CHS289
Library CH
(Link to library)
Clone ID CHS289
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16324-1
Original site URL
Representative seq. ID CHS289P
(Link to Original site)
Representative DNA sequence
>CHS289 (CHS289Q) /CSM/CH/CHS2-D/CHS289Q.Seq.d/
TGGCCTACTGGAAATCTAACAATTCAAATAGTTAATCAAATAGTAACATTACATATAAAA
TTAAATACTATTACAATTATACAATAATTTTTATAAAAAAAAATAATAATAATAATAATA
ATAATAAAAAATAAAGTTAATTGATAAATATATTTAAATAAATAAAAAAAAAAXXXXXXX
XXXAAATCTAACAATTCAAATAGTTAATCAAATAGTAACATTACATATAAAATTAAATAC
TATTACAATTATACAATAATTTTTATAAAAAAAAATAATAATAATAATAATAATAATAAA
AAATAAAGTTATNATAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
gllei*qfk*lik**hyi*n*illqlynnfykkk********kiklidkyi*INKKK---

---NLTIQIVNQIVTLHIKLNTITIIQ*fl*kkiiiiiiiiknkvxin


Translated Amino Acid sequence (All Frames)
Frame A:
wptgnltiqivnqivtlhiklntitiiq*fl*kkiiiiiiiiknkvn**iylnk*kk---

---ksnnsns*snsnitykikyyynytiifikknnnnnnnnkk*syxk

Frame B:
gllei*qfk*lik**hyi*n*illqlynnfykkk********kiklidkyi*INKKK---

---NLTIQIVNQIVTLHIKLNTITIIQ*fl*kkiiiiiiiiknkvxin

Frame C:
aywksnnsns*snsnitykikyyynytiifikknnnnnnnnkk*s*linifk*ikkk---

---i*qfk*lik**hyi*n*illqlynnfykkk********kiklx*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS289 (CHS289Q) /CSM/CH/CHS2-D/CHS289Q.Seq.d/ 163 2e-39
SFK780 (SFK780Q) /CSM/SF/SFK7-D/SFK780Q.Seq.d/ 141 7e-33
AFM468 (AFM468Q) /CSM/AF/AFM4-C/AFM468Q.Seq.d/ 141 7e-33
CHN407 (CHN407Q) /CSM/CH/CHN4-A/CHN407Q.Seq.d/ 131 7e-30
SLF850 (SLF850Q) /CSM/SL/SLF8-C/SLF850Q.Seq.d/ 105 4e-22
SLF886 (SLF886Q) /CSM/SL/SLF8-D/SLF886Q.Seq.d/ 92 6e-18
SLB576 (SLB576Q) /CSM/SL/SLB5-D/SLB576Q.Seq.d/ 84 1e-15
AFL409 (AFL409Q) /CSM/AF/AFL4-A/AFL409Q.Seq.d/ 58 8e-08
VSF631 (VSF631Q) /CSM/VS/VSF6-B/VSF631Q.Seq.d/ 38 0.077
VFH449 (VFH449Q) /CSM/VF/VFH4-C/VFH449Q.Seq.d/ 38 0.077

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

S72639|S72639.1 PspB=prespore-specific gene {5' region} [Dictyostelium discoideum, Genomic, 1918 nt]. 141 6e-30 2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 141 1e-29 1
CR382327|CR382327.27 Zebrafish DNA sequence from clone CH211-235M3 in linkage group 15. 38 0.28 2
CT010433|CT010433.6 Mouse DNA sequence from clone RP23-239M23 on chromosome 17. 38 0.29 2
AY510701|AY510701.1 Mus musculus chromosome 17 clone RP22-25j20 strain 129S6/SvEvTac, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces. 38 0.30 2
BH766986|BH766986.1 BMBAC345H05T7_PSU Brugia malayi Genomic Bac Library 3 Brugia malayi genomic, DNA sequence. 34 0.32 2
BX088697|BX088697.9 Zebrafish DNA sequence from clone CH211-224C7 in linkage group 14. 40 1.3 2
AW335511|AW335511.1 S48B2 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence. 44 1.7 1
AL161667|AL161667.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1I16. 38 2.7 2
BX005069|BX005069.9 Zebrafish DNA sequence from clone CH211-132P1 in linkage group 14. 40 5.2 3
dna update 2005.11.28
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 110,741,696
protein update 2009. 4.13
PSORT

psg: 0.82 gvh: 0.29 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
24.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for CHS289 is nuc

5' end seq. ID CHS289F
5' end seq.
>CHS289F.Seq
TGGCCTACTGGAAATCTAACAATTCAAATAGTTAATCAAATAGTAACATTACATATAAAA
TTAAATACTATTACAATTATACAATAATTTTTATAAAAAAAAATAATAATAATAATAATA
ATAATAAAAAATAAAGTTAATTGATAAATATATTTAAATAAATAAAAAAAAAANNNNNNN
NNN
Length of 5' end seq. 183
3' end seq. ID CHS289Z
3' end seq.
>CHS289Z.Seq
NNNNNNNNNNAAATCTAACAATTCAAATAGTTAATCAAATAGTAACATTACATATAAAAT
TAAATACTATTACAATTATACAATAATTTTTATAAAAAAAAATAATAATAATAATAATAA
TAATAAAAAATAAAGTTATNATAAAT
Length of 3' end seq. 146
Connected seq. ID CHS289P
Connected seq.
>CHS289P.Seq
TGGCCTACTGGAAATCTAACAATTCAAATAGTTAATCAAATAGTAACATTACATATAAAA
TTAAATACTATTACAATTATACAATAATTTTTATAAAAAAAAATAATAATAATAATAATA
ATAATAAAAAATAAAGTTAATTGATAAATATATTTAAATAAATAAAAAAAAAA-------
---AAATCTAACAATTCAAATAGTTAATCAAATAGTAACATTACATATAAAATTAAATAC
TATTACAATTATACAATAATTTTTATAAAAAAAAATAATAATAATAATAATAATAATAAA
AAATAAAGTTATNATAAAT
Length of connected seq. 309
Full length Seq ID -
Full length Seq. -
Length of full length seq. -