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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS272
Library CH
(Link to library)
Clone ID CHS272
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHS272P
(Link to Original site)
Representative DNA sequence 
>CHS272 (CHS272Q) /CSM/CH/CHS2-C/CHS272Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTANAGNTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGANCAAGCTCAACATTTACAAC
GTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTT
TAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCT
TACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGA
ATGAAAATCAACAACAACANCAAGGACAACANCAAGTTCAAGCAACAAATGTTGAACAAC
AAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAAC
AAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTG
AATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTC
AAGAGAAACANCAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAAC
AACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAAC
ANGAACANAATCAAAAATAATTNAATCATT
sequence update 2002.10.25
Translated Amino Acid sequence 
iinllsnnyfffsfflxxk**k**KLILKKRNVKKK---

---ENNEITNEQDAIXQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQL
ELLLEENEEEQFSNKNLQQLNENENQQQXQGQXQVQATNVEQQIVEQLKVIKEFQRQDQQ
KKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKXQSPDQIKNQLKNIQ
HEQQIQEQQDKLNQEKNQQLLEXEXNQK*xnh
Translated Amino Acid sequence (All Frames) 
Frame A:
k**iyyqitifsflsfxxlnnrnnkn*y*kkgtlkkk---

---*k**nyq*trch*xsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpi
rtlt*re*rrtifk*kfttt**e*kstttxrttxsssnkc*ttnr*tt*syqrisktrst
ketknstrercclle*c*ksst*igc*ig*k**tresr*efssretxis*pn*ksikkys
t*ttnprttr*iksrkkstiirtxtxskiixs

Frame B:
nnkftik*lfflfflfxx*iieiikinikkker*kk---

---ENNEITNEQDAIXQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQL
ELLLEENEEEQFSNKNLQQLNENENQQQXQGQXQVQATNVEQQIVEQLKVIKEFQRQDQQ
KKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKXQSPDQIKNQLKNIQ
HEQQIQEQQDKLNQEKNQQLLEXEXNQK*xnh

Frame C:
iinllsnnyfffsfflxxk**k**KLILKKRNVKKK---

---kimklpmnkmplxklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*
nsylkrmkknnfqikiynnlmrmkinnnxkdnxkfkqqmlnnkslnnlklsknfkdkink
rnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnxnlltklkin*kifn
mnnksknnkin*ikkkinny*nxnxiknnxii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        585   e-166
SLI803 (SLI803Q) /CSM/SL/SLI8-A/SLI803Q.Seq.d/                        585   e-166
SLI655 (SLI655Q) /CSM/SL/SLI6-C/SLI655Q.Seq.d/                        585   e-166
SLH374 (SLH374Q) /CSM/SL/SLH3-D/SLH374Q.Seq.d/                        585   e-166
SLH142 (SLH142Q) /CSM/SL/SLH1-B/SLH142Q.Seq.d/                        585   e-166
SLG381 (SLG381Q) /CSM/SL/SLG3-D/SLG381Q.Seq.d/                        585   e-166
SLC743 (SLC743Q) /CSM/SL/SLC7-B/SLC743Q.Seq.d/                        585   e-166
SLB365 (SLB365Q) /CSM/SL/SLB3-C/SLB365Q.Seq.d/                        585   e-166
SLA333 (SLA333Q) /CSM/SL/SLA3-B/SLA333Q.Seq.d/                        585   e-166
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/                        585   e-166
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   537   0.0    4
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.036  7
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.045  6
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence.    48   0.26   1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence.    48   0.26   1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence.    48   0.26   1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence.    48   0.26   1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence.    48   0.26   1
DT309974|DT309974.1 JGI_CAAX1517.rev CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 3', mRNA sequence.    48   0.26   1
dna update 2005.11.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   215   1e-54
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           34   4.0
CP000806_1851(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   9.0
protein update 2009. 4.13
PSORT 

 psg: 0.39  gvh: 0.24  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall

>> prediction for CHS272 is nuc
5' end seq. ID CHS272F
5' end seq. 
>CHS272F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTANAGNTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N
Length of 5' end seq. 121
3' end seq. ID CHS272Z
3' end seq. 
>CHS272Z.Seq
NNNNNNNNNNTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGANCAAGCTCAAC
ATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAG
TTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAAT
TAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAAC
TTAATGAGAATGAAAATCAACAACAACANCAAGGACAACANCAAGTTCAAGCAACAAATG
TTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAAC
AAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAG
CTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGA
ATTTAGTTCAAGAGAAACANCAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTC
AACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAAT
TATTAGAACANGAACANAATCAAAAATAATTNAATCATT
Length of 3' end seq. 639
Connected seq. ID CHS272P
Connected seq. 
>CHS272P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTANAGNTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-TGAAAATAATGAAATTACCAATGAACAAGATGCCATTGANCAAGCTCAACATTTACAAC
GTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTT
TAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCT
TACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGA
ATGAAAATCAACAACAACANCAAGGACAACANCAAGTTCAAGCAACAAATGTTGAACAAC
AAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAAC
AAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTG
AATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTC
AAGAGAAACANCAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAAC
AACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAAC
ANGAACANAATCAAAAATAATTNAATCATT
Length of connected seq. 740
Full length Seq ID -
Full length Seq. -
Length of full length seq. -