>CHS203 (CHS203Q) /CSM/CH/CHS2-A/CHS203Q.Seq.d/
XXXXXXXXXXATTTTCACTGATGATAAAAAAGGTTTTTCAAATTGTTTTGAAAATAGTAC
ATCAATTGAAATTTGGTCAAATACTTTAGAAATTATGAAACAATTAAGAATTGATCAACA
TGAAAATGAAGATCAATCTGGTGAATCAAGTATTACATTTGAAATTTCAGAATTATTTAT
ATTGGATTTAATTGGTAAAGCAATTGGTCCATTGGAAACTATTGAATTGGTTTGCAAATT
TTCAGAAATGTTTGAAAAGAGTAAAATTGAAACTAAATTATTATCAGATTGGATTAAATT
TGGAAAATGGTCGTTGTATGATAGACCAAAGTTATCATATGATATCTTATCACTTTTGGA
TAGTCATTTATGGTTAAAGAAACCCTTGACCATTTCACCTCAATTCTTAACTATGATTGG
TCCTGAATTGGACCCAACTTTACCAAATAATCCATTCAAAGAATTCTTTAATAAACTTGG
AACTTCAAGTCATGATAGTGGTGATAATATCGATTTTAAAATACCTTCATTCTTTGAAGA
TAATTCACGTAGACATTGGGGTGTAGAAACTGAATTATCAACTGGTTCTTGTCCAATTTG
TACCTTATCTTTAGCTGAAAATCCTGAATCTTCATTTTTAGGTTCAACACCCGCTACAAT
TATAGTATTCCCAAATTGTGGTCATTCATATCATCATTGTTGTATNAAGNATCAAGGTTG
TATGTTA

---FTDDKKGFSNCFENSTSIEIWSNTLEIMKQLRIDQHENEDQSGESSITFEISELFIL
DLIGKAIGPLETIELVCKFSEMFEKSKIETKLLSDWIKFGKWSLYDRPKLSYDILSLLDS
HLWLKKPLTISPQFLTMIGPELDPTLPNNPFKEFFNKLGTSSHDSGDNIDFKIPSFFEDN
SRRHWGVETELSTGSCPICTLSLAENPESSFLGSTPATIIVFPNCGHSYHHCCXKXQGCM
L

Frame A:
---fslmikkvfqivlkivhqlkfgqil*kl*nn*elinmkmkinlvnqvlhlkfqnyly
wi*lvkqlvhwkllnwfanfqkclkrvklklnyyqiglnlengrcmidqsyhmisyhfwi
viyg*rnp*pfhlns*l*lvlnwtqlyqiihsknslinlelqvmivviisilkylhslki
ihvdigv*klnyqlvlvqfvpyl*lkilnlhf*vqhplql*ysqivvihiiivvxxikvv
c


Frame B:
---fh***krffklf*k*yin*nlvkyfrnyetikn*st*k*rsiw*ikyyi*nfriiyi
gfnw*snwsigny*iglqifrnv*ke*n*n*iiirld*iwkmvvv**tkvii*ylitfg*
sfmvketldhftsilnydws*igpnftk*siqril**twnfks**w**yrf*ntfil*r*
ft*tlgcrn*iinwflsnlylifs*ks*ififrfntrynysipklwsfissllyxxsrly
v


Frame C:
---FTDDKKGFSNCFENSTSIEIWSNTLEIMKQLRIDQHENEDQSGESSITFEISELFIL
DLIGKAIGPLETIELVCKFSEMFEKSKIETKLLSDWIKFGKWSLYDRPKLSYDILSLLDS
HLWLKKPLTISPQFLTMIGPELDPTLPNNPFKEFFNKLGTSSHDSGDNIDFKIPSFFEDN
SRRHWGVETELSTGSCPICTLSLAENPESSFLGSTPATIIVFPNCGHSYHHCCXKXQGCM
L

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS203 (CHS203Q) /CSM/CH/CHS2-A/CHS203Q.Seq.d/                       1409   0.0
CHQ609 (CHQ609Q) /CSM/CH/CHQ6-A/CHQ609Q.Seq.d/                       1378   0.0
AHF529 (AHF529Q) /CSM/AH/AHF5-B/AHF529Q.Seq.d/                       1370   0.0
CHS417 (CHS417Q) /CSM/CH/CHS4-A/CHS417Q.Seq.d/                       1362   0.0
SHC156 (SHC156Q) /CSM/SH/SHC1-C/SHC156Q.Seq.d/                       1356   0.0
AHI664 (AHI664Q) /CSM/AH/AHI6-C/AHI664Q.Seq.d/                       1356   0.0
SHK834 (SHK834Q) /CSM/SH/SHK8-B/SHK834Q.Seq.d/                       1346   0.0
CHN655 (CHN655Q) /CSM/CH/CHN6-C/CHN655Q.Seq.d/                       1300   0.0
CHG701 (CHG701Q) /CSM/CH/CHG7-A/CHG701Q.Seq.d/                       1294   0.0
VFE776 (VFE776Q) /CSM/VF/VFE7-D/VFE776Q.Seq.d/                       1181   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1394   0.0    1
AL953893|AL953893.17 Zebrafish DNA sequence from clone DKEY-60B12.    40   0.15   8
DT747137|DT747137.1 EST1180986 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1W653, mRNA sequence.    48   0.25   1
DT747136|DT747136.1 EST1180985 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1W653, mRNA sequence.    48   0.25   1
DT731465|DT731465.1 EST1165315 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1T789, mRNA sequence.    48   0.25   1
DR924529|DR924529.1 EST1116068 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1N260, mRNA sequence.    48   0.25   1
DR924528|DR924528.1 EST1116067 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1N260, mRNA sequence.    48   0.25   1
AC124354|AC124354.4 Mus musculus BAC clone RP24-481K12 from 12, complete sequence.    48   0.25   1
CF795636|CF795636.1 891809 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence.    36   0.71   2
CO986656|CO986656.1 UMC-pd10en3-005-c10 Endometrium gilt D10 of estrous cycle pd10en Sus scrofa cDNA 3', mRNA sequence.    36   0.95   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001324_457(CP001324|pid:none) Micromonas sp. RCC299 chromosome...    45   0.003
CP000589_44(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...    41   0.041
BT052911_1(BT052911|pid:none) Medicago truncatula clone MTYFL_FM...    40   0.071
AY057581_1(AY057581|pid:none) Arabidopsis thaliana putative 2,3-...    40   0.071
AY045627_1(AY045627|pid:none) Arabidopsis thaliana At1g09780/F21...    40   0.071
AY426251_1(AY426251|pid:none) Tetrahymena thermophila strain B p...    40   0.092
U55854_11(U55854|pid:none) Caenorhabditis elegans cosmid C04G6, ...    39   0.12
U55854_12(U55854|pid:none) Caenorhabditis elegans cosmid C04G6, ...    39   0.12
T29599(T29599)hypothetical protein C04G6.1 - Caenorhabditis eleg...    39   0.12
CP000589_371(CP000589|pid:none) Ostreococcus lucimarinus CCE9901...    39   0.20

 psg: 0.68  gvh: 0.32  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CHS203 is nuc

>CHS203Z.Seq
NNNNNNNNNNATTTTCACTGATGATAAAAAAGGTTTTTCAAATTGTTTTGAAAATAGTAC
ATCAATTGAAATTTGGTCAAATACTTTAGAAATTATGAAACAATTAAGAATTGATCAACA
TGAAAATGAAGATCAATCTGGTGAATCAAGTATTACATTTGAAATTTCAGAATTATTTAT
ATTGGATTTAATTGGTAAAGCAATTGGTCCATTGGAAACTATTGAATTGGTTTGCAAATT
TTCAGAAATGTTTGAAAAGAGTAAAATTGAAACTAAATTATTATCAGATTGGATTAAATT
TGGAAAATGGTCGTTGTATGATAGACCAAAGTTATCATATGATATCTTATCACTTTTGGA
TAGTCATTTATGGTTAAAGAAACCCTTGACCATTTCACCTCAATTCTTAACTATGATTGG
TCCTGAATTGGACCCAACTTTACCAAATAATCCATTCAAAGAATTCTTTAATAAACTTGG
AACTTCAAGTCATGATAGTGGTGATAATATCGATTTTAAAATACCTTCATTCTTTGAAGA
TAATTCACGTAGACATTGGGGTGTAGAAACTGAATTATCAACTGGTTCTTGTCCAATTTG
TACCTTATCTTTAGCTGAAAATCCTGAATCTTCATTTTTAGGTTCAACACCCGCTACAAT
TATAGTATTCCCAAATTGTGGTCATTCATATCATCATTGTTGTATNAAGNATCAAGGTTG
TATGTTA