CHP121Q) /CSM/CH/CHP1-A/CHP121Q.Seq.d/                        533   e-150
CHL103 (CHL103Q) /CSM/CH/CHL1-A/CHL103Q.Seq.d/                        533   e-150
CHI186 (CHI186Q) /CSM/CH/CHI1-D/CHI186Q.Seq.d/                        533   e-150
AHM265 (AHM265Q) /CSM/AH/AHM2-C/AHM265Q.Seq.d/                        533   e-150
SFH701 (SFH701Q) /CSM/SF/SFH7-A/SFH701Q.Seq.d/                        527   e-149
AFI637 (AFI637Q) /CSM/AF/AFI6-B/AFI637Q.Seq.d/                        527   e-149
CHH347 (CHH347Q) /CSM/CH/CHH3-B/CHH347Q.Seq.d/                        517   e-146
CHM664 (CHM664Q) /CSM/CH/CHM6-C/CHM664Q.Seq.d/                        509   e-143
CHJ469 (CHJ469Q) /CSM/CH/CHJ4-C/CHJ469Q.Seq.d/                        496   e-139
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M38703|M38703.1 Dictyostelium discoideum protein kinase (Dd GPK2) gene, exons 1 and 2.   389   0.0    3
BM889422|BM889422.1 kb10d06.y1 Brugia malayi 2D L3 irradiated pAMP1 v1 Brugia malayi cDNA 5' similar to contains element MER28 repetitive element ;, mRNA sequence.    48   0.29   1
BM889175|BM889175.1 kb06f12.y1 Brugia malayi 2D L3 irradiated pAMP1 v1 Brugia malayi cDNA 5' similar to contains element MER28 repetitive element ;, mRNA sequence.    48   0.29   1
CO017578|CO017578.1 EST787960 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBV35 3' end, mRNA sequence.    40   2.7    2
CF818303|CF818303.1 EST695685 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBB387 3' end, mRNA sequence.    40   2.9    2
CO018200|CO018200.1 EST788582 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBZ07 3' end, mRNA sequence.    40   3.1    2
CF813152|CF813152.1 EST690534 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBA862 3' end, mRNA sequence.    40   3.1    2
CF815825|CF815825.1 EST693207 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBAO67 3' end, mRNA sequence.    40   3.2    2
CO017765|CO017765.1 EST788147 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBW46 3' end, mRNA sequence.    40   3.3    2
CO015839|CO015839.1 EST786221 Coccidioides posadasii saprobic phase cDNA library, greater than 4kb Coccidioides posadasii cDNA clone CIBBK82 3' end, mRNA sequence.    40   3.4    2
dna update 2005.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

JQ1150(JQ1150)protein kinase (EC 2.7.1.37) cAMP-dependent, catal...   144   3e-33
(P34099) RecName: Full=cAMP-dependent protein kinase catalytic s...   144   3e-33
A84453_1(A84453|pid:none) Sequence 68 from Patent WO9845704.  &A...    80   8e-14
(P51817) RecName: Full=Serine/threonine-protein kinase PRKX;    ...    80   8e-14
M12303_1(M12303|pid:none) Mouse cAMP-dependent protein kinase ca...    80   8e-14
AF238980_1(AF238980|pid:none) Ovis aries sperm cAMP-dependent pr...    78   3e-13
(P27791) RecName: Full=cAMP-dependent protein kinase catalytic s...    78   3e-13
AK292284_1(AK292284|pid:none) Homo sapiens cDNA FLJ77368 complet...    78   3e-13
S00086(S00086) protein kinase (EC 2.7.1.37), cAMP-dependent, typ...    78   3e-13
BX322647_6(BX322647|pid:none) Zebrafish DNA sequence from clone ...    78   3e-13
protein update 2009. 4.13
PSORT 

 psg: 0.68  gvh: 0.26  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.13
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 12.0 %: cytoskeletal

>> prediction for CHS291 is nuc
5' end seq. ID CHS291F
5' end seq. 
>CHS291F.Seq
AAAAAATAAAAAAAATAAAAAAAAATAAAAAAAAAATAAAAAACTAATAATTAAAAAAAT
TAAATATTGTAGTAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAATAATAACATGAGTAACT
CAAATAATAATAGCTCAAGNGGTAATCATAATAGTNCAACAATAAATAACCCTAAAGTTA
ATGTATATAGCAATATACCAAATTCAACAACATACACATATGGCAGCGGAGGAGGNGGAA
CACTAAGTGGAAATAATACTAATAATANCAACNCCAACAATAACAATAATAATAATAATA
ATAGTAGGGGANATAATAAAANCCANNNNNNNNNN
Length of 5' end seq. 395
3' end seq. ID CHS291Z
3' end seq. 
>CHS291Z.Seq
NNNNNNNNNNCTGGTAGAATCACTNTTCCATTAGGTTTTGATGGTGATGNTAAAGNTTTA
ATTAAACGATNNTTAANTGCTGATAGAACTCGTAGATTGGGTGCTTTAAAGGATGGTGCA
TTAGATGTCAAAAATCATAGATGGTTTTCTGATATTAATTGGGAAAGATTATATCAGAGA
AGAGATAATGGACCATTCATTCCAAAGATTCAACATCNAGGTGATTCTTCAANCTTTGAA
ATGTATGATGAAGAAGAAATGGTTGAAGAGCCTCCATCTTCANATTATGNTGATCCATAN
GCACATCTTTTCAAGGATTTTTAAAAAATAAAAGATAATAACAAATANNACAAATTATAA
TAATTAANAATAATAATAATAAAAGTGTCAATTAANAATAACAANAATAATAATAATAAT
AATAATAATAATAATAA
Length of 3' end seq. 437
Connected seq. ID CHS291P
Connected seq. 
>CHS291P.Seq
AAAAAATAAAAAAAATAAAAAAAAATAAAAAAAAAATAAAAAACTAATAATTAAAAAAAT
TAAATATTGTAGTAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAATAATAACATGAGTAACT
CAAATAATAATAGCTCAAGNGGTAATCATAATAGTNCAACAATAAATAACCCTAAAGTTA
ATGTATATAGCAATATACCAAATTCAACAACATACACATATGGCAGCGGAGGAGGNGGAA
CACTAAGTGGAAATAATACTAATAATANCAACNCCAACAATAACAATAATAATAATAATA
ATAGTAGGGGANATAATAAAANCCA----------CTGGTAGAATCACTNTTCCATTAGG
TTTTGATGGTGATGNTAAAGNTTTAATTAAACGATNNTTAANTGCTGATAGAACTCGTAG
ATTGGGTGCTTTAAAGGATGGTGCATTAGATGTCAAAAATCATAGATGGTTTTCTGATAT
TAATTGGGAAAGATTATATCAGAGAAGAGATAATGGACCATTCATTCCAAAGATTCAACA
TCNAGGTGATTCTTCAANCTTTGAAATGTATGATGAAGAAGAAATGGTTGAAGAGCCTCC
ATCTTCANATTATGNTGATCCATANGCACATCTTTTCAAGGATTTTTAAAAAATAAAAGA
TAATAACAAATANNACAAATTATAATAATTAANAATAATAATAATAAAAGTGTCAATTAA
NAATAACAANAATAATAATAATAATAATAATAATAATAATAA
Length of connected seq. 812
Full length Seq ID -
Full length Seq. -
Length of full length seq. -