>CHS243 (CHS243Q) /CSM/CH/CHS2-B/CHS243Q.Seq.d/
XXXXXXXXXXCCCACCACCATTACTACTACTACTACAAATAGTTATCATAATCAAAATAG
TAAAAAAGGTTTATTAAGATTATATATAGATGATTTTGTTCATAGAAACTTTTTACAACA
TATAAAGAATGATTATAAGGATAGATTCGCTCATTCAATTGAAAGTACAGAAGCATTCAA
ACCATTGGAAAGATATAAATTAGTATTTAGATTAAAAGAAACTAAACCAATTTTAAATAG
TACCTTACAAATATTTCAATTTGTTATTGAACTTTTCTCTGATATTGTGGCTATGAGTCA
TTATGTCGTAGAGTTTGGTGCAATCATTCAAGTATCACTCTTAAGATATTATGAAAAATG
TTTAAGTAAATTCAGTCAAGAAATAGATCCAACATTAACTAATCAACTATTGAATACAGA
TCTCTATAAATATCTATTAGCATCATTAGCTGTAAGTTCAAAGAAACAAGATGTTGCTAA
ATTTCAAGATTCAAGAGAGGAAGAATATGAATTTAAATTAGAGTCTGATTTATA

---TTITTTTTNSYHNQNSKKGLLRLYIDDFVHRNFLQHIKNDYKDRFAHSIESTEAFKP
LERYKLVFRLKETKPILNSTLQIFQFVIELFSDIVAMSHYVVEFGAIIQVSLLRYYEKCL
SKFSQEIDPTLTNQLLNTDLYKYLLASLAVSSKKQDVAKFQDSREEEYEFKLESDL

Frame A:
---ppplllllqiviiikivkkvy*dyi*milfietfyni*rmiiridsliqlkvqkhsn
hwkdin*yld*kklnqf*ivpykyfnlllnfslilwl*vims*slvqsfkyhs*dimknv
*vnsvkk*iqh*liny*iqisiniy*hh*l*vqrnkmllnfkiqerknmnln*sliy


Frame B:
---hhhyyyyyk*ls*sk**krfikiiyr*fcs*klfttyke*l*g*irsfn*kyrsiqt
igki*isi*ikrn*tnfk*yltnisicy*tfl*ycgyeslcrrvwcnhssitlkil*kmf
k*iqsrnrsnin*stieyrsl*isisiisckfketrcc*isrfkrgri*i*irv*fi


Frame C:
---TTITTTTTNSYHNQNSKKGLLRLYIDDFVHRNFLQHIKNDYKDRFAHSIESTEAFKP
LERYKLVFRLKETKPILNSTLQIFQFVIELFSDIVAMSHYVVEFGAIIQVSLLRYYEKCL
SKFSQEIDPTLTNQLLNTDLYKYLLASLAVSSKKQDVAKFQDSREEEYEFKLESDL

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS243 (CHS243Q) /CSM/CH/CHS2-B/CHS243Q.Seq.d/                       1039   0.0
AHM468 (AHM468Q) /CSM/AH/AHM4-C/AHM468Q.Seq.d/                       1027   0.0
VHA469 (VHA469Q) /CSM/VH/VHA4-C/VHA469Q.Seq.d/                       1005   0.0
SLD201 (SLD201Q) /CSM/SL/SLD2-A/SLD201Q.Seq.d/                         42   0.008
VHQ149 (VHQ149Q) /CSM/VH/VHQ1-C/VHQ149Q.Seq.d/                         40   0.034
VHK645 (VHK645Q) /CSM/VH/VHK6-B/VHK645Q.Seq.d/                         40   0.034
VHD822 (VHD822Q) /CSM/VH/VHD8-A/VHD822Q.Seq.d/                         40   0.034
VFD827 (VFD827Q) /CSM/VF/VFD8-B/VFD827Q.Seq.d/                         40   0.034
VFD242 (VFD242Q) /CSM/VF/VFD2-B/VFD242Q.Seq.d/                         40   0.034
SLJ581 (SLJ581Q) /CSM/SL/SLJ5-D/SLJ581Q.Seq.d/                         40   0.034

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC168257|AC168257.2 Strongylocentrotus purpuratus clone R3-1001G4, WORKING DRAFT SEQUENCE, 42 unordered pieces.    54   0.003  1
AC168343|AC168343.2 Strongylocentrotus purpuratus clone R3-58A11, WORKING DRAFT SEQUENCE, 27 unordered pieces.    54   0.003  1
CR318636|CR318636.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-249N13.    42   0.007  3
AC005969|AC005969.4 Homo sapiens chromosome 17, clone hRPK.215_P_18, complete sequence.    42   0.011  3
CR376733|CR376733.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-189O24.    50   0.015  3
CR352261|CR352261.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.024  7
AC112902|AC112902.4 Rattus norvegicus clone CH230-210F1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42   0.031  5
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   0.041  9
AC168418|AC168418.2 Strongylocentrotus purpuratus clone R3-4002B2, WORKING DRAFT SEQUENCE, 37 unordered pieces.    48   0.042  3
AC168847|AC168847.2 Strongylocentrotus purpuratus clone R3-1107B6, WORKING DRAFT SEQUENCE, 85 unordered pieces.    50   0.047  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P76) RecName: Full=Exocyst complex component 4; AltName: Ful...   327   8e-89
BT054832_1(BT054832|pid:none) Zea mays full-length cDNA clone ZM...    40   0.027
(Q93YU5) RecName: Full=Probable exocyst complex component 4; Alt...    40   0.027
EF144356_1(EF144356|pid:none) Populus trichocarpa clone PX0015_P...    40   0.035
FM992695_70(FM992695|pid:none) Candida dubliniensis CD36 chromos...    35   1.5
EU361927_1(EU361927|pid:none) Daniellia klainei tRNA-Lys (trnK) ...    34   1.9
FM992689_882(FM992689|pid:none) Candida dubliniensis CD36 chromo...    34   2.5
AY327402_92(AY327402|pid:none) Choristoneura fumiferana defectiv...    33   3.3
AE010300_3503(AE010300|pid:none) Leptospira interrogans serovar ...    33   3.3
AM270053_88(AM270053|pid:none) Aspergillus niger contig An03c012...    33   4.3

 psg: 0.87  gvh: 0.23  alm: 0.36  top: 0.63  tms: 0.00  mit: 0.36  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: plasma membrane

>> prediction for CHS243 is nuc

>CHS243Z.Seq
NNNNNNNNNNCCCACCACCATTACTACTACTACTACAAATAGTTATCATAATCAAAATAG
TAAAAAAGGTTTATTAAGATTATATATAGATGATTTTGTTCATAGAAACTTTTTACAACA
TATAAAGAATGATTATAAGGATAGATTCGCTCATTCAATTGAAAGTACAGAAGCATTCAA
ACCATTGGAAAGATATAAATTAGTATTTAGATTAAAAGAAACTAAACCAATTTTAAATAG
TACCTTACAAATATTTCAATTTGTTATTGAACTTTTCTCTGATATTGTGGCTATGAGTCA
TTATGTCGTAGAGTTTGGTGCAATCATTCAAGTATCACTCTTAAGATATTATGAAAAATG
TTTAAGTAAATTCAGTCAAGAAATAGATCCAACATTAACTAATCAACTATTGAATACAGA
TCTCTATAAATATCTATTAGCATCATTAGCTGTAAGTTCAAAGAAACAAGATGTTGCTAA
ATTTCAAGATTCAAGAGAGGAAGAATATGAATTTAAATTAGAGTCTGATTTATA