CHS196 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHS196
Library	CH (Link to library)
Clone ID	CHS196 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16411-1\|Contig-U16470-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHS1-D/CHS196Q.Seq.d/
Representative seq. ID	CHS196P (Link to Original site)
Representative DNA sequence	>CHS196 (CHS196Q) /CSM/CH/CHS1-D/CHS196Q.Seq.d/ CATAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG CAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATXXXXXXXXXXAATTGGCAAAAGC ATTGGCATTGGAATTGTTTGATGATGAATCTCATATGGTTAGAATTGATATGAGTGAATA TATGGANCAACATTCGGTTTCTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGA TCAAGGTGGTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGA TGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGG TCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGAC CTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAA CTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCC AGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCT TCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATAT GTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAAT CTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAA ACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCA TCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAAC CAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAA
sequence update	2002.10.25
Translated Amino Acid sequence	*iiikiciykrnknflffvnilfsvnksynfstyiyiyiflkNKIKMSFNPEEFTDKT NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA TKEQVIQAVKE--- ---LAKALALELFDDESHMVRIDMSEYMXQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRP YSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQA NKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEK RLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGV VVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kkikn
Translated Amino Acid sequence (All Frames)	Frame A: hnk*lkfayikeikifyfltyyflinhiifqhtyiyiyfnkikkchliqknllik qiqfcelknwqeknqmynhqyiwllhymmkiiqnlylkklvemyqklmlvlkdyp nnlfkiqyhlkflqihyfykfdqqhvikrimviliqltiywdywmieiyyqywemlv qpknklykqlkr--- ---nwqkhwhwnclmmnliwlelivniwxnirflvlvlhqvmvmikvvnlkpseed htvyclmklkklinkfgmfsykywmkvvlpmvkvepisqmllslpqivvntslvnk qtkkvvttlyhklvkikslmklenisvqsfivsmilsllhvkktfivlllfndpsk rdkikiclrfqtmliqlsmlhmiqslvvdhnvtlkrilslnlvnsslvvnkkikv llsmkkiiistlilinnnnnvqllqpknkkllnkkkki Frame B: iinnnnlhikkkffifckhiifckiiffnihiyiyifkiknknvisrriyn kynfvknsrigkrkikctistntfgcyiikrfskiyikswwrctkncwfkiisq ttcskssttnfskfiiftsfkisstsskewfsfsspfnigiig*ryiisigrcwc nqrtsytssrd--- ---igksigigiv**isygnyeiygxtfgfsfnwcstrlcrlsrwsinsrqkkt iqcsiv*skssstslecsltsigrssyrwsrnrrflkccyhydlkfrsihpwts kqrrwqlfitslrshsktfpsrvfkssrynclysierkpsyyyssikirrk eirrskyvfkdfkrcfrfnyqccisnlwwtietlhkeychtthpwwikrksrc ccqkrsssqlyyrfktttttssfsnqktknyikknkk Frame C: *iiikiciykrnknflffvnilfsvnksynfstyiyiyiflkNKIKMSFNPEEFTDKT NTILLRTQELAREKSNVQLAPIHLAVTLLNDEDNLAKSIFEKAGGDVPKIDAGFKRLLAK QPVQNPVPPEISPNSLFLQVLRSAARHQKNNGDSHLAVDHLILGLLDDRDILSVLGDAGA TKEQVIQAVKE--- ---LAKALALELFDDESHMVRIDMSEYMXQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRP YSVVLFDEVEKAHQQVWNVLLQVLDEGRLTDGQGRTVDFSNVVIIMTSNLGSQYILGEQA NKEGGNNSLSQACKDKVIDEVRKHFRPEFLNRLDDIIVFTPLSKENLHSIITLQLRSVEK RLEDQNMSLKISNDALDSIINAAYDPIFGGRPLKRYIEKNIVTELSKLILGGKLKENQGV VVNEKDHHLNFDIIDLKQQQQRPASPTKKQKTIK*kkikn
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHS196 (CHS196Q) /CSM/CH/CHS1-D/CHS196Q.Seq.d/ 2381 0.0 SHJ825 (SHJ825Q) /CSM/SH/SHJ8-B/SHJ825Q.Seq.d/ 1562 0.0 CHR423 (CHR423Q) /CSM/CH/CHR4-A/CHR423Q.Seq.d/ 1560 0.0 CHH470 (CHH470Q) /CSM/CH/CHH4-C/CHH470Q.Seq.d/ 1560 0.0 SFE610 (SFE610Q) /CSM/SF/SFE6-A/SFE610Q.Seq.d/ 1552 0.0 CHR708 (CHR708Q) /CSM/CH/CHR7-A/CHR708Q.Seq.d/ 1548 0.0 CHI477 (CHI477Q) /CSM/CH/CHI4-D/CHI477Q.Seq.d/ 1544 0.0 SHL672 (SHL672Q) /CSM/SH/SHL6-C/SHL672Q.Seq.d/ 1540 0.0 SHG564 (SHG564Q) /CSM/SH/SHG5-C/SHG564Q.Seq.d/ 1540 0.0 CHL860 (CHL860Q) /CSM/CH/CHL8-C/CHL860Q.Seq.d/ 1540 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N CP000029\|CP000029.1 Staphylococcus epidermidis RP62A, complete genome. 123 2e-32 3 AE016746\|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome. 123 2e-32 3 AX145048\|AX145048.1 Sequence 3770 from Patent WO0134809. 123 3e-32 3 AR485684\|AR485684.1 Sequence 3770 from patent US 6703492. 123 3e-32 3 AF269730\|AF269730.1 Staphylococcus epidermidis strain SR1 clone step.1020d12 genomic sequence. 123 3e-32 3 AX143829\|AX143829.1 Sequence 2551 from Patent WO0134809. 123 3e-32 3 AR484857\|AR484857.1 Sequence 2551 from patent US 6703492. 123 3e-32 3 AB239684\|AB239684.1 Tetragenococcus halophilus gene for ClpB, complete cds. 100 9e-23 2 AZ551673\|AZ551673.1 ENTGF14TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 68 3e-19 3 BX842644\|BX842644.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 3/4. 62 8e-18 3
dna update	2005.11.27
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AY764155_1(AY764155\|pid:none) Vitis vinifera heat shock protein ... 288 2e-76 AJ970534_1(AJ970534\|pid:none) Triticum turgidum subsp. durum par... 286 9e-76 AJ970533_1(AJ970533\|pid:none) Triticum turgidum subsp. durum par... 286 2e-75 (Q6F2Y7) RecName: Full=Heat shock protein 101; &AC130611_3(AC13... 286 2e-75 AF097363_1(AF097363\|pid:none) Triticum aestivum heat shock prote... 285 2e-75 AJ970535_1(AJ970535\|pid:none) Triticum turgidum subsp. durum par... 285 3e-75 L35272_1(L35272\|pid:none) Glycine max heat shock protein (SB100)... 285 3e-75 AF083327_1(AF083327\|pid:none) Zea mays 101 kDa heat shock protei... 284 6e-75 BT066296_1(BT066296\|pid:none) Zea mays full-length cDNA clone ZM... 284 6e-75 AF174433_1(AF174433\|pid:none) Triticum aestivum heat shock prote... 284 6e-75
protein update	2009. 4.13
PSORT	psg: 0.63 gvh: 0.36 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.08 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 36.0 %: nuclear 4.0 %: cytoskeletal 4.0 %: mitochondrial 4.0 %: peroxisomal >> prediction for CHS196 is cyt
5' end seq. ID	CHS196F
5' end seq.	>CHS196F.Seq CATAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG CAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGATNNNNNNNNNN
Length of 5' end seq.	587
3' end seq. ID	CHS196Z
3' end seq.	>CHS196Z.Seq NNNNNNNNNNAATTGGCAAAAGCATTGGCATTGGAATTGTTTGATGATGAATCTCATATG GTTAGAATTGATATGAGTGAATATATGGANCAACATTCGGTTTCTCGTTTAATTGGTGCT CCACCAGGTTATGTAGGTTATGATCAAGGTGGTCAATTAACTGAAGCCGTCAGAAGAAGA CCATACAGTGTAGTATTGTTTGATGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTT CTCTTACAAGTATTGGATGAAGGTCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTC TCAAATGTTGTTATCATTATGACCTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAA GCAAACAAAGAAGGTGGTAACAACTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGAT GAAGTTAGAAAACATTTCCGTCCAGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTT ACTCCATTGAGTAAAGAAAACCTTCATAGTATTATTACTCTTCAATTAAGATCCGTCGAA AAGAGATTAGAAGATCAAAATATGTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATT ATCAATGCTGCATATGATCCAATCTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAG AATATTGTCACTGAACTTAGTAAACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGT GTTGTTGTCAATGAAAAAGATCATCATCTCAACTTTGATATTATAGATTTAAAACAACAA CAACAACGTCCAGCTTCTCCAACCAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAA AATAA
Length of 3' end seq.	845
Connected seq. ID	CHS196P
Connected seq.	>CHS196P.Seq CATAATAAATAATAATTAAAATTTGCATATATAAAAGAAATAAAAATTTTTTATTTTTTG TAAACATATTATTTTCTGTAAATAAATCATATAATTTTTCAACATACATATATATATATA TATTTTTAAAATAAAATAAAATAAAAATGTCATTTAATCCAGAAGAATTTACTGATAAAA CAAATACAATTTTGTTAAGAACTCAAGAATTGGCAAGAGAAAAATCAAATGTACAATTAG CACCAATACATTTGGCTGTTACATTATTAAATGATGAAGATAATTTAGCAAAATCTATAT TTGAAAAAGCTGGTGGAGATGTACCAAAAATTGATGCTGGTTTTAAAAGATTATTAGCCA AACAACCTGTTCAAAATCCAGTACCACCTGAAATTTCTCCAAATTCATTATTTTTACAAG TTTTAAGATCAGCAGCACGTCATCAAAAGAATAATGGTGATTCTCATTTAGCAGTTGACC ATTTAATATTGGGATTATTGGATGATAGAGATATATTATCAGTATTGGGAGATGCTGGTG CAACCAAAGAACAAGTTATACAAGCAGTTAAAGAGAT----------AATTGGCAAAAGC ATTGGCATTGGAATTGTTTGATGATGAATCTCATATGGTTAGAATTGATATGAGTGAATA TATGGANCAACATTCGGTTTCTCGTTTAATTGGTGCTCCACCAGGTTATGTAGGTTATGA TCAAGGTGGTCAATTAACTGAAGCCGTCAGAAGAAGACCATACAGTGTAGTATTGTTTGA TGAAGTTGAAAAAGCTCATCAACAAGTTTGGAATGTTCTCTTACAAGTATTGGATGAAGG TCGTCTTACCGATGGTCAAGGTAGAACCGTAGATTTCTCAAATGTTGTTATCATTATGAC CTCAAATTTAGGTAGTCAATACATCCTTGGTGAACAAGCAAACAAAGAAGGTGGTAACAA CTCTTTATCACAAGCTTGTAAAGATAAAGTCATTGATGAAGTTAGAAAACATTTCCGTCC AGAGTTTTTAAATCGTCTCGATGATATAATTGTCTTTACTCCATTGAGTAAAGAAAACCT TCATAGTATTATTACTCTTCAATTAAGATCCGTCGAAAAGAGATTAGAAGATCAAAATAT GTCTTTAAAGATTTCAAACGATGCTTTAGATTCAATTATCAATGCTGCATATGATCCAAT CTTTGGTGGTAGACCATTGAAACGTTACATTGAAAAGAATATTGTCACTGAACTTAGTAA ACTCATCCTTGGTGGTAAATTAAAAGAAAATCAAGGTGTTGTTGTCAATGAAAAAGATCA TCATCTCAACTTTGATATTATAGATTTAAAACAACAACAACAACGTCCAGCTTCTCCAAC CAAAAAACAAAAAACTATTAAATAAAAAAAAATAAAAAATAA
Length of connected seq.	1412
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas