>CHS229 (CHS229Q) /CSM/CH/CHS2-B/CHS229Q.Seq.d/
XXXXXXXXXXATATATAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAG
ATGGAAACAGAGTTAACCTTCCCATTGGTTACCAATAAACATCGTAATCATATTTTACGT
CAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGT
TTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTG
AAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACAC
AATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTNTCAATTTGAACAATTGATTCGT
TGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAA
TTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAAC
GGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGTGAT
GCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAAAAAAA
TAAAAATAAAATTTAAAATTAATTTTTAGAT

---i*slnqkhqll*hvl*METELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGL
KIARSNGLVGIIAVELFVVKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTXQFEQLIRC
VCGLPLGSVDFTKRISEAEFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDA
KEGRKMGHVTQQ*kkn*kk*k*nlklifr

Frame A:
---yiefeseasvivaraldgnrvnlpigyq*ts*syftsnhctssiariys*tsq*nwf
kdcsfqwfgwyycrriicsekq*nrsilfngk*igtkttq*wsldhrrlcnlsi*tidsl
clwfafgfsrfh*tyk*s*iysttnstncndksfrsrs*rlgkntsn*rftssylc*r*c
krrs*ngscystikkklkkikikfkinf*


Frame B:
---i*slnqkhqll*hvl*METELTFPLVTNKHRNHILRQTIAPAQLPEYIHKQANEIGL
KIARSNGLVGIIAVELFVVKNNETGQYSLMVNELAPRPHNSGHWTIEGCVTXQFEQLIRC
VCGLPLGSVDFTKRISEAEFIQQQIPPIVMTNLLGQEVNGWEKILQTKGSHLHIYAKGDA
KEGRKMGHVTQQ*kkn*kk*k*nlklifr


Frame C:
---yrv*irsisycstcfrwkqs*pshwlpiniviifyvkplhqlncqnifinkpmklv*
rllvpmvwlvllpsnyl**ktmkqvntl*w*mnwhqdhtivvigpskvv*pxnlnn*fvv
fvvclwvqsislnv*vklnlfnnkfhql**qif*vkkltvgkkyfklkvhifismlkvmq
kkvvkwvmllnnkkkikknknki*n*fld

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS229 (CHS229Q) /CSM/CH/CHS2-B/CHS229Q.Seq.d/                       1124   0.0
VHN643 (VHN643Q) /CSM/VH/VHN6-B/VHN643Q.Seq.d/                       1108   0.0
VHH651 (VHH651Q) /CSM/VH/VHH6-C/VHH651Q.Seq.d/                       1108   0.0
VHB561 (VHB561Q) /CSM/VH/VHB5-C/VHB561Q.Seq.d/                       1108   0.0
VHQ389 (VHQ389Q) /CSM/VH/VHQ3-D/VHQ389Q.Seq.d/                       1100   0.0
SSK605 (SSK605Q) /CSM/SS/SSK6-A/SSK605Q.Seq.d/                       1084   0.0
SFE842 (SFE842Q) /CSM/SF/SFE8-B/SFE842Q.Seq.d/                       1070   0.0
VFO656 (VFO656Q) /CSM/VF/VFO6-C/VFO656Q.Seq.d/                       1059   0.0
SFB103 (SFB103Q) /CSM/SF/SFB1-A/SFB103Q.Seq.d/                       1059   0.0
SFL170 (SFL170Q) /CSM/SF/SFL1-C/SFL170Q.Seq.d/                       1007   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG043407|BG043407.1 su15b05.y1 Gm-c1066 Glycine max cDNA clone GENOME SYSTEMS CLONE ID:sequence.    52   0.014  1
CX963471|CX963471.1 JGI_CAAO12499.fwd NIH_XGC_tropTe5 Xenopus tropicalis cDNA clone CAAO12499 5', mRNA sequence.    42   1.8    2
AC105930|AC105930.2 Magnaporthe grisea chromosome 7 clone 14G09, *** SEQUENCING IN PROGRESS ***.    44   3.2    2
BM037950|BM037950.1 S119d01 Stem library from Oryza sativa (3-5 leaf stage) Oryza sativa cDNA clone S119d01, mRNA sequence.    44   3.4    1
AQ162563|AQ162563.1 mgxb0013B15r CUGI Rice Blast BAC Library Magnaporthe grisea genomic clone mgxb0013B15r, genomic survey sequence.    44   3.4    1
CW222532|CW222532.1 104_658_11202424_148_37183_064 Sorghum methylation filtered library (LibID: 104) Sorghum bicolor genomic clone 11202424, genomic survey sequence.    44   3.4    1
AE008692|AE008692.1 Zymomonas mobilis subsp. mobilis ZM4, complete genome.    32   5.1    2
CR562175|CR562175.1 Xenopus tropicalis EST, clone THdA011k22 3'.    40   6.1    2
BW378472|BW378472.1 Ciona intestinalis cDNA, clone:cidg819b15, 3'end, single read.    30   8.4    2
BW180501|BW180501.1 Ciona intestinalis cDNA, clone:rciht019f18, 3' end, single read.    30   8.4    2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050060_1(AM050060|pid:none) Azospirillum brasilense partial pu...   153   5e-38
CP000943_2544(CP000943|pid:none) Methylobacterium sp. 4-46, comp...   144   7e-35
AP009384_2414(AP009384|pid:none) Azorhizobium caulinodans ORS 57...   143   4e-33
CP000774_2062(CP000774|pid:none) Parvibaculum lavamentivorans DS...   135   8e-33
AP006627_1021(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c...   140   3e-32
CP000319_1161(CP000319|pid:none) Nitrobacter hamburgensis X14, c...   135   4e-32
CU234118_1139(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl...   135   6e-32
AE008692_1421(AE008692|pid:none) Zymomonas mobilis subsp. mobili...   138   1e-31
AL009126_674(AL009126|pid:none) Bacillus subtilis subsp. subtili...   138   1e-31
CP000560_622(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...   138   1e-31

 psg: 0.75  gvh: 0.36  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CHS229 is cyt

>CHS229Z.Seq
NNNNNNNNNNATATATAGAGTTTGAATCAGAAGCATCAGTTATTGTAGCACGTGCTTTAG
ATGGAAACAGAGTTAACCTTCCCATTGGTTACCAATAAACATCGTAATCATATTTTACGT
CAAACCATTGCACCAGCTCAATTGCCAGAATATATTCATAAACAAGCCAATGAAATTGGT
TTAAAGATTGCTCGTTCCAATGGTTTGGTTGGTATTATTGCCGTCGAATTATTTGTAGTG
AAAAACAATGAAACAGGTCAATACTCTTTAATGGTAAATGAATTGGCACCAAGACCACAC
AATAGTGGTCATTGGACCATCGAAGGTTGTGTAACCTNTCAATTTGAACAATTGATTCGT
TGTGTTTGTGGTTTGCCTTTGGGTTCAGTCGATTTCACTAAACGTATAAGTGAAGCTGAA
TTTATTCAACAACAAATTCCACCAATTGTAATGACAAATCTTTTAGGTCAAGAAGTTAAC
GGTTGGGAAAAAATACTTCAAACTAAAGGTTCACATCTTCATATCTATGCTAAAGGTGAT
GCAAAAGAAGGTCGTAAAATGGGTCATGTTACTCAACAATAAAAAAAAAATTAAAAAAAA
TAAAAATAAAATTTAAAATTAATTTTTAGAT