CHS286
Library CH
(Link to library)
Clone ID CHS286
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11893-1
Original site URL
Representative seq. ID CHS286P
(Link to Original site)
Representative DNA sequence
>CHS286 (CHS286Q) /CSM/CH/CHS2-D/CHS286Q.Seq.d/
ATTCACTAAAACAAATTTAATTAAACTCAATTTTTAAAAAAGATGCCACCAAAGAAAAGA
CAATTATCACAAAGTGATGAAGATGTAAAAACCACTACAACCACTACTACTTCAACATCA
ACAAAACCACTCACTGAAATTTTCGATGGAATTGTATTTTGTTTTTCAGGTACATTTTCA
GTAACACAAACTGAATTAACAAAAAAAGTTGAAGGTTGTGGCGCATCAACCTCAAAAACA
TGCACTGCTAAAGTTACACATTTAGTATCAACTGTAGATGATTTTAAAAAGAATGGTACA
GCAGTTTCAAAAGCTCTCAAATCTGGTATTCCAATTGTAACCGAAGGTTTCATTACTAAA
TCAATTGAAGCATCAAAGAAATTGGAAGAAAAAGATTATTCACTTTCATCTTCAAACGAT
GACGAAGAGGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGTT
GCCAAACCAACTAGAAGATCATCAAAGAAAGCACCAGCTAAATCTGAAGAAAAAGGAGAA
GATAAAAATAAACTTACAACTCGTCCAACTAAAAAAACTAAAACCAATACAAGTGAAGCT
GAAACCAAAACAGCTGCATCAGATCTTGATGATAGCAGTAGTGAATCTGAAGATGAAAAA
AATCXXXXXXXXXXCCACTCGATGAAAACTNTTGTGAATATAAAAATATTTTATTATATG
TTAAAAACACTTATCAAGGTGGAAAGAAACCAACCATTGTAAACATTTTCAAGATTGATC
GTGATGGTGAAGCAGATCGTTATAAAACTAAAAAACATCTTGGTAATANAAAACTNTTAT
GGCATGGTTNTNGTTTAACAAATTATGCTTCCATCATTTCACAAGGTTTAANAATTGCTC
CACCTGAAGCTCCAGTTTNTGGTTATANATTTGGAAAAGGTGTTTATTTTGCTGATTGTA
TGTCACTTTNTGCAAATTATTGTAGAACAGTTGGATNTAATGATTTTTGTATGTTATTAG
GTGATGTTGCATTGGGTAAAACTGCAGATTTGGCTANAGATACTTATATGGAGAAACCNC
AACCAAATTTTCATTCAACTTGGGCTTTAGGTACTGTTGAACCAGATCCAAAAGTATTTT
TCCAAGATACTGAAGGTTGTATCACTCCATACGGCCAAATGATTCCATNTCAACATAAAG
GTGTTTCTTGTTATGAACATCAATATGTCGTTTATGATGTTGCTCAAGTTCATTTGAAAT
ATCTTTTGCAATTAAGAAATTAATAAACTATATTTAATTGTATAATAATAATAATAATAA
TAAAATAAAAAAAATAAAAAAATAAAATAAAAAAAATAATAAAAAAAATAATAAAAAAAT
AATAGAAAAAAAAAATTAAATAATTATTATTTATTTAAA
sequence update 2002.10.25
Translated Amino Acid sequence
ih*nkfn*TQFLKKMPPKKRQLSQSDEDVKTTTTTTTSTSTKPLTEIFDGIVFCFSGTFS
VTQTELTKKVEGCGASTSKTCTAKVTHLVSTVDDFKKNGTAVSKALKSGIPIVTEGFITK
SIEASKKLEEKDYSLSSSNDDEEEEEEEEEEEEEEEEEEVAKPTRRSSKKAPAKSEEKGE
DKNKLTTRPTKKTKTNTSEAETKTAASDLDDSSSESEDEKN---

---PLDENXCEYKNILLYVKNTYQGGKKPTIVNIFKIDRDGEADRYKTKKHLGNXKLLWH
GXXLTNYASIISQGLXIAPPEAPVXGYXFGKGVYFADCMSLXANYCRTVGXNDFCMLLGD
VALGKTADLAXDTYMEKPQPNFHSTWALGTVEPDPKVFFQDTEGCITPYGQMIPXQHKGV
SCYEHQYVVYDVAQVHLKYLLQLRN**tifnciiiiiiik*kk*knkikkiikkiikk**
kkkik*llfi*


Translated Amino Acid sequence (All Frames)
Frame A:
ih*nkfn*TQFLKKMPPKKRQLSQSDEDVKTTTTTTTSTSTKPLTEIFDGIVFCFSGTFS
VTQTELTKKVEGCGASTSKTCTAKVTHLVSTVDDFKKNGTAVSKALKSGIPIVTEGFITK
SIEASKKLEEKDYSLSSSNDDEEEEEEEEEEEEEEEEEEVAKPTRRSSKKAPAKSEEKGE
DKNKLTTRPTKKTKTNTSEAETKTAASDLDDSSSESEDEKN---

---PLDENXCEYKNILLYVKNTYQGGKKPTIVNIFKIDRDGEADRYKTKKHLGNXKLLWH
GXXLTNYASIISQGLXIAPPEAPVXGYXFGKGVYFADCMSLXANYCRTVGXNDFCMLLGD
VALGKTADLAXDTYMEKPQPNFHSTWALGTVEPDPKVFFQDTEGCITPYGQMIPXQHKGV
SCYEHQYVVYDVAQVHLKYLLQLRN**tifnciiiiiiik*kk*knkikkiikkiikk**
kkkik*llfi*

Frame B:
ftktnliklnf*krchqrkdnyhkvmkm*kplqplllqhqqnhslkfsmelyfvfqvhfq
*hkln*qkklkvvahqpqkhallklhi*yql*milkrmvqqfqklsnlvfql*pkvslln
qlkhqrnwkkkiihfhlqtmtkrkkkkrkkkrkrkkkkklpnqledhqrkhqlnlkkkek
ikinlqlvqlkklkpiqvklkpkqlhqilmiavvnlkmkki---

---hsmktxvnikifyymlktlikvernqpl*tfsrlivmvkqiviklknilvixnxygm
vxv*qimlpsfhkv*xllhlklqfxvixlekvfillivchfxqiiveqldxmifvcy*vm
lhwvklqiwlxiliwrnxnqifiqlgl*vllnqiqkyfskilkvvslhtak*fhxnikvf
lvmninmsfmmllkfi*nifcn*einklyliv*******nkknkkik*kk**kk**knnr
kkklnnyylfk

Frame C:
slkqi*lnsifkkdatkektiitk**rcknhynhyyfninktth*nfrwncilffryifs
ntn*inkks*rlwrinlknmhc*sytfsincr*f*kewyssfkssqiwysncnrrfhy*i
n*sikeigrkrlftfifkr*rrgrrrrgrrrgrgrrrrscqtn*kiikests*i*rkrrr
*k*tynssn*kn*nqyk*s*nqnscirs***q**i*r*kk---

---tr*kll*i*kyfiic*khlsrwketnhckhfqd*s*w*srsl*n*ktsw*xktxmaw
xxfnklcfhhftrfxncst*sssxwlxiwkrclfc*lyvtxckll*nswx**flyvir*c
cig*ncrfgxrylygetxtkfsfnlgfryc*trsksifpry*rlyhsirpndsxst*rcf
ll*tsicrl*ccsssfeisfaikklinyi*lynnnnnnkikkikk*nkknnkknnkkiie
kkn*iiiiyl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS286 (CHS286Q) /CSM/CH/CHS2-D/CHS286Q.Seq.d/ 1102 0.0
VHH451 (VHH451Q) /CSM/VH/VHH4-C/VHH451Q.Seq.d/ 1072 0.0
CHO733 (CHO733Q) /CSM/CH/CHO7-B/CHO733Q.Seq.d/ 1072 0.0
VHB207 (VHB207Q) /CSM/VH/VHB2-A/VHB207Q.Seq.d/ 1066 0.0
VHG617 (VHG617Q) /CSM/VH/VHG6-A/VHG617Q.Seq.d/ 989 0.0
SFI255 (SFI255Q) /CSM/SF/SFI2-C/SFI255Q.Seq.d/ 950 0.0
CHO833 (CHO833Q) /CSM/CH/CHO8-B/CHO833Q.Seq.d/ 852 0.0
SLD235 (SLD235Q) /CSM/SL/SLD2-B/SLD235Q.Seq.d/ 527 e-148
VHM584 (VHM584Q) /CSM/VH/VHM5-D/VHM584Q.Seq.d/ 54 6e-06
VHL657 (VHL657Q) /CSM/VH/VHL6-C/VHL657Q.Seq.d/ 54 6e-06

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ520099|AJ520099.1 Dictyostelium discoideum mRNA for (ADP-ribosyl)transferase (adprt2 gene). 1094 0.0 1
CD169680|CD169680.1 MM1-0024T-M080-G03-U.G MM1-0024 Schistosoma mansoni cDNA clone MM1-0024T-M080-G03.G, mRNA sequence. 78 6e-10 1
CD169660|CD169660.1 MM1-0024T-M080-E06-U.G MM1-0024 Schistosoma mansoni cDNA clone MM1-0024T-M080-E06.G, mRNA sequence. 78 6e-10 1
CD068585|CD068585.1 MA2-0002P-V059-B02-U.B MA2-0002 Schistosoma mansoni cDNA clone MA2-0002P-V059-B02.B, mRNA sequence. 78 6e-10 1
AJ534948|AJ534948.1 Dictyostelium discoideum mRNA for NAD(+) ADP-ribosyltransferase-1A (adprt-1A gene). 54 8e-07 5
CV672576|CV672576.1 RET7SJ_03F05.T7 Schistosoma japonicum reverse cDNA Schistosoma japonicum cDNA, mRNA sequence. 50 7e-05 3
CV672842|CV672842.1 RET7SJ_07H04.T7 Schistosoma japonicum reverse cDNA Schistosoma japonicum cDNA, mRNA sequence. 50 7e-05 3
CF445056|CF445056.1 EST681401 normalized cDNA library of onion Allium cepa cDNA clone ACAIF62, mRNA sequence. 46 5e-04 2
CF439652|CF439652.1 EST675997 normalized cDNA library of onion Allium cepa cDNA clone ACAAS01, mRNA sequence. 46 5e-04 2
CX590527|CX590527.1 TTE00031180 Amplicon Express - Conjugative Form Tetrahymena thermophila cDNA, mRNA sequence. 58 5e-04 1
dna update 2005.11.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ520099_1(AJ520099|pid:none) Dictyostelium discoideum mRNA for ... 402 e-110
(P35875) RecName: Full=Poly [ADP-ribose] polymerase; Sh... 173 1e-41
AY118947_1(AY118947|pid:none) Drosophila melanogaster LD31274 fu... 173 1e-41
(Q9R152) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 166 1e-39
AK159433_1(AK159433|pid:none) Mus musculus osteoclast-like cell ... 166 2e-39
(P11103) RecName: Full=Poly [ADP-ribose] polymerase 1; ... 166 2e-39
AK166104_1(AK166104|pid:none) Mus musculus lung RCB-0558 LLC cDN... 166 2e-39
AK169326_1(AK169326|pid:none) Mus musculus 17 days pregnant adul... 166 2e-39
AK167699_1(AK167699|pid:none) Mus musculus 14 days pregnant adul... 166 2e-39
AK030889_1(AK030889|pid:none) Mus musculus adult male thymus cDN... 166 2e-39
protein update 2009. 4.13
PSORT

psg: 0.40 gvh: 0.60 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.19 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for CHS286 is nuc

5' end seq. ID CHS286F
5' end seq.
>CHS286F.Seq
ATTCACTAAAACAAATTTAATTAAACTCAATTTTTAAAAAAGATGCCACCAAAGAAAAGA
CAATTATCACAAAGTGATGAAGATGTAAAAACCACTACAACCACTACTACTTCAACATCA
ACAAAACCACTCACTGAAATTTTCGATGGAATTGTATTTTGTTTTTCAGGTACATTTTCA
GTAACACAAACTGAATTAACAAAAAAAGTTGAAGGTTGTGGCGCATCAACCTCAAAAACA
TGCACTGCTAAAGTTACACATTTAGTATCAACTGTAGATGATTTTAAAAAGAATGGTACA
GCAGTTTCAAAAGCTCTCAAATCTGGTATTCCAATTGTAACCGAAGGTTTCATTACTAAA
TCAATTGAAGCATCAAAGAAATTGGAAGAAAAAGATTATTCACTTTCATCTTCAAACGAT
GACGAAGAGGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGTT
GCCAAACCAACTAGAAGATCATCAAAGAAAGCACCAGCTAAATCTGAAGAAAAAGGAGAA
GATAAAAATAAACTTACAACTCGTCCAACTAAAAAAACTAAAACCAATACAAGTGAAGCT
GAAACCAAAACAGCTGCATCAGATCTTGATGATAGCAGTAGTGAATCTGAAGATGAAAAA
AATCNNNNNNNNNN
Length of 5' end seq. 674
3' end seq. ID CHS286Z
3' end seq.
>CHS286Z.Seq
NNNNNNNNNNCCACTCGATGAAAACTNTTGTGAATATAAAAATATTTTATTATATGTTAA
AAACACTTATCAAGGTGGAAAGAAACCAACCATTGTAAACATTTTCAAGATTGATCGTGA
TGGTGAAGCAGATCGTTATAAAACTAAAAAACATCTTGGTAATANAAAACTNTTATGGCA
TGGTTNTNGTTTAACAAATTATGCTTCCATCATTTCACAAGGTTTAANAATTGCTCCACC
TGAAGCTCCAGTTTNTGGTTATANATTTGGAAAAGGTGTTTATTTTGCTGATTGTATGTC
ACTTTNTGCAAATTATTGTAGAACAGTTGGATNTAATGATTTTTGTATGTTATTAGGTGA
TGTTGCATTGGGTAAAACTGCAGATTTGGCTANAGATACTTATATGGAGAAACCNCAACC
AAATTTTCATTCAACTTGGGCTTTAGGTACTGTTGAACCAGATCCAAAAGTATTTTTCCA
AGATACTGAAGGTTGTATCACTCCATACGGCCAAATGATTCCATNTCAACATAAAGGTGT
TTCTTGTTATGAACATCAATATGTCGTTTATGATGTTGCTCAAGTTCATTTGAAATATCT
TTTGCAATTAAGAAATTAATAAACTATATTTAATTGTATAATAATAATAATAATAATAAA
ATAAAAAAAATAAAAAAATAAAATAAAAAAAATAATAAAAAAAATAATAAAAAAATAATA
GAAAAAAAAAATTAAATAATTATTATTTATTTAAA
Length of 3' end seq. 755
Connected seq. ID CHS286P
Connected seq.
>CHS286P.Seq
ATTCACTAAAACAAATTTAATTAAACTCAATTTTTAAAAAAGATGCCACCAAAGAAAAGA
CAATTATCACAAAGTGATGAAGATGTAAAAACCACTACAACCACTACTACTTCAACATCA
ACAAAACCACTCACTGAAATTTTCGATGGAATTGTATTTTGTTTTTCAGGTACATTTTCA
GTAACACAAACTGAATTAACAAAAAAAGTTGAAGGTTGTGGCGCATCAACCTCAAAAACA
TGCACTGCTAAAGTTACACATTTAGTATCAACTGTAGATGATTTTAAAAAGAATGGTACA
GCAGTTTCAAAAGCTCTCAAATCTGGTATTCCAATTGTAACCGAAGGTTTCATTACTAAA
TCAATTGAAGCATCAAAGAAATTGGAAGAAAAAGATTATTCACTTTCATCTTCAAACGAT
GACGAAGAGGAAGAAGAAGAAGAGGAAGAAGAAGAGGAAGAGGAAGAAGAAGAAGAAGTT
GCCAAACCAACTAGAAGATCATCAAAGAAAGCACCAGCTAAATCTGAAGAAAAAGGAGAA
GATAAAAATAAACTTACAACTCGTCCAACTAAAAAAACTAAAACCAATACAAGTGAAGCT
GAAACCAAAACAGCTGCATCAGATCTTGATGATAGCAGTAGTGAATCTGAAGATGAAAAA
AATC----------CCACTCGATGAAAACTNTTGTGAATATAAAAATATTTTATTATATG
TTAAAAACACTTATCAAGGTGGAAAGAAACCAACCATTGTAAACATTTTCAAGATTGATC
GTGATGGTGAAGCAGATCGTTATAAAACTAAAAAACATCTTGGTAATANAAAACTNTTAT
GGCATGGTTNTNGTTTAACAAATTATGCTTCCATCATTTCACAAGGTTTAANAATTGCTC
CACCTGAAGCTCCAGTTTNTGGTTATANATTTGGAAAAGGTGTTTATTTTGCTGATTGTA
TGTCACTTTNTGCAAATTATTGTAGAACAGTTGGATNTAATGATTTTTGTATGTTATTAG
GTGATGTTGCATTGGGTAAAACTGCAGATTTGGCTANAGATACTTATATGGAGAAACCNC
AACCAAATTTTCATTCAACTTGGGCTTTAGGTACTGTTGAACCAGATCCAAAAGTATTTT
TCCAAGATACTGAAGGTTGTATCACTCCATACGGCCAAATGATTCCATNTCAACATAAAG
GTGTTTCTTGTTATGAACATCAATATGTCGTTTATGATGTTGCTCAAGTTCATTTGAAAT
ATCTTTTGCAATTAAGAAATTAATAAACTATATTTAATTGTATAATAATAATAATAATAA
TAAAATAAAAAAAATAAAAAAATAAAATAAAAAAAATAATAAAAAAAATAATAAAAAAAT
AATAGAAAAAAAAAATTAAATAATTATTATTTATTTAAA
Length of connected seq. 1409
Full length Seq ID -
Full length Seq. -
Length of full length seq. -