>CHS191 (CHS191Q) /CSM/CH/CHS1-D/CHS191Q.Seq.d/
AAAATTAAATCAAATCAAATCAATAATAATGAATAATAAACAAGTTTTTGTAAAAGGTTT
AACACCAGATACAACCAATGAAGATCTTGAAAATTTCTTTTCAGATATTGGTCCATTAAA
AAGATGTTTTATAGTTACAAAACAAAATGAAAAGGGTGAAAAAGTTTGTAGTGGTATTGC
ATACGTTTGGTATGCATTAGCTGAACATGCTGAAAAAGCAATTAAAGAAAAAAATAATAA
ACAATTAAAAAGTAAAATTATTCATGTTTCTATTGCAAAAGAGAAATTATCAAAGAAAGA
TTCAAAAGATTCAAAAGATTCAAAAGATTCAAAAGATTCAAAAGATACTACAACTGCAAC
TACTACTACTACTACCACTACACCAGAAGAACCAATAGTTAAACAATATAATACAAAGAA
AGAATTTTCAGTAATTGCAAATAATTTAGTTGCAGAGAAAGTATTTGTTTCAAATTTCCT
TAGTTTAAAGAAAGATACTATTAAAGCAGTTTATTCAATTCCACATTCAAATGATGCAAT
TAGAATCGTTTGTGAAAATCAAGAAAATTTAAAACAAGTAGTTACAAAATTAACTAAAAA
TAAACAAAATAATGGTAAATXXXXXXXXXXATAAAAATCAAAAGGATAGTAAAAAAGAGA
GTAAAAAGAATTCATTATCCGTTTCATCATTACTTCAAGGTGGTGTCATGTTGGATGGTA
GATGTTTAGTAGTATGCTATGCAGTTGATCATCAACAAGCAACAGCATACAAAGAGAAGA
AAGTTGAAAATGTCGATAAAAAGAACAAACATTTATTNAACATTGGTAAAATCATTCAAA
ACTNTGCCGAAGGTAAAGAATTGGATGAAAAAGATTGGGCATTAAGAAACCAAGCTGATA
AAGAGAATCAAACAAAATTAAAAGTTAATCCAAATTATTACGTTTNTCCAACCCGTTTAT
GTATTAGAAATNTCCCATTACATGTAACCGATACAATTTTAAAGAATGCCNCAATGAAAA
TATTAAAAACTGCCAATATTAAAGACAAGGTTGTATTTGCCAAAGTAGCCTGTGACAATG
AAANAGTCAATGNTCAAGGTAAAGCAAAATCCAAGGGTTTNGCATTCATCGAATGTTCAA
CTCATCAAGGTGCTCTTGAAATTTTTCATAAAACCAATAACAATTCAAAGATCTTCTTTT
CNCCTTCAAATTTAAAATNTAAAGGTCAACGTTTATTCNCNCNATTTGCAGTTGAAGATG
CTCGTGCTGTTAAAAAAAAAAATAATCTAAAAATAAATAAATATTAAAA

KLNQIKSIIMNNKQVFVKGLTPDTTNEDLENFFSDIGPLKRCFIVTKQNEKGEKVCSGIA
YVWYALAEHAEKAIKEKNNKQLKSKIIHVSIAKEKLSKKDSKDSKDSKDSKDSKDTTTAT
TTTTTTTPEEPIVKQYNTKKEFSVIANNLVAEKVFVSNFLSLKKDTIKAVYSIPHSNDAI
RIVCENQENLKQVVTKLTKNKQNNGK---

---KNQKDSKKESKKNSLSVSSLLQGGVMLDGRCLVVCYAVDHQQATAYKEKKVENVDKK
NKHLXNIGKIIQNXAEGKELDEKDWALRNQADKENQTKLKVNPNYYVXPTRLCIRNXPLH
VTDTILKNAXMKILKTANIKDKVVFAKVACDNEXVNXQGKAKSKGXAFIECSTHQGALEI
FHKTNNNSKIFFSPSNLKXKGQRLFXXFAVEDARAVKKKNNLKINKY*

Frame A:
kiksnqinnne**tsfckrfntrynq*rs*kflfrywsikkmfysyktk*kg*ksl*wyc
irlvcis*tc*ksn*rkk**tikk*nyscfyckreiikerfkrfkrfkrfkrfkryyncn
yyyyyhytrrtns*ti*ykerifsnck*fscresicfkfp*fkeryy*sslfnstfk*cn
*nrl*ksrkfktssykin*k*tk*w*---

---ikikrivkkrvkrihypfhhyfkvvscwmvdv**yamqliinkqqhtkrrklkmsik
rtniyxtlvksfktxpkvknwmkkigh*etklikrikqn*kliqiitfxqpvyvlexshy
m*piqf*rmpq*ky*klpilktrlylpk*pvtmkxsmxkvkqnprvxhssnvqlikvllk
ffikpitiqrssfxlqi*nxkvnvysxxlqlkmlvllkkkii*k*inik

Frame B:
KLNQIKSIIMNNKQVFVKGLTPDTTNEDLENFFSDIGPLKRCFIVTKQNEKGEKVCSGIA
YVWYALAEHAEKAIKEKNNKQLKSKIIHVSIAKEKLSKKDSKDSKDSKDSKDSKDTTTAT
TTTTTTTPEEPIVKQYNTKKEFSVIANNLVAEKVFVSNFLSLKKDTIKAVYSIPHSNDAI
RIVCENQENLKQVVTKLTKNKQNNGK---

---*kskg**kre*kefiirfiitsrwchvgw*mfssmlcs*sstsnsiqrees*kcr*k
eqtfixhw*nhsklcrr*rig*krlgikkps**resnkiks*skllrxsnpfmy*kxpit
cnrynfkecxnenikncqy*rqgcicqssl*q*xsqxsr*skiqgfxihrmfnssrcs*n
fs*nq*qfkdllfxfkfkx*rstfixxics*rcscc*kkk*sknk*ilk

Frame C:
n*iksnq***iinkfl*kv*hqiqpmkilkisfqilvh*kdvl*lqnkmkrvkkfvvvlh
tfgmh*lnmlkkqlkkkiinn*kvklfmfllqkrnyqrkiqkiqkiqkiqkiqkilqlql
llllplhqknq*lnniiqrknfq*lqii*lqrkylfqislv*rkillkqfiqfhiqmmql
esfvkikki*nk*lqn*lkinkimvn---

---KNQKDSKKESKKNSLSVSSLLQGGVMLDGRCLVVCYAVDHQQATAYKEKKVENVDKK
NKHLXNIGKIIQNXAEGKELDEKDWALRNQADKENQTKLKVNPNYYVXPTRLCIRNXPLH
VTDTILKNAXMKILKTANIKDKVVFAKVACDNEXVNXQGKAKSKGXAFIECSTHQGALEI
FHKTNNNSKIFFSPSNLKXKGQRLFXXFAVEDARAVKKKNNLKINKY*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS191 (CHS191Q) /CSM/CH/CHS1-D/CHS191Q.Seq.d/                       1130   0.0
VHK578 (VHK578Q) /CSM/VH/VHK5-D/VHK578Q.Seq.d/                       1088   0.0
VHG657 (VHG657Q) /CSM/VH/VHG6-C/VHG657Q.Seq.d/                        979   0.0
VHJ348 (VHJ348Q) /CSM/VH/VHJ3-B/VHJ348Q.Seq.d/                        815   0.0
SSH676 (SSH676Q) /CSM/SS/SSH6-D/SSH676Q.Seq.d/                         44   0.005
AHC832 (AHC832Q) /CSM/AH/AHC8-B/AHC832Q.Seq.d/                         44   0.005
SSM765 (SSM765Q) /CSM/SS/SSM7-C/SSM765Q.Seq.d/                         42   0.021
SSL640 (SSL640Q) /CSM/SS/SSL6-B/SSL640Q.Seq.d/                         42   0.021
SLH520 (SLH520Q) /CSM/SL/SLH5-A/SLH520Q.Seq.d/                         42   0.021
SLC833 (SLC833Q) /CSM/SL/SLC8-B/SLC833Q.Seq.d/                         42   0.021

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX649522|BX649522.15 Zebrafish DNA sequence from clone DKEY-40I22 in linkage group 2.    36   2e-04  11
AE015939|AE015939.1 Clostridium tetani E88, section 4 of 10 of the complete genome.    40   0.012  11
AX251264|AX251264.1 Sequence 232 from Patent WO0168912.            34   0.027  8
BD452785|BD452785.1 Diagnosis of Diseases Associated with tumor suppressor genes and oncogenes.    34   0.027  8
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    34   0.074  12
AC163345|AC163345.1 Mus musculus chromosome 12 clone RP23-445J15, WORKING DRAFT SEQUENCE, 8 unordered pieces.    36   0.10   6
AL390037|AL390037.16 Human DNA sequence from clone RP5-851M4 on chromosome 20 Contains  ESTs, STSs and GSSs.    50   0.12   1
BZ043174|BZ043174.1 lkg96c11.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44   0.12   2
AY398556|AY398556.1 Scindapsus hederaceus tRNA-Leu gene (trnL), partial sequence; trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast.    32   0.13   3
BX159984|BX159984.1 Danio rerio genomic clone DKEY-121B6, genomic survey sequence.    36   0.20   3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK001239_1(AK001239|pid:none) Homo sapiens cDNA FLJ10377 fis, cl...    67   2e-09
(Q9NW13) RecName: Full=RNA-binding protein 28; AltName: Full=RNA...    67   2e-09
Z83119_4(Z83119|pid:none) Caenorhabditis elegans Cosmid R05H10, ...    66   3e-09
AK013047_1(AK013047|pid:none) Mus musculus 10, 11 days embryo wh...    65   7e-09
AK012408_1(AK012408|pid:none) Mus musculus 11 days embryo whole ...    65   7e-09
AK156773_1(AK156773|pid:none) Mus musculus activated spleen cDNA...    65   7e-09
(O74400) RecName: Full=Uncharacterized RNA-binding protein C4F6....    62   3e-08
BC167360_1(BC167360|pid:none) Xenopus tropicalis RNA binding mot...    62   3e-08
BC018373_1(BC018373|pid:none) Mus musculus RNA binding motif pro...    62   4e-08
BX901876_3(BX901876|pid:none) Zebrafish DNA sequence from clone ...    61   7e-08

 psg: 0.63  gvh: 0.26  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHS191 is cyt

>CHS191F.Seq
AAAATTAAATCAAATCAAATCAATAATAATGAATAATAAACAAGTTTTTGTAAAAGGTTT
AACACCAGATACAACCAATGAAGATCTTGAAAATTTCTTTTCAGATATTGGTCCATTAAA
AAGATGTTTTATAGTTACAAAACAAAATGAAAAGGGTGAAAAAGTTTGTAGTGGTATTGC
ATACGTTTGGTATGCATTAGCTGAACATGCTGAAAAAGCAATTAAAGAAAAAAATAATAA
ACAATTAAAAAGTAAAATTATTCATGTTTCTATTGCAAAAGAGAAATTATCAAAGAAAGA
TTCAAAAGATTCAAAAGATTCAAAAGATTCAAAAGATTCAAAAGATACTACAACTGCAAC
TACTACTACTACTACCACTACACCAGAAGAACCAATAGTTAAACAATATAATACAAAGAA
AGAATTTTCAGTAATTGCAAATAATTTAGTTGCAGAGAAAGTATTTGTTTCAAATTTCCT
TAGTTTAAAGAAAGATACTATTAAAGCAGTTTATTCAATTCCACATTCAAATGATGCAAT
TAGAATCGTTTGTGAAAATCAAGAAAATTTAAAACAAGTAGTTACAAAATTAACTAAAAA
TAAACAAAATAATGGTAAATNNNNNNNNNN

>CHS191Z.Seq
NNNNNNNNNNATAAAAATCAAAAGGATAGTAAAAAAGAGAGTAAAAAGAATTCATTATCC
GTTTCATCATTACTTCAAGGTGGTGTCATGTTGGATGGTAGATGTTTAGTAGTATGCTAT
GCAGTTGATCATCAACAAGCAACAGCATACAAAGAGAAGAAAGTTGAAAATGTCGATAAA
AAGAACAAACATTTATTNAACATTGGTAAAATCATTCAAAACTNTGCCGAAGGTAAAGAA
TTGGATGAAAAAGATTGGGCATTAAGAAACCAAGCTGATAAAGAGAATCAAACAAAATTA
AAAGTTAATCCAAATTATTACGTTTNTCCAACCCGTTTATGTATTAGAAATNTCCCATTA
CATGTAACCGATACAATTTTAAAGAATGCCNCAATGAAAATATTAAAAACTGCCAATATT
AAAGACAAGGTTGTATTTGCCAAAGTAGCCTGTGACAATGAAANAGTCAATGNTCAAGGT
AAAGCAAAATCCAAGGGTTTNGCATTCATCGAATGTTCAACTCATCAAGGTGCTCTTGAA
ATTTTTCATAAAACCAATAACAATTCAAAGATCTTCTTTTCNCCTTCAAATTTAAAATNT
AAAGGTCAACGTTTATTCNCNCNATTTGCAGTTGAAGATGCTCGTGCTGTTAAAAAAAAA
AATAATCTAAAAATAAATAAATATTAAAA

>CHS191P.Seq
AAAATTAAATCAAATCAAATCAATAATAATGAATAATAAACAAGTTTTTGTAAAAGGTTT
AACACCAGATACAACCAATGAAGATCTTGAAAATTTCTTTTCAGATATTGGTCCATTAAA
AAGATGTTTTATAGTTACAAAACAAAATGAAAAGGGTGAAAAAGTTTGTAGTGGTATTGC
ATACGTTTGGTATGCATTAGCTGAACATGCTGAAAAAGCAATTAAAGAAAAAAATAATAA
ACAATTAAAAAGTAAAATTATTCATGTTTCTATTGCAAAAGAGAAATTATCAAAGAAAGA
TTCAAAAGATTCAAAAGATTCAAAAGATTCAAAAGATTCAAAAGATACTACAACTGCAAC
TACTACTACTACTACCACTACACCAGAAGAACCAATAGTTAAACAATATAATACAAAGAA
AGAATTTTCAGTAATTGCAAATAATTTAGTTGCAGAGAAAGTATTTGTTTCAAATTTCCT
TAGTTTAAAGAAAGATACTATTAAAGCAGTTTATTCAATTCCACATTCAAATGATGCAAT
TAGAATCGTTTGTGAAAATCAAGAAAATTTAAAACAAGTAGTTACAAAATTAACTAAAAA
TAAACAAAATAATGGTAAAT----------ATAAAAATCAAAAGGATAGTAAAAAAGAGA
GTAAAAAGAATTCATTATCCGTTTCATCATTACTTCAAGGTGGTGTCATGTTGGATGGTA
GATGTTTAGTAGTATGCTATGCAGTTGATCATCAACAAGCAACAGCATACAAAGAGAAGA
AAGTTGAAAATGTCGATAAAAAGAACAAACATTTATTNAACATTGGTAAAATCATTCAAA
ACTNTGCCGAAGGTAAAGAATTGGATGAAAAAGATTGGGCATTAAGAAACCAAGCTGATA
AAGAGAATCAAACAAAATTAAAAGTTAATCCAAATTATTACGTTTNTCCAACCCGTTTAT
GTATTAGAAATNTCCCATTACATGTAACCGATACAATTTTAAAGAATGCCNCAATGAAAA
TATTAAAAACTGCCAATATTAAAGACAAGGTTGTATTTGCCAAAGTAGCCTGTGACAATG
AAANAGTCAATGNTCAAGGTAAAGCAAAATCCAAGGGTTTNGCATTCATCGAATGTTCAA
CTCATCAAGGTGCTCTTGAAATTTTTCATAAAACCAATAACAATTCAAAGATCTTCTTTT
CNCCTTCAAATTTAAAATNTAAAGGTCAACGTTTATTCNCNCNATTTGCAGTTGAAGATG
CTCGTGCTGTTAAAAAAAAAAATAATCTAAAAATAAATAAATATTAAAA