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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS192
Library CH
(Link to library)
Clone ID CHS192
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID CHS192P
(Link to Original site)
Representative DNA sequence 
>CHS192 (CHS192Q) /CSM/CH/CHS1-D/CHS192Q.Seq.d/
TTTAAATATTCCTTCAAGTAAATGGGTTTATGATACAACTTATGTTATTACATTAACTGC
AACCTCTGGTAAAGAGACAAACTACGATAATGTTACAGTTATCATTTCAAAGAAACCAAT
CACTGCAGTAATTGATGGAGCCGATAAAGAATTCCCATTAAATACTTTAATAACTTTAGA
TGCTTCAAAATCTTTTGATCCAACAACTACTTCAACAGTTTCCAAAGAACTTGATGATTC
AACCTCTACACAACAACAATCATTTACTTATGCATGGAGATGTATCAATAAAAGTGGCAA
AGATTGCGGATTAAATTTAGAATCTGAACCAATTATTACATTTAACTCTTCAAGATTGAA
TGTTGGTGTTTTCCATTTCTCTGTTGATGTTACCCCAAATGGTGATGCCACAAGAAAGTG
GTTCTGCTAGTGCCACTGTTACCATTGTAAATACTCCAGTAATTGATGTTATTATCTCAC
CATTACCAACAACCATTGATCCAACTCAAAAATTGGTACTCTATACAGTAGTTAGTGGTA
ATGATGCATCTTCATCAAATTTAACCTATGAATGGAATATGCTCGAAGGTACTCTTGAAC
TTCCATTAAAACAAGCCTATAGTACCCCAATGAATAGTAGAAATTTGGTATTAAAGGCTG
GTGCACTCGGTXXXXXXXXXXTCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGAT
GGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGT
TTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATT
GGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCA
AAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATC
ACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACC
ATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAAT
GGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAA
TTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACC
CATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATT
GAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTT
GTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAAC
AAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAG
AAACAAGCAAAAGNAAAAGNAAAGAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
*iflqvngfmiqlmllh*lqplvkrqttimlqlsfqrnqslq*lmepiknsh*il**l*m
lqnlliqqllqqfpknlmiqplhnnnhllmhgdvsikvakiad*i*nlnqllhltlqd*M
LVFSISLLMLPQMVMPQESGSASATVTIVNTPVIDVIISPLPTTIDPTQKLVLYTVVSGN
DASSSNLTYEWNMLEGTLELPLKQAYSTPMNSRNLVLKAGALG---

---SSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKK
DDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPK
TVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVD
GNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNK
SKKTKEQINKEKEDKKKQAKXKXKK
Translated Amino Acid sequence (All Frames) 
Frame A:
fkysfk*mgl*ynlcyyincnlw*rdklr*cysyhfketnhcsn*wsr*ripikyfnnfr
cfkif*snnyfnsfqrt**fnlytttiiylcmemyq*kwqrlrikfri*tnyyi*lfkie
cwcfpflc*cypkw*chkkvvllvpllpl*ilq*lmllshhyqqpliqlknwysiq*lvv
mmhlhqi*pmngicskvllnfh*nkpivpq*iveiwy*rlvhs---

---SSDILVVSNSLADGILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKK
DDEGQSLDGEKLAFTPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPK
TVSLELFNGGSQLSINGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVD
GNIQCKCNHLTEFGLIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKNK
SKKTKEQINKEKEDKKKQAKXKXKK

Frame B:
lnipsskwvydttyvitltatsgketnydnvtviiskkpitavidgadkefplntlitld
asksfdptttstvskelddststqqqsftyawrcinksgkdcglnlesepiitfnssrln
vgvfhfsvdvtpngdatrkwfc*chcyhckyssn*cyyltitnnh*snskigtlyss*w*
*cifikfnl*meyarrys*tsiktsl*ypne**kfgikgwctr---

---lqtf*wypihwqmvffkelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrlvskr
mmkvnllmvknllslqnsvfhqvfyqrin*nkplkslvn*lqfhqifisiinlikpfsqk
lfhlnfsmvalnyqsmalkiklsliwenihhqkiknlnvvggapikkng*qmvvqpik*m
vifnvnvtilqslv*lnlqnplktfgslldq*lvvlylqlqwlvllyw*rerktktkrtn
qrkpknkstkkkktkrnkqkxkxr

Frame C:
*iflqvngfmiqlmllh*lqplvkrqttimlqlsfqrnqslq*lmepiknsh*il**l*m
lqnlliqqllqqfpknlmiqplhnnnhllmhgdvsikvakiad*i*nlnqllhltlqd*M
LVFSISLLMLPQMVMPQESGSASATVTIVNTPVIDVIISPLPTTIDPTQKLVLYTVVSGN
DASSSNLTYEWNMLEGTLELPLKQAYSTPMNSRNLVLKAGALG---

---frhfsgiqfigrwysskncnw*rtiysck**rfldyni*nstygik*ewsidwfqkg
**rsis*w*ktcfhskiqysikcfike*iktnl*nhw*tnyssikysfqs*i*snhfpkn
cft*tfqwwlsiinqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfnp*srw
*ysm*m*psyrvwfn*ickilskhldhywtsswwccicscngwyccigkekekqkqkeqi
kenqrtnqqrkrrqketskxkxke
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS192 (CHS192Q) /CSM/CH/CHS1-D/CHS192Q.Seq.d/                       2633   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1342   0.0
SHK593 (SHK593Q) /CSM/SH/SHK5-D/SHK593Q.Seq.d/                       1342   0.0
SHJ824 (SHJ824Q) /CSM/SH/SHJ8-A/SHJ824Q.Seq.d/                       1342   0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/                       1342   0.0
SHD253 (SHD253Q) /CSM/SH/SHD2-C/SHD253Q.Seq.d/                       1342   0.0
SHB414 (SHB414Q) /CSM/SH/SHB4-A/SHB414Q.Seq.d/                       1342   0.0
SFG748 (SFG748Q) /CSM/SF/SFG7-B/SFG748Q.Seq.d/                       1342   0.0
CHS207 (CHS207Q) /CSM/CH/CHS2-A/CHS207Q.Seq.d/                       1342   0.0
CHR819 (CHR819Q) /CSM/CH/CHR8-A/CHR819Q.Seq.d/                       1342   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC122311|AC122311.6 Mus musculus BAC clone RP23-298B23 from chromosome 6, complete sequence.    42   0.32   4
CK580072|CK580072.1 IST_WI5_26979 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.52   1
CK580064|CK580064.1 IST_WI5_26968 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.52   1
CK579939|CK579939.1 IST_WI5_26789 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.52   1
CK579682|CK579682.1 IST_WI5_25671 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.52   1
CK577635|CK577635.1 IST_WI5_17633 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.52   1
AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces.    48   0.52   1
CK577615|CK577615.1 IST_WI5_17612 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.52   1
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.52   1
AF200706|AF200706.1 Caenorhabditis elegans UNC-84A mRNA, complete cds.    48   0.52   1
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   3e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   3e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   3e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   3e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   7e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.004
AF166382_1(AF166382|pid:none) Mus musculus serpentine receptor (...    45   0.005
AY181246_1(AY181246|pid:none) Homo sapiens G protein-coupled rec...    45   0.008
(Q96K78) RecName: Full=Probable G-protein coupled receptor 128; ...    45   0.008
protein update 2009. 4.13
PSORT 

 psg: 0.96  gvh: 0.68  alm: 0.22  top: 0.40  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.17  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for CHS192 is exc
5' end seq. ID CHS192F
5' end seq. 
>CHS192F.Seq
TTTAAATATTCCTTCAAGTAAATGGGTTTATGATACAACTTATGTTATTACATTAACTGC
AACCTCTGGTAAAGAGACAAACTACGATAATGTTACAGTTATCATTTCAAAGAAACCAAT
CACTGCAGTAATTGATGGAGCCGATAAAGAATTCCCATTAAATACTTTAATAACTTTAGA
TGCTTCAAAATCTTTTGATCCAACAACTACTTCAACAGTTTCCAAAGAACTTGATGATTC
AACCTCTACACAACAACAATCATTTACTTATGCATGGAGATGTATCAATAAAAGTGGCAA
AGATTGCGGATTAAATTTAGAATCTGAACCAATTATTACATTTAACTCTTCAAGATTGAA
TGTTGGTGTTTTCCATTTCTCTGTTGATGTTACCCCAAATGGTGATGCCACAAGAAAGTG
GTTCTGCTAGTGCCACTGTTACCATTGTAAATACTCCAGTAATTGATGTTATTATCTCAC
CATTACCAACAACCATTGATCCAACTCAAAAATTGGTACTCTATACAGTAGTTAGTGGTA
ATGATGCATCTTCATCAAATTTAACCTATGAATGGAATATGCTCGAAGGTACTCTTGAAC
TTCCATTAAAACAAGCCTATAGTACCCCAATGAATAGTAGAAATTTGGTATTAAAGGCTG
GTGCACTCGGTNNNNNNNNNN
Length of 5' end seq. 681
3' end seq. ID CHS192Z
3' end seq. 
>CHS192Z.Seq
NNNNNNNNNNTCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGATGGTATTCTTCA
AAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTAC
AACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAA
GGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTAT
TCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACT
AATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAA
AACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGA
TCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGG
TTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGA
TGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAA
ATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGC
TGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGAACAA
ATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAGAAACAAGCAAA
AGNAAAAGNAAAGAAG
Length of 3' end seq. 796
Connected seq. ID CHS192P
Connected seq. 
>CHS192P.Seq
TTTAAATATTCCTTCAAGTAAATGGGTTTATGATACAACTTATGTTATTACATTAACTGC
AACCTCTGGTAAAGAGACAAACTACGATAATGTTACAGTTATCATTTCAAAGAAACCAAT
CACTGCAGTAATTGATGGAGCCGATAAAGAATTCCCATTAAATACTTTAATAACTTTAGA
TGCTTCAAAATCTTTTGATCCAACAACTACTTCAACAGTTTCCAAAGAACTTGATGATTC
AACCTCTACACAACAACAATCATTTACTTATGCATGGAGATGTATCAATAAAAGTGGCAA
AGATTGCGGATTAAATTTAGAATCTGAACCAATTATTACATTTAACTCTTCAAGATTGAA
TGTTGGTGTTTTCCATTTCTCTGTTGATGTTACCCCAAATGGTGATGCCACAAGAAAGTG
GTTCTGCTAGTGCCACTGTTACCATTGTAAATACTCCAGTAATTGATGTTATTATCTCAC
CATTACCAACAACCATTGATCCAACTCAAAAATTGGTACTCTATACAGTAGTTAGTGGTA
ATGATGCATCTTCATCAAATTTAACCTATGAATGGAATATGCTCGAAGGTACTCTTGAAC
TTCCATTAAAACAAGCCTATAGTACCCCAATGAATAGTAGAAATTTGGTATTAAAGGCTG
GTGCACTCGGT----------TCTTCAGACATTTTAGTGGTATCCAATTCATTGGCAGAT
GGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGTGATAAAGGT
TTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGTCAATCGATT
GGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCTTTCACTCCA
AAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACCTCTGAAATC
ACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCTGATCAAACC
ATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTATCAATCAAT
GGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAAGATAAAGAA
TTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGTTGTTCAACC
CATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTTGGTTTAATT
GAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTTGGTGGTGTT
GTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAAAACAAAAAC
AAAAAGAACAAATCAAAGAAAACCAAAGAACAAATCAACAAAGAAAAAGAAGACAAAAAG
AAACAAGCAAAAGNAAAAGNAAAGAAG
Length of connected seq. 1457
Full length Seq ID -
Full length Seq. -
Length of full length seq. -