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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS190
Library CH
(Link to library)
Clone ID CHS190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHS190P
(Link to Original site)
Representative DNA sequence 
>CHS190 (CHS190Q) /CSM/CH/CHS1-D/CHS190Q.Seq.d/
CAATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTATTATTAATATCAAG
TATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAACGTATTTTGGC
ATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACC
AGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATA
TCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTAC
AACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGAC
ATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGC
AGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGG
TGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGA
GCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCC
ACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAAT
TTTTGATGGAXXXXXXXXXXAGTGGAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTG
ATCAAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATC
ATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATA
TTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATA
ATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTC
GTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATG
ATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTA
TTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAAC
AATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTG
ATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTCCCA
TTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAA
CTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATTATTTTAA
GGTTGTTCATTGGTATATTCCAAAAAAATAAAAAATAAAAAAATATAAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
n*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLDSNKNALYDEGEP
GFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYYFETYEKT
LACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRISVDLGYVE
QTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFDG---

---SGGKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVT
TGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSL
PQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSS
NYYCVIPVAFFQAGSPITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIILRLFI
GIFQKNKK*knin
Translated Amino Acid sequence (All Frames) 
Frame A:
qliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlfrfk*kciv**r*t
riwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyqskrlll*nl*kd
iglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliytys*n*c*fglc*
ansttnsttysttysttntstiyw*crrwfiiyryqw*wnf*w---

---SGGKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDIIVT
TGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYDSSL
PQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVDFSS
NYYCVIPVAFFQAGSPITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGVIILRLFI
GIFQKNKK*knin

Frame B:
n*YININKMKILYSLLLISSIILNTVLNISSQVYDQRILALKGKCYLDSNKNALYDEGEP
GFGNVEISLGNATDYKGNKYPIRYSSADGTFIYDGLTQRTTYEFTFTNPKDYYFETYEKT
LACPPGVPCIRPTVSADNLAADLLVANTFAYNIPLIKQVGVSSGSSILTVRISVDLGYVE
QTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFDG---

---vevnvvvllvpeliknhslvldmvqvmvisliiikqvfmtipmllvqlkvvvilllq
lvsitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmillf
hnivlvefgli*mvmvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlklisvq
iiiv*fllhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlgllf*gcsl
vyskkiknkki*i

Frame C:
inililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*iqikmhcmmkvnq
dlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpiqkiitlkpmkrh
wlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*lnklvfhqahlylqlelvliwvmls
klnhqlnhllnhllnhqhlhhllvvpslvyylpismvmeflm---

---wr*mw*scwcrs*skithws*iwsr*w*fl**s*nrss*lyqcfwcn*rws*yycyn
wfrll*si*rfnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*ffss
tiscw*sla*ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*fqfk
lllcnsccilpswfshynekc*snsskyk**cflinc**clchffyff*cwgyyfkvvhw
yipkk*kikkyk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS190 (CHS190Q) /CSM/CH/CHS1-D/CHS190Q.Seq.d/                       1520   0.0
SHA522 (SHA522Q) /CSM/SH/SHA5-A/SHA522Q.Seq.d/                       1503   0.0
SHL147 (SHL147Q) /CSM/SH/SHL1-B/SHL147Q.Seq.d/                       1421   0.0
AHK467 (AHK467Q) /CSM/AH/AHK4-C/AHK467Q.Seq.d/                       1421   0.0
SHA212 (SHA212Q) /CSM/SH/SHA2-A/SHA212Q.Seq.d/                       1419   0.0
CHQ566 (CHQ566Q) /CSM/CH/CHQ5-C/CHQ566Q.Seq.d/                       1419   0.0
AHJ446 (AHJ446Q) /CSM/AH/AHJ4-B/AHJ446Q.Seq.d/                       1419   0.0
AHB147 (AHB147Q) /CSM/AH/AHB1-B/AHB147Q.Seq.d/                       1415   0.0
SHG711 (SHG711Q) /CSM/SH/SHG7-A/SHG711Q.Seq.d/                       1413   0.0
SHA580 (SHA580Q) /CSM/SH/SHA5-D/SHA580Q.Seq.d/                       1413   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA cloneUI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.51   1
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence.    36   1.0    2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    36   1.0    2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   1.0    2
CV912682|CV912682.1 PF007G3 sporangia, cleaving Phytophthora infestans cDNA, mRNA sequence.    46   2.0    1
BB047825|BB047825.1 Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430562L22, 3' end partial sequence.    46   2.0    1
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    46   2.0    1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   2.0    1
BH078802|BH078802.1 RPCI-24-244F17.TV RPCI-24 Mus musculus genomic clone RPCI-24-244F17 , DNA sequence.    46   2.0    1
AC148334|AC148334.3 Mus musculus BAC clone RP23-213L20 from chromosome 13, complete sequence.    46   2.0    1
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    78   7e-13
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    65   4e-09
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    59   3e-07
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    59   4e-07
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   3e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   3e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   3e-05
protein update 2009. 4.13
PSORT 

 psg: 0.95  gvh: 0.59  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.56  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: Golgi
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CHS190 is mit
5' end seq. ID CHS190F
5' end seq. 
>CHS190F.Seq
CAATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTATTATTAATATCAAG
TATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAACGTATTTTGGC
ATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACC
AGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATA
TCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTAC
AACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGAC
ATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGC
AGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGG
TGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGA
GCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCC
ACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAAT
TTTTGATGGANNNNNNNNNN
Length of 5' end seq. 680
3' end seq. ID CHS190Z
3' end seq. 
>CHS190Z.Seq
NNNNNNNNNNAGTGGAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATC
ACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGG
TCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTAC
AACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTC
TGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATC
TCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCT
TCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGC
TGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCC
AACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTC
AAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTCCCATTACAATGAG
AAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAA
TGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATTATTTTAAGGTTGTTCAT
TGGTATATTCCAAAAAAATAAAAAATAAAAAAATATAAATAA
Length of 3' end seq. 762
Connected seq. ID CHS190P
Connected seq. 
>CHS190P.Seq
CAATTAATATATTAATATTAATAAAATGAAAATATTATATTCATTATTATTAATATCAAG
TATAATTTTAAATACTGTATTAAATATTTCATCACAAGTATATGATCAACGTATTTTGGC
ATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAATGCATTGTATGATGAAGGTGAACC
AGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGCAACTGATTATAAGGGAAATAAATA
TCCAATACGTTATTCATCTGCTGATGGTACATTTATATATGATGGATTAACTCAACGTAC
AACTTATGAATTTACATTTACCAATCCAAAAGATTATTACTTTGAAACCTATGAAAAGAC
ATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCCAACGGTTTCAGCTGATAATTTGGC
AGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAACATTCCATTGATTAAACAAGTTGG
TGTTTCATCAGGCTCATCTATACTTACAGTTAGAATTAGTGTTGATTTGGGTTATGTTGA
GCAAACTCAACCACCAACTCAACCACCTACTCAACCACCTACTCAACCACCAACACCTCC
ACCATTTACTGGTAGTGCCGTCGCTGGTTTATTATTTACCGATATCAATGGTAATGGAAT
TTTTGATGGA----------AGTGGAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTG
ATCAAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATC
ATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATA
TTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATA
ATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTC
GTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATG
ATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTA
TTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAAC
AATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTG
ATTTCAGTTCAAATTATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTCCCA
TTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAA
CTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGGGTTATTATTTTAA
GGTTGTTCATTGGTATATTCCAAAAAAATAAAAAATAAAAAAATATAAATAA
Length of connected seq. 1422
Full length Seq ID -
Full length Seq. -
Length of full length seq. -