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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS217
Library CH
(Link to library)
Clone ID CHS217
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15351-1|Contig-U16514-1
Original site URL
Representative seq. ID CHS217P
(Link to Original site)
Representative DNA sequence 
>CHS217 (CHS217Q) /CSM/CH/CHS2-A/CHS217Q.Seq.d/
ATCGTTTAACGAGTTTAAAAACTTTGGATCTTAGTTTCAATCAAATTACAGATATTTCAC
CACAAACAAACCTCCACCAAATGACAAACTTGGTTGAGCTTCGTCTTCGTTACAATCAAC
TCTCATCATTACCACAAAATATGTTGGAATCAAATCATTTACAGGTACTTTGGTTGGAAG
GTAATAGATTACCATTGAATAAAGCAATTCTCAAGAAATCACCCTCTGAAATCTTATCAT
TTCTTCGTGGCTATAAACCACCCAATAAAAAGGTGAACGATAAAGTCATCAACAAAGCGC
ATGTTAACCCTGCACTTCCACCAATTGATACAGCTTCAACCATTGCAGTAGCACAAGTTT
TTGCACAAAAAGAACTTGACACTAAAAAAAGAAAGAAGGAGGAATCTAGATGATTTTAAA
AAACAACATATTTGAAAACAGAACTTAAAATTGAAACAACTTTGANAAGGAATTGCAAAT
TGCAAATGCCAAGGCAACCCAAATTCGAGXXXXXXXXXXAGGTGAAAGATTACCAATGCC
TGCTTTGGTGTCCACCAAAGTATGCAGCCTTGATGAATAGATGTTGGGAAACCGATCCCA
CTCATCGTCCATCTTTTCCAGAGATTTTACCAAATTATGGAGGGAATGATCTNTGAATTT
CAAAAAGAGAAGAAGGAATCAATAGCGCAAGGTAGACCAATACCTTATGTTGGCCCACCT
GAAAAAGATCCATCCAATAAACAACCACCACAAAATATGGCANCAACAATTCAACAACAA
TTGGCACAACAACAACCTCAACAATTATTAGAACAACAAATACTCCTACAAGTTNAACAA
CAAGCTCAACTCCAACACTTACAACAACAGTTGGAGCAACAACAAAAATTACAACAACAA
TTACAACAACAAATAGCACATCCAAATAATCCAAATAATTTTTATTTTCAACAACAACTT
CAACAGCAACAATTTCAACAACAACTTCAACAACACCAACAACATTTTCAACAACAACAA
CAACAACAACANCANCAACAGCAACAGCAGCANCAACAACAACATACAACAGCAACAACA
TTTTACAACAAACTGGGTCACCAATAGATAATAGATTAAATTACAACTTCAACAATTCAA
ATAATAGTGATATCCATACCAATGCAACAAGTAAAACAA
sequence update 2002.10.25
Translated Amino Acid sequence 
rltslktldlsfnqitdispqtnlhqmtnlvelrlrynqlsslpqnmlesnhlqvlwleg
nrlplnkailkkspseilsflrgykppnkkvndkvinkahvnpalppidtastiavaqvf
aqkeldtkkrkkeesr*f*KTTYLKTELKIETTLXRNCKLQMPRQPKFE---

---VKDYQCLLWCPPKYAALMNRCWETDPTHRPSFPEILPNYGGNDL*iskreeginsar
*tntlcwpt*krsiq*ttttkygxnnsttigttttstiirttntptsxttsstptltttv
gattkitttitttnstsk*sk*flfstttstatistttsttpttfstttttttxxtataa
xtttynsnnilqqtgspidnrlnynfnnsnnsdihtnatskt
Translated Amino Acid sequence (All Frames) 
Frame A:
iv*rv*klwilvsiklqifhhkqtstk*qtwlsfvfvtinshhyhkicwnqiiyryfgwk
vidyh*ikqfsrnhplksyhffvainhpikr*tiksstkrmltlhfhqliqlqplq*hkf
lhkknltlkkerrrnlddfkkqhi*kqnlklkql*xgianckcqgnpns---

---r*kitnacfgvhqsmqp**idvgkpiplivhlfqrfyqimegmixefqkekkesiaq
grpipyvgppekdpsnkqppqnmaxtiqqqlaqqqpqqlleqqillqvxqqaqlqhlqqq
leqqqklqqqlqqqiahpnnpnnfyfqqqlqqqqfqqqlqqhqqhfqqqqqqqxxqqqqq
xqqqhttattfynklghq*iid*ittstiqiivisipmqqvkq

Frame B:
sfnefknfgs*fqsnyryfttnkpppndklg*assslqstliittkyvgiksftgtlvgr
**itie*snsqeitl*nliisswl*ttq*kger*shqqsac*pctstn*ysfnhcsstsf
ctkrt*h*kkkeggi*milknnifenrt*n*nnfxkelqianakatqir---

---gerlpmpalvstkvcslde*mlgnrshsssifsrdftklwre*sxnfkkrrrnq*rk
vdqylmlahlkkihpinnhhkiwxqqfnnnwhnnnlnny*nnkysykxnnklnsntynns
wsnnknynnnynnk*hiqiiqiififnnnfnsnnfnnnfnntnnifnnnnnnnxxnsnss
xnnniqqqqhfttnwvtnr**iklqlqqfk***ypyqcnk*n

Frame C:
rltslktldlsfnqitdispqtnlhqmtnlvelrlrynqlsslpqnmlesnhlqvlwleg
nrlplnkailkkspseilsflrgykppnkkvndkvinkahvnpalppidtastiavaqvf
aqkeldtkkrkkeesr*f*KTTYLKTELKIETTLXRNCKLQMPRQPKFE---

---VKDYQCLLWCPPKYAALMNRCWETDPTHRPSFPEILPNYGGNDL*iskreeginsar
*tntlcwpt*krsiq*ttttkygxnnsttigttttstiirttntptsxttsstptltttv
gattkitttitttnstsk*sk*flfstttstatistttsttpttfstttttttxxtataa
xtttynsnnilqqtgspidnrlnynfnnsnnsdihtnatskt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS217 (CHS217Q) /CSM/CH/CHS2-A/CHS217Q.Seq.d/                       1348   0.0
CHK563 (CHK563Q) /CSM/CH/CHK5-C/CHK563Q.Seq.d/                        759   0.0
AFN223 (AFN223Q) /CSM/AF/AFN2-A/AFN223Q.Seq.d/                        648   0.0
CFI727 (CFI727Q) /CSM/CF/CFI7-B/CFI727Q.Seq.d/                        381   e-104
SHE630 (SHE630Q) /CSM/SH/SHE6-B/SHE630Q.Seq.d/                        375   e-102
AHK110 (AHK110Q) /CSM/AH/AHK1-A/AHK110Q.Seq.d/                        351   2e-95
VHF847 (VHF847Q) /CSM/VH/VHF8-B/VHF847Q.Seq.d/                        333   4e-90
AFC430 (AFC430Q) /CSM/AF/AFC4-B/AFC430Q.Seq.d/                        139   1e-31
AFA277 (AFA277Q) /CSM/AF/AFA2-D/AFA277Q.Seq.d/                        139   1e-31
SLG573 (SLG573Q) /CSM/SL/SLG5-D/SLG573Q.Seq.d/                        133   7e-30
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U82512|U82512.1 Dictyostelium discoideum random slug cDNA21 protein (rsc21) mRNA, partial cds.   735   0.0    1
AL137245|AL137245.11 Human DNA sequence from clone RP11-196I2 on chromosome 13.    42   1.2    3
DQ067598|DQ067598.1 Cocksfoot streak virus isolate UK-1-04 GHCP630B HC-Pro protein (HC-Pro) gene, partial cds.    46   1.6    1
DQ067597|DQ067597.1 Cocksfoot streak virus isolate UK-1-04 GHCP630A HC-Pro protein (HC-Pro) gene, partial cds.    46   1.6    1
DQ067593|DQ067593.1 Cocksfoot streak virus isolate UK-1-04 GHCP619C HC-Pro protein (HC-Pro) gene, partial cds.    46   1.6    1
DQ067592|DQ067592.1 Cocksfoot streak virus isolate UK-1-04 GHCP619B HC-Pro protein (HC-Pro) gene, partial cds.    46   1.6    1
DQ067591|DQ067591.1 Cocksfoot streak virus isolate UK-1-04 GHCP619A HC-Pro protein (HC-Pro) gene, partial cds.    46   1.6    1
DQ067590|DQ067590.1 Cocksfoot streak virus isolate UK-1-04 FHCP54C HC-Pro protein (HC-Pro) gene, partial cds.    46   1.6    1
DQ067589|DQ067589.1 Cocksfoot streak virus isolate UK-1-04 FHCP54B HC-Pro protein (HC-Pro) gene, partial cds.    46   1.6    1
DQ067588|DQ067588.1 Cocksfoot streak virus isolate UK-1-04 FHCP54A HC-Pro protein (HC-Pro) gene, partial cds.    46   1.6    1
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82512_1(U82512|pid:none) Dictyostelium discoideum DrkD (drkD) m...   248   2e-64
CP000828_1962(CP000828|pid:none) Acaryochloris marina MBIC11017,...    53   2e-05
CP000828_1899(CP000828|pid:none) Acaryochloris marina MBIC11017,...    52   4e-05
CP001037_5526(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    52   4e-05
AD1822(AD1822) leucine-rich-repeat protein [imported] - Nostoc s...    51   7e-05
AE016823_808(AE016823|pid:none) Leptospira interrogans serovar C...    50   1e-04
AE010300_3317(AE010300|pid:none) Leptospira interrogans serovar ...    50   1e-04
CP000117_1490(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    49   4e-04
AY444997_1(AY444997|pid:none) Paracoccidioides brasiliensis aden...    49   4e-04
CP001037_1134(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    48   7e-04
protein update 2009. 4.13
PSORT 

 psg: 0.58  gvh: 0.34  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHS217 is nuc
5' end seq. ID CHS217F
5' end seq. 
>CHS217F.Seq
ATCGTTTAACGAGTTTAAAAACTTTGGATCTTAGTTTCAATCAAATTACAGATATTTCAC
CACAAACAAACCTCCACCAAATGACAAACTTGGTTGAGCTTCGTCTTCGTTACAATCAAC
TCTCATCATTACCACAAAATATGTTGGAATCAAATCATTTACAGGTACTTTGGTTGGAAG
GTAATAGATTACCATTGAATAAAGCAATTCTCAAGAAATCACCCTCTGAAATCTTATCAT
TTCTTCGTGGCTATAAACCACCCAATAAAAAGGTGAACGATAAAGTCATCAACAAAGCGC
ATGTTAACCCTGCACTTCCACCAATTGATACAGCTTCAACCATTGCAGTAGCACAAGTTT
TTGCACAAAAAGAACTTGACACTAAAAAAAGAAAGAAGGAGGAATCTAGATGATTTTAAA
AAACAACATATTTGAAAACAGAACTTAAAATTGAAACAACTTTGANAAGGAATTGCAAAT
TGCAAATGCCAAGGCAACCCAAATTCGAGNNNNNNNNNN
Length of 5' end seq. 519
3' end seq. ID CHS217Z
3' end seq. 
>CHS217Z.Seq
NNNNNNNNNNAGGTGAAAGATTACCAATGCCTGCTTTGGTGTCCACCAAAGTATGCAGCC
TTGATGAATAGATGTTGGGAAACCGATCCCACTCATCGTCCATCTTTTCCAGAGATTTTA
CCAAATTATGGAGGGAATGATCTNTGAATTTCAAAAAGAGAAGAAGGAATCAATAGCGCA
AGGTAGACCAATACCTTATGTTGGCCCACCTGAAAAAGATCCATCCAATAAACAACCACC
ACAAAATATGGCANCAACAATTCAACAACAATTGGCACAACAACAACCTCAACAATTATT
AGAACAACAAATACTCCTACAAGTTNAACAACAAGCTCAACTCCAACACTTACAACAACA
GTTGGAGCAACAACAAAAATTACAACAACAATTACAACAACAAATAGCACATCCAAATAA
TCCAAATAATTTTTATTTTCAACAACAACTTCAACAGCAACAATTTCAACAACAACTTCA
ACAACACCAACAACATTTTCAACAACAACAACAACAACAACANCANCAACAGCAACAGCA
GCANCAACAACAACATACAACAGCAACAACATTTTACAACAAACTGGGTCACCAATAGAT
AATAGATTAAATTACAACTTCAACAATTCAAATAATAGTGATATCCATACCAATGCAACA
AGTAAAACAA
Length of 3' end seq. 670
Connected seq. ID CHS217P
Connected seq. 
>CHS217P.Seq
ATCGTTTAACGAGTTTAAAAACTTTGGATCTTAGTTTCAATCAAATTACAGATATTTCAC
CACAAACAAACCTCCACCAAATGACAAACTTGGTTGAGCTTCGTCTTCGTTACAATCAAC
TCTCATCATTACCACAAAATATGTTGGAATCAAATCATTTACAGGTACTTTGGTTGGAAG
GTAATAGATTACCATTGAATAAAGCAATTCTCAAGAAATCACCCTCTGAAATCTTATCAT
TTCTTCGTGGCTATAAACCACCCAATAAAAAGGTGAACGATAAAGTCATCAACAAAGCGC
ATGTTAACCCTGCACTTCCACCAATTGATACAGCTTCAACCATTGCAGTAGCACAAGTTT
TTGCACAAAAAGAACTTGACACTAAAAAAAGAAAGAAGGAGGAATCTAGATGATTTTAAA
AAACAACATATTTGAAAACAGAACTTAAAATTGAAACAACTTTGANAAGGAATTGCAAAT
TGCAAATGCCAAGGCAACCCAAATTCGAG----------AGGTGAAAGATTACCAATGCC
TGCTTTGGTGTCCACCAAAGTATGCAGCCTTGATGAATAGATGTTGGGAAACCGATCCCA
CTCATCGTCCATCTTTTCCAGAGATTTTACCAAATTATGGAGGGAATGATCTNTGAATTT
CAAAAAGAGAAGAAGGAATCAATAGCGCAAGGTAGACCAATACCTTATGTTGGCCCACCT
GAAAAAGATCCATCCAATAAACAACCACCACAAAATATGGCANCAACAATTCAACAACAA
TTGGCACAACAACAACCTCAACAATTATTAGAACAACAAATACTCCTACAAGTTNAACAA
CAAGCTCAACTCCAACACTTACAACAACAGTTGGAGCAACAACAAAAATTACAACAACAA
TTACAACAACAAATAGCACATCCAAATAATCCAAATAATTTTTATTTTCAACAACAACTT
CAACAGCAACAATTTCAACAACAACTTCAACAACACCAACAACATTTTCAACAACAACAA
CAACAACAACANCANCAACAGCAACAGCAGCANCAACAACAACATACAACAGCAACAACA
TTTTACAACAAACTGGGTCACCAATAGATAATAGATTAAATTACAACTTCAACAATTCAA
ATAATAGTGATATCCATACCAATGCAACAAGTAAAACAA
Length of connected seq. 1169
Full length Seq ID -
Full length Seq. -
Length of full length seq. -