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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS280
Library CH
(Link to library)
Clone ID CHS280
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11926-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS280 (CHS280Q) /CSM/CH/CHS2-D/CHS280Q.Seq.d/
XXXXXXXXXXGTTGCAANATTCNAATCAATGNNGATGANAANAANCCATGGTACCGNNGA
TGCNTGGTCCNAAATCAAACNGGTGTCATTCATACCCCCAGTAAATNTNGATGATAATAA
CGAATGTACNATTGATGCATGTACCAAANAAGGTGGTGTAACTCATACTCCAGTCAATGG
TGATGATAACAATGCCTGTACACTTGATTCCTGTTCACCATCAACTGGTGTTTCCCACAC
CCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGANTCATGTTCAAATTCAACCGG
TTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACTGTAGATGCTTGTAC
CAAATCAACAGGTGTCACNCATACCCCAGTAAATGTAGATGATAACAACAAATGTACAAT
TGATGCATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAACACTGATGATAACAA
TGCCTGTACAATTGATTCTTGTTCACCATCAACCGGTATTTCCCACACCCCAATCAATTG
TGATGATAAAAAGGCCTGTACAGTTGATTCATGTTCAAATTCAACTGGTTGTGTAAATAC
TCCAATTTCCTGTGACGATAATAATCCATGTACTGTTGATTCTTGCGATGACTTAACTGG
TTGTTGCAATACTCCAATCAATGTTGATGATAATAATCCATGTACCATCGATGCCTGTAC
TAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATAACAAATGTACAAT
TGATACATGTACCAAAGAT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---AXFXSMXMXXXHGTXDAWSXIKXVSFIPPVNXDDNNECTIDACTKXGGVTHTPVNGD
DNNACTLDSCSPSTGVSHTPINCDDSNPCTVXSCSNSTGCVNTPVNVDDNNPCTVDACTK
STGVTHTPVNVDDNNKCTIDACTKEGGVTHTPVNTDDNNACTIDSCSPSTGISHTPINCD
DKKACTVDSCSNSTGCVNTPISCDDNNPCTVDSCDDLTGCCNTPINVDDNNPCTIDACTK
STGVTHTPVNVDDNNKCTIDTCTKD
Translated Amino Acid sequence (All Frames) 
Frame A:
---lqxsnqxx*xxxmvpxmxgpksnxchsypq*xxmiitnvxlmhvpxkvv*lilqsmv
mitmpvhlipvhhqlvfptpqltvmivihvp*xhvqiqpvv*tlqsmlmiiihvl*mlvp
nqqvsxipq*m*mittnvqlmhvpkkvv*lilqstlmitmpvqlilvhhqpvfptpqsiv
mikrpvqlihvqiqlvv*ilqfpvtiiihvllilamt*lvvailqsmlmiiihvpsmpvl
nqqvllipqsm*miitnvqlihvpk


Frame B:
---cxixinxdxxxpwyrxcxvxnqtgvihtpskxx***rmyx*cmyqxrwcnsyssqw*
**qclyt*flftinwcfphpn*l****smyrrxmfkfnrlckhssqc****smycrclyq
inrchxypskcr**qqmyn*cmyqrrwcnsyssqh***qclyn*flftinryfphpnql*
**kglys*fmfkfnwlckysnfl*r**smyc*flr*lnwllqysnqc****smyhrcly*
inrcysypsqcr***qmyn*ymyqr


Frame C:
---AXFXSMXMXXXHGTXDAWSXIKXVSFIPPVNXDDNNECTIDACTKXGGVTHTPVNGD
DNNACTLDSCSPSTGVSHTPINCDDSNPCTVXSCSNSTGCVNTPVNVDDNNPCTVDACTK
STGVTHTPVNVDDNNKCTIDACTKEGGVTHTPVNTDDNNACTIDSCSPSTGISHTPINCD
DKKACTVDSCSNSTGCVNTPISCDDNNPCTVDSCDDLTGCCNTPINVDDNNPCTIDACTK
STGVTHTPVNVDDNNKCTIDTCTKD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS280 (CHS280Q) /CSM/CH/CHS2-D/CHS280Q.Seq.d/                       1457   0.0
SHE454 (SHE454Q) /CSM/SH/SHE4-C/SHE454Q.Seq.d/                       1207   0.0
SHJ336 (SHJ336Q) /CSM/SH/SHJ3-B/SHJ336Q.Seq.d/                       1156   0.0
SHG431 (SHG431Q) /CSM/SH/SHG4-B/SHG431Q.Seq.d/                       1118   0.0
SHG408 (SHG408Q) /CSM/SH/SHG4-A/SHG408Q.Seq.d/                       1007   0.0
SHK455 (SHK455Q) /CSM/SH/SHK4-C/SHK455Q.Seq.d/                       1005   0.0
SHA257 (SHA257Q) /CSM/SH/SHA2-C/SHA257Q.Seq.d/                        952   0.0
SHA221 (SHA221Q) /CSM/SH/SHA2-A/SHA221Q.Seq.d/                        801   0.0
SHD894 (SHD894Q) /CSM/SH/SHD8-D/SHD894Q.Seq.d/                        771   0.0
SHC394 (SHC394Q) /CSM/SH/SHC3-D/SHC394Q.Seq.d/                        757   0.0
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X78948|X78948.1 D.minutum ecmB gene.                               88   8e-28  5
AF134674|AF134674.1 Plasmodium falciparum strain MAI13 from Mali CG2 omega repeat (cg2) gene, partial cds.    28   0.10   4
AF134685|AF134685.1 Plasmodium falciparum strain UNK8 CG2 omega repeat (cg2) gene, partial cds.    28   0.11   4
AF134680|AF134680.1 Plasmodium falciparum strain SEN23 from Senegal CG2 omega repeat (cg2) gene, partial cds.    28   0.12   4
AF134686|AF134686.1 Plasmodium falciparum strain IVC10 from Cote d' Ivoire CG2 omega repeat (cg2) gene, partial cds.    28   0.13   4
AF134684|AF134684.1 Plasmodium falciparum strain SEN22 from Senegal CG2 omega repeat (cg2) gene, partial cds.    28   0.14   4
AF134688|AF134688.1 Plasmodium falciparum strain MAI5 from Mali CG2 omega repeat (cg2) gene, partial cds.    28   0.14   4
AF134691|AF134691.1 Plasmodium falciparum strain MAI19 from Mali CG2 omega repeat (cg2) gene, partial cds.    28   0.20   4
AF134698|AF134698.1 Plasmodium falciparum strain COM1 from Comoros CG2 omega repeat (cg2) gene, partial cds.    28   0.23   4
AF134697|AF134697.1 Plasmodium falciparum strain GUI1 from Guinea CG2 omega repeat (cg2) gene, partial cds.    28   0.23   4
dna update 2005.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   409   e-113
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...   358   1e-97
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...   358   1e-97
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   302   9e-81
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   273   3e-72
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   270   5e-71
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                127   3e-28
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                124   3e-27
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                122   2e-26
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   103   5e-21
protein update 2009. 5.21
PSORT 

 psg: 0.89  gvh: 0.55  alm: 0.54  top: 0.50  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for CHS280 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS280Z
3' end seq. 
>CHS280Z.Seq
NNNNNNNNNNGTTGCAANATTCNAATCAATGNNGATGANAANAANCCATGGTACCGNNGA
TGCNTGGTCCNAAATCAAACNGGTGTCATTCATACCCCCAGTAAATNTNGATGATAATAA
CGAATGTACNATTGATGCATGTACCAAANAAGGTGGTGTAACTCATACTCCAGTCAATGG
TGATGATAACAATGCCTGTACACTTGATTCCTGTTCACCATCAACTGGTGTTTCCCACAC
CCCAATTAACTGTGATGATAGTAATCCATGTACCGTAGANTCATGTTCAAATTCAACCGG
TTGTGTAAACACTCCAGTCAATGTTGATGATAATAATCCATGTACTGTAGATGCTTGTAC
CAAATCAACAGGTGTCACNCATACCCCAGTAAATGTAGATGATAACAACAAATGTACAAT
TGATGCATGTACCAAAGAAGGTGGTGTAACTCATACTCCAGTCAACACTGATGATAACAA
TGCCTGTACAATTGATTCTTGTTCACCATCAACCGGTATTTCCCACACCCCAATCAATTG
TGATGATAAAAAGGCCTGTACAGTTGATTCATGTTCAAATTCAACTGGTTGTGTAAATAC
TCCAATTTCCTGTGACGATAATAATCCATGTACTGTTGATTCTTGCGATGACTTAACTGG
TTGTTGCAATACTCCAATCAATGTTGATGATAATAATCCATGTACCATCGATGCCTGTAC
TAAATCAACAGGTGTTACTCATACCCCAGTCAATGTAGATGATAATAACAAATGTACAAT
TGATACATGTACCAAAGAT
Length of 3' end seq. 799
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -