>CHS252 (CHS252Q) /CSM/CH/CHS2-C/CHS252Q.Seq.d/
XXXXXXXXXXTGAAGGTAGATCAATTGAAGAAACTGTTCAAGGTAATATAGAGTATAGAA
ATATTGGATTCTCTTATCCATCACGTCCAGATGTTAAAATTTTCAATAANTTCAATTTAA
CCATTAAAAAAGGTACAACCGTTGCATTGGTTGGTGATAGTGGTGGTGGTAAATCTTCAG
TGATTGGTTTATTAGAGCGTTTCTATGATCCAGATGAAGGTGAAGTTTATTTAGATGGTA
CAAATATTAAAGAGATTAATATTCATTCACTAAGAGGAAATATTGGTTTAGTATCACAAG
AACCAGTGTTATTTGCAAATTCAATCGCTGAAAATATACGTTATGGTAATGAAAATGCAA
CTATGGATCAAATTATTGAAGCTTGTAAAACCGCAAATGCTCATGATTTCATTAGTGCTT
TACCAGAGGGTTATGATACTCAAGTTGGTGAAAAAGGTGTTCAAATGTCTGGTGGTCAAA
AACAACGTATTGCAATTGCTCGTGCAATGATTAAAGATCCAAAGATTCTATTATTAGATG
AGGCCACATCGGCTTTAGATTCTCAAAATGAATTATTAGTACAACAATCAATTGAAAAAT
TAATGATTGGTCGTACCACAATTGTAATTGCTCATCGTTTATCAAC

---EGRSIEETVQGNIEYRNIGFSYPSRPDVKIFNXFNLTIKKGTTVALVGDSGGGKSSV
IGLLERFYDPDEGEVYLDGTNIKEINIHSLRGNIGLVSQEPVLFANSIAENIRYGNENAT
MDQIIEACKTANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPKILLLDE
ATSALDSQNELLVQQSIEKLMIGRTTIVIAHRLS

Frame A:
---EGRSIEETVQGNIEYRNIGFSYPSRPDVKIFNXFNLTIKKGTTVALVGDSGGGKSSV
IGLLERFYDPDEGEVYLDGTNIKEINIHSLRGNIGLVSQEPVLFANSIAENIRYGNENAT
MDQIIEACKTANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPKILLLDE
ATSALDSQNELLVQQSIEKLMIGRTTIVIAHRLS


Frame B:
---kvdqlkklfkvi*sieildslihhvqmlkfsixsi*plkkvqplhwlvivvvvnlq*
lvy*svsmiqmkvkfi*mvqilkrlifih*eeilv*yhknqcylqiqslkiyvmvmkmql
wikllklvkpqmlmislvlyqrvmilklvkkvfkclvvknnvlqllvq*lkiqrfyy*mr
phrl*ilkmny*ynnqlkn**lvvpql*llivyq


Frame C:
---r*in*rncsr*yrv*kywillsitsrc*nfq*xqfnh*krynrcigw**www*ifsd
wfirafl*sr*r*slfrwyky*rd*ysftkrkywfsitrtsvickfnr*kytlw**kcny
gsny*sl*nrkcs*fh*cftrgl*yssw*krcsnvwwskttycncscnd*rskdsiir*g
higfrfsk*iisttin*kindwsyhncncssfin

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS252 (CHS252Q) /CSM/CH/CHS2-C/CHS252Q.Seq.d/                       1255   0.0
VHO795 (VHO795Q) /CSM/VH/VHO7-D/VHO795Q.Seq.d/                       1215   0.0
VHE535 (VHE535Q) /CSM/VH/VHE5-B/VHE535Q.Seq.d/                       1176   0.0
VHH755 (VHH755Q) /CSM/VH/VHH7-C/VHH755Q.Seq.d/                        906   0.0
AHB224 (AHB224Q) /CSM/AH/AHB2-A/AHB224Q.Seq.d/                        900   0.0
CHE875 (CHE875Q) /CSM/CH/CHE8-D/CHE875Q.Seq.d/                        761   0.0
CHK485 (CHK485Q) /CSM/CH/CHK4-D/CHK485Q.Seq.d/                        577   e-164
AHJ254 (AHJ254Q) /CSM/AH/AHJ2-C/AHJ254Q.Seq.d/                        577   e-164
VHC325 (VHC325Q) /CSM/VH/VHC3-B/VHC325Q.Seq.d/                        329   3e-89
VSE737 (VSE737Q) /CSM/VS/VSE7-B/VSE737Q.Seq.d/                        107   2e-22

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF466305|AF466305.1 Dictyostelium discoideum ABC transporter AbcB2 (abcB2) gene, complete cds.  1239   0.0    1
AF466304|AF466304.1 Dictyostelium discoideum ABC transporter AbcB1 (abcB1) gene, complete cds.   105   1e-34  5
AF466306|AF466306.1 Dictyostelium discoideum ABC transporter AbcB3 (abcB3) gene, complete cds.    96   2e-33  5
AF466307|AF466307.2 Dictyostelium discoideum ABC transporter AbcB4 (abcB4) gene, complete cds.    80   7e-28  5
CZ539774|CZ539774.1 SRAA-aad27f12.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    44   2e-11  5
L26287|L26287.1 Schistosoma mansoni SMDR2 gene, complete cds.      52   9e-11  4
BQ622139|BQ622139.1 fch1c.pk004.i5 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    62   1e-10  2
BJ757245|BJ757245.1 Caenorhabditis elegans cDNA clone:yk1499f09 : 5' end.    54   7e-10  2
BJ119927|BJ119927.2 Caenorhabditis elegans cDNA clone:yk1249f03 : 5' end, single read.    54   8e-10  2
Z81484|Z81484.1 Caenorhabditis elegans Cosmid C47A10.              54   6e-09  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF466305_1(AF466305|pid:none) Dictyostelium discoideum ABC trans...   407   e-112
EF521414_1(EF521414|pid:none) Mytilus californianus ABCB/p-glyco...   269   4e-71
(Q9LJX0) RecName: Full=Multidrug resistance protein 11; AltName:...   268   1e-70
AK117168_1(AK117168|pid:none) Arabidopsis thaliana At3g28860 mRN...   268   1e-70
AF540384_1(AF540384|pid:none) Arabidopsis thaliana MDR-like p-gl...   268   1e-70
AK103526_1(AK103526|pid:none) Oryza sativa Japonica Group cDNA c...   265   8e-70
AF466307_1(AF466307|pid:none) Dictyostelium discoideum ABC trans...   265   8e-70
AJ535059_1(AJ535059|pid:none) Oryza sativa (japonica cultivar-gr...   265   8e-70
AY582535_1(AY582535|pid:none) Rattus norvegicus multidrug resist...   265   1e-69
EU161279_1(EU161279|pid:none) Solanum lycopersicum L04 (MDR1) mR...   264   2e-69

 psg: 0.75  gvh: 0.43  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHS252 is cyt

>CHS252Z.Seq
NNNNNNNNNNTGAAGGTAGATCAATTGAAGAAACTGTTCAAGGTAATATAGAGTATAGAA
ATATTGGATTCTCTTATCCATCACGTCCAGATGTTAAAATTTTCAATAANTTCAATTTAA
CCATTAAAAAAGGTACAACCGTTGCATTGGTTGGTGATAGTGGTGGTGGTAAATCTTCAG
TGATTGGTTTATTAGAGCGTTTCTATGATCCAGATGAAGGTGAAGTTTATTTAGATGGTA
CAAATATTAAAGAGATTAATATTCATTCACTAAGAGGAAATATTGGTTTAGTATCACAAG
AACCAGTGTTATTTGCAAATTCAATCGCTGAAAATATACGTTATGGTAATGAAAATGCAA
CTATGGATCAAATTATTGAAGCTTGTAAAACCGCAAATGCTCATGATTTCATTAGTGCTT
TACCAGAGGGTTATGATACTCAAGTTGGTGAAAAAGGTGTTCAAATGTCTGGTGGTCAAA
AACAACGTATTGCAATTGCTCGTGCAATGATTAAAGATCCAAAGATTCTATTATTAGATG
AGGCCACATCGGCTTTAGATTCTCAAAATGAATTATTAGTACAACAATCAATTGAAAAAT
TAATGATTGGTCGTACCACAATTGTAATTGCTCATCGTTTATCAAC