CHS195
Library CH
(Link to library)
Clone ID CHS195
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16423-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS195 (CHS195Q) /CSM/CH/CHS1-D/CHS195Q.Seq.d/
XXXXXXXXXXTTGAAACTAAACGTTCTTGTGATACTCTTACCTACTTTTTAAATCAAAGA
AATTTCCCAACTACCTGTATTCATGGTGATTTAACTCAACCAGAAAGAGAAAATGCACTT
CAATCTTTCCGTTCTTTTGCAACTCCATTCTTAGTAGCAACTGATATTGCATCAAGAGGT
CTCCACATCGGTAATGTTAATTTGGTTATCAATTTCGACTTGCCTACCGACATACATATC
TACGTTCATCGTATTGGTAGAACCGGAAGAGCAGGAAAAAAAGGTTTAGCAATTTCCTTC
TTCAATGAAAAGAATAAACCAGTTGGTGCTGAACTTTTGAAATTAATGAAAGCTTCAAAT
CAAGATATTCCAGATTGGTTTGAAAAGATGGTACACAATCTCCGTATGTCTAAAGGTCCA
TCAAACTCAAAATCAAATAGTCCATTCAACAAATCTTACAATAGTCATCACAATAGAGAT
GATAACCGTGGTGGTTATGGTGGTGGTGGTGGTGGTAATGGAGGTTACAGTAACAACCGT
AATGATAGAAGAGAAGATAAATCAGATTACTCAATGCATCACCCATACTTTAGCAACAAT
GGTGGTTCATATAATTAAACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATC
CATTTTAATTC
sequence update 2002. 9.10
Translated Amino Acid sequence
---ETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGL
HIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQ
DIPDWFEKMVHNLRMSKGPSNSKSNSPFNKSYNSHHNRDDNRGGYGGGGGGNGGYSNNRN
DRREDKSDYSMHHPYFSNNGGSYN*tftschsfnkk**ihfn


Translated Amino Acid sequence (All Frames)
Frame A:
---*n*tfl*ysyllfkskkfpnylysw*fnstrkrkctsifpffcnsilssn*ycikrs
phr*c*fgyqfrlayrhtylrssyw*nrksrkkrfsnfllq*ke*tswc*tfeinesfks
rysrlv*kdgtqspyv*rsiklkik*siqqilq*ssq*r**pwwlwwwwww*wrlq*qp*
**krr*irllnaspil*qqwwfi*lnihlmsfv**kiinpf*f


Frame B:
---ETKRSCDTLTYFLNQRNFPTTCIHGDLTQPERENALQSFRSFATPFLVATDIASRGL
HIGNVNLVINFDLPTDIHIYVHRIGRTGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQ
DIPDWFEKMVHNLRMSKGPSNSKSNSPFNKSYNSHHNRDDNRGGYGGGGGGNGGYSNNRN
DRREDKSDYSMHHPYFSNNGGSYN*tftschsfnkk**ihfn


Frame C:
---klnvlvillptf*ikeisqlpvfmvi*lnqkekmhfnlsvllqlhs**qlilhqevs
tsvmliwlsistclptyistfivlvepeeqekkv*qfpssmkrinqlvlnf*n**klqik
ifqiglkrwytisvclkvhqtqnqivhstnltivitiemitvvvmvvvvvvmevtvttvm
ieekinqitqcithtlatmvvhiikhsphvirliknnksili


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ404 (VHQ404Q) /CSM/VH/VHQ4-A/VHQ404Q.Seq.d/ 904 0.0
VHP734 (VHP734Q) /CSM/VH/VHP7-B/VHP734Q.Seq.d/ 904 0.0
VHP681 (VHP681Q) /CSM/VH/VHP6-D/VHP681Q.Seq.d/ 904 0.0
VHP588 (VHP588Q) /CSM/VH/VHP5-D/VHP588Q.Seq.d/ 904 0.0
VHP118 (VHP118Q) /CSM/VH/VHP1-A/VHP118Q.Seq.d/ 904 0.0
VHO596 (VHO596Q) /CSM/VH/VHO5-D/VHO596Q.Seq.d/ 904 0.0
VHM740 (VHM740Q) /CSM/VH/VHM7-B/VHM740Q.Seq.d/ 904 0.0
VHL839 (VHL839Q) /CSM/VH/VHL8-B/VHL839Q.Seq.d/ 904 0.0
VHL166 (VHL166Q) /CSM/VH/VHL1-C/VHL166Q.Seq.d/ 904 0.0
VHK893 (VHK893Q) /CSM/VH/VHK8-D/VHK893Q.Seq.d/ 904 0.0

own update 2002.10. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CD169096|CD169096.1 MM1-0024G-M078-E11-U.B MM1-0024 Schistosoma mansoni cDNA cloneMM1-0024G-M078-E11.B, mRNA sequence. 36 0.021 3
CD169707|CD169707.1 MM1-0024T-M086-B01-U.B MM1-0024 Schistosoma mansoni cDNA clone MM1-0024T-M086-B01.B, mRNA sequence. 36 0.022 3
CD169077|CD169077.1 MM1-0024G-M078-D02-U.B MM1-0024 Schistosoma mansoni cDNA clone MM1-0024G-M078-D02.B, mRNA sequence. 36 0.023 3
CD169818|CD169818.1 MM1-0024T-M087-D03-U.B MM1-0024 Schistosoma mansoni cDNA clone MM1-0024T-M087-D03.B, mRNA sequence. 36 0.024 3
CD168683|CD168683.1 MM1-0023U-M091-D09-U.B MM1-0023 Schistosoma mansoni cDNA clone MM1-0023U-M091-D09.B, mRNA sequence. 36 0.025 3
CD169118|CD169118.1 MM1-0024G-M078-H01-U.B MM1-0024 Schistosoma mansoni cDNA clone MM1-0024G-M078-H01.B, mRNA sequence. 36 0.025 3
CD169088|CD169088.1 MM1-0024G-M078-E01-U.B MM1-0024 Schistosoma mansoni cDNA clone MM1-0024G-M078-E01.B, mRNA sequence. 36 0.026 3
CD169723|CD169723.1 MM1-0024T-M086-C08-U.B MM1-0024 Schistosoma mansoni cDNA clone MM1-0024T-M086-C08.B, mRNA sequence. 36 0.026 3
CD168977|CD168977.1 MM1-0024G-M077-B07-U.B MM1-0024 Schistosoma mansoni cDNA clone MM1-0024G-M077-B07.B, mRNA sequence. 36 0.027 3
CD129961|CD129961.1 MF1-0031U-L048-G04-U.B MF1-0031 Schistosoma mansoni cDNA clone MF1-0031U-L048-G04.B, mRNA sequence. 36 0.027 3
dna update 2005.11.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QS3) RecName: Full=Probable ATP-dependent RNA helicase ddx3;... 308 7e-83
(Q6Z4K6) RecName: Full=DEAD-box ATP-dependent RNA helicase 52B; ... 155 1e-36
(Q75HJ0) RecName: Full=DEAD-box ATP-dependent RNA helicase 37; ... 150 2e-35
EU953399_1(EU953399|pid:none) Zea mays clone 1406878 unknown mRNA. 150 3e-35
(Q2R1M8) RecName: Full=DEAD-box ATP-dependent RNA helicase 52C; ... 148 1e-34
AY062446_1(AY062446|pid:none) Arabidopsis thaliana ATP-dependent... 148 2e-34
AM048814_1(AM048814|pid:none) Platynereis dumerilii mRNA for PL1... 147 2e-34
AM444101_1(AM444101|pid:none) Vitis vinifera contig VV78X103110.... 147 3e-34
AP008212_1481(AP008212|pid:none) Oryza sativa (japonica cultivar... 146 5e-34
CP001333_316(CP001333|pid:none) Micromonas sp. RCC299 chromosome... 146 5e-34
protein update 2009. 5.20
PSORT

psg: 0.78 gvh: 0.40 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
20.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CHS195 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS195Z
3' end seq.
>CHS195Z.Seq
NNNNNNNNNNTTGAAACTAAACGTTCTTGTGATACTCTTACCTACTTTTTAAATCAAAGA
AATTTCCCAACTACCTGTATTCATGGTGATTTAACTCAACCAGAAAGAGAAAATGCACTT
CAATCTTTCCGTTCTTTTGCAACTCCATTCTTAGTAGCAACTGATATTGCATCAAGAGGT
CTCCACATCGGTAATGTTAATTTGGTTATCAATTTCGACTTGCCTACCGACATACATATC
TACGTTCATCGTATTGGTAGAACCGGAAGAGCAGGAAAAAAAGGTTTAGCAATTTCCTTC
TTCAATGAAAAGAATAAACCAGTTGGTGCTGAACTTTTGAAATTAATGAAAGCTTCAAAT
CAAGATATTCCAGATTGGTTTGAAAAGATGGTACACAATCTCCGTATGTCTAAAGGTCCA
TCAAACTCAAAATCAAATAGTCCATTCAACAAATCTTACAATAGTCATCACAATAGAGAT
GATAACCGTGGTGGTTATGGTGGTGGTGGTGGTGGTAATGGAGGTTACAGTAACAACCGT
AATGATAGAAGAGAAGATAAATCAGATTACTCAATGCATCACCCATACTTTAGCAACAAT
GGTGGTTCATATAATTAAACATTCACCTCATGTCATTCGTTTAATAAAAAATAATAAATC
CATTTTAATTC
Length of 3' end seq. 671
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -