>CHS265 (CHS265Q) /CSM/CH/CHS2-C/CHS265Q.Seq.d/
XXXXXXXXXXTTNGTGGTCCAAGTATNTCAAGTGGTTATTATAAAGATGAGGAGAAAACT
AGAGAAGAATTCAAANATGGTTGGTTCCANACTGGTGANATTGGTCGTTGGAATNGTGAN
GGTAGTTTTAGCATTGTTGATNGTAANAAAAANATNTTTAAATTATTTCAAGGTGAATAT
GTTGCAGTTGAAAANATTGAAACAATAGTTGTAAANAGTGAATACGTTGAACAAGTTTGN
ATTTATGGTGATTTTCAAAAATCATGNGTAATTGCAATCATTNATCCACATCCANAATCA
TGTAGTGAATGGGNTGGTTCAAANAAAACTGATAAANACATTAAANAAATTTGTAAAAAT
CAANATTTTATCAAAGTTGTATTGGATGATATAATTAAAAATTGCAAAAAATTTGGTTTT
CATGGATTTGAAATTCCAAAAGCAATTCATTTAACT

---XGPSXSSGYYKDEEKTREEFKXGWFXTGXIGRWNXXGSFSIVDXXKXXFKLFQGEYV
AVEXIETIVVXSEYVEQVXIYGDFQKSXVIAIIXPHPXSCSEWXGSXKTDKXIKXICKNQ
XFIKVVLDDIIKNCKKFGFHGFEIPKAIHLT

Frame A:
---xwskyxkwll*r*gen*rriqxwlvpxw*xwslex*x*f*hc*x*xkxx*iisr*ic
cs*kx*nnsckx*ir*tslxlw*fskimxncnhxstsxim**mgwfkxn**xh*xnl*ks
xfyqscig*yn*klqkiwfswi*nsksnsfn


Frame B:
---XGPSXSSGYYKDEEKTREEFKXGWFXTGXIGRWNXXGSFSIVDXXKXXFKLFQGEYV
AVEXIETIVVXSEYVEQVXIYGDFQKSXVIAIIXPHPXSCSEWXGSXKTDKXIKXICKNQ
XFIKVVLDDIIKNCKKFGFHGFEIPKAIHLT


Frame C:
---vvqvxqvviikmrrkleknsxmvgsxlvxlvvgxvxvvlallxvxkxxlnyfkvnml
qlkxlkq*l*xvntlnkfxfmvifknhx*lqsxihixnhvvngxvqxklixtlxkfvkix
ilsklywmi*lkiaknlvfmdlkfqkqfi*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS265 (CHS265Q) /CSM/CH/CHS2-C/CHS265Q.Seq.d/                        676   0.0
VHD490 (VHD490Q) /CSM/VH/VHD4-D/VHD490Q.Seq.d/                        636   0.0
VFM341 (VFM341Q) /CSM/VF/VFM3-B/VFM341Q.Seq.d/                        636   0.0
CFI593 (CFI593Q) /CSM/CF/CFI5-D/CFI593Q.Seq.d/                        636   0.0
CHO281 (CHO281Q) /CSM/CH/CHO2-D/CHO281Q.Seq.d/                        632   e-180
CFI815 (CFI815Q) /CSM/CF/CFI8-A/CFI815Q.Seq.d/                        628   e-179
CHI764 (CHI764Q) /CSM/CH/CHI7-C/CHI764Q.Seq.d/                        622   e-177
CHG452 (CHG452Q) /CSM/CH/CHG4-C/CHG452Q.Seq.d/                        622   e-177
CHR758 (CHR758Q) /CSM/CH/CHR7-C/CHR758Q.Seq.d/                        618   e-176
CHG651 (CHG651Q) /CSM/CH/CHG6-C/CHG651Q.Seq.d/                        618   e-176

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY196478|AY196478.1 Dictyostelium discoideum fatty acyl-CoA synthetase (fcsA) mRNA, complete cds.    64   1e-09  2
BQ875501|BQ875501.1 QGI8E20.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI8E20, mRNA sequence.    54   0.003  1
BQ870927|BQ870927.1 QGI10G21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI10G21, mRNA sequence.    54   0.003  1
AV542593|AV542593.1 Arabidopsis thaliana cDNA clone:RZ186f07F, 3' end.    46   0.013  2
AV563196|AV563196.1 Arabidopsis thaliana cDNA clone:SQ183a04F, 3' end.    46   0.013  2
AV518034|AV518034.1 Arabidopsis thaliana cDNA clone:APD06a08F, 3' end.    46   0.014  2
AV782884|AV782884.1 Arabidopsis thaliana cDNA clone:RAFL05-02-N23, 3'-end.    46   0.015  2
BX834957|BX834957.1 Arabidopsis thaliana Full-length cDNA 3PRIM end of clone  GSLTPGH61ZC11 of Hormone Treated Callus of strain col-0 of  Arabidopsis thaliana (thale cress).    46   0.022  2
AX458764|AX458764.1 Sequence 4 from Patent WO0209295.              46   0.041  2
AF503752|AF503752.1 Arabidopsis thaliana long chain acyl-CoA synthetase 2 (LACS2) mRNA, complete cds.    46   0.041  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ174259_1(DQ174259|pid:none) Gossypium hirsutum ACS-like protei...    95   6e-19
BC077120_1(BC077120|pid:none) Danio rerio zgc:101071, mRNA (cDNA...    93   3e-18
AK314452_1(AK314452|pid:none) Homo sapiens cDNA, FLJ95253, highl...    92   4e-18
(P33124) RecName: Full=Long-chain-fatty-acid--CoA ligase 6;     ...    92   4e-18
AK122702_1(AK122702|pid:none) Homo sapiens cDNA FLJ16173 fis, cl...    92   4e-18
AB020644_1(AB020644|pid:none) Homo sapiens mRNA for KIAA0837 pro...    92   4e-18
DQ083031_1(DQ083031|pid:none) Homo sapiens acyl-CoA synthetase l...    92   4e-18
AL596127_3(AL596127|pid:none) Mouse DNA sequence from clone RP23...    91   9e-18
AL596127_4(AL596127|pid:none) Mouse DNA sequence from clone RP23...    91   9e-18
AK122384_1(AK122384|pid:none) Mus musculus mRNA for mKIAA0837 pr...    91   9e-18

 psg: 0.25  gvh: 0.38  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHS265 is nuc

>CHS265Z.Seq
NNNNNNNNNNTTNGTGGTCCAAGTATNTCAAGTGGTTATTATAAAGATGAGGAGAAAACT
AGAGAAGAATTCAAANATGGTTGGTTCCANACTGGTGANATTGGTCGTTGGAATNGTGAN
GGTAGTTTTAGCATTGTTGATNGTAANAAAAANATNTTTAAATTATTTCAAGGTGAATAT
GTTGCAGTTGAAAANATTGAAACAATAGTTGTAAANAGTGAATACGTTGAACAAGTTTGN
ATTTATGGTGATTTTCAAAAATCATGNGTAATTGCAATCATTNATCCACATCCANAATCA
TGTAGTGAATGGGNTGGTTCAAANAAAACTGATAAANACATTAAANAAATTTGTAAAAAT
CAANATTTTATCAAAGTTGTATTGGATGATATAATTAAAAATTGCAAAAAATTTGGTTTT
CATGGATTTGAAATTCCAAAAGCAATTCATTTAACT