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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS189
Library CH
(Link to library)
Clone ID CHS189
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHS189P
(Link to Original site)
Representative DNA sequence 
>CHS189 (CHS189Q) /CSM/CH/CHS1-D/CHS189Q.Seq.d/
ATCAAATTATTTTTAACAAATTATATTATTATACTTTAATCAAATGACATCAGGCGGAAT
CGTACAACCAGGCCAAAATCTCTCACAACGTCCAATAAACGGCCAATATGGCTGGGGACC
AGCAGCAGGAAGTGCCGCAAATCCACGTGGCGATCTCCGTGGTTACACTTACAATATTAG
ATAGTTTTCGCTGTCTATTTCTGAATATTCAGAAATCTTTGTTTAATGCCAAAAATAGTA
GATATCTATTATATTTTCTCATTTTATAAATCTGATAAGATCTGTCTTAAATAAAAAAAA
TCAAATTTTTTTATAAATTAAAAAAAAAAXXXXXXXXXXATCAAATTATTTTTAACAAAT
TATATTATTATACTTTAATCAAATGACATCAGGCGGAATCGTACAACCAGGCCAAAATCT
CTCACAACGTCCANATAAACGGCCAATATGGCTGGGGACCAGCAGCAGGAAGTGCCGCAA
ATCCACGTGGCGATCTCCGTGGTTACACTTACAATATTAGATAGTTTCGCTGTCTATTTC
TGAATATTCAGAAATCTTTGTTTAATGCCAAAAATAGTAGATATCTATTATATTTTCTCA
TTTTATAAATCNNATAAGATCTGTCTTAAATAAAAAAAATCAAATTTTTTTA
sequence update 2002.10.25
Translated Amino Acid sequence 
qiifnklyyytlik*hqaesynqakishnvq*tanmagdqqqevpqihvaisvvtltild
sfrclflniqkslfnaknsryllyflil*i**dls*IKKIKFFYKLKKK---

---QIIFNKLYYYTLIK*hqaesynqakishnvxingqygwgpaagsaanprgdlrgyty
nir*frclflniqkslfnaknsryllyflil*ix*dls*ikkikff
Translated Amino Acid sequence (All Frames) 
Frame A:
iklfltnyiiil*sndirrnrttrpkslttsnkrpiwlgtssrkcrkstwrspwlhlqy*
ivfavyf*ifrnlclmpkivdiyyifsfyksdkiclk*kksnffin*kk---

---iklfltnyiiil*sndirrnrttrpkslttsx*tanmagdqqqevpqihvaisvvtl
tildsfavyf*ifrnlclmpkivdiyyifsfyksxkiclk*kksnff

Frame B:
snyf*qiillyfnqmtsggivqpgqnlsqrpingqygwgpaagsaanprgdlrgytynir
*fslsiseyseifv*cqk**isiifshfinlirsvlnkknqifl*ikkk---

---snyf*qiillyfnqmtsggivqpgqnlsqrpxkrpiwlgtssrkcrkstwrspwlhl
qy*ivslsiseyseifv*cqk**isiifshfinxirsvlnkknqifl

Frame C:
qiifnklyyytlik*hqaesynqakishnvq*tanmagdqqqevpqihvaisvvtltild
sfrclflniqkslfnaknsryllyflil*i**dls*IKKIKFFYKLKKK---

---QIIFNKLYYYTLIK*hqaesynqakishnvxingqygwgpaagsaanprgdlrgyty
nir*frclflniqkslfnaknsryllyflil*ix*dls*ikkikff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS189 (CHS189Q) /CSM/CH/CHS1-D/CHS189Q.Seq.d/                        571   e-162
SHL401 (SHL401Q) /CSM/SH/SHL4-A/SHL401Q.Seq.d/                        569   e-161
VFE450 (VFE450Q) /CSM/VF/VFE4-C/VFE450Q.Seq.d/                        553   e-156
SHJ470 (SHJ470Q) /CSM/SH/SHJ4-C/SHJ470Q.Seq.d/                        553   e-156
SHI646 (SHI646Q) /CSM/SH/SHI6-B/SHI646Q.Seq.d/                        553   e-156
SHA757 (SHA757Q) /CSM/SH/SHA7-C/SHA757Q.Seq.d/                        553   e-156
AHP705 (AHP705Q) /CSM/AH/AHP7-A/AHP705Q.Seq.d/                        553   e-156
VSA180 (VSA180Q) /CSM/VS/VSA1-D/VSA180Q.Seq.d/                        547   e-155
CHM620 (CHM620Q) /CSM/CH/CHM6-A/CHM620Q.Seq.d/                        547   e-155
AHL135 (AHL135Q) /CSM/AH/AHL1-B/AHL135Q.Seq.d/                        545   e-154
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116922|AC116922.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.   379   e-140  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   379   e-127  2
AF225898|AF225898.1 Homo sapiens BAC clone 13d21, complete sequence.    44   0.005  4
AC100851|AC100851.2 Homo sapiens chromosome 8 clone RP11-466A22 map 8, LOW-PASS SEQUENCE SAMPLING.    36   0.041  4
AC140217|AC140217.3 Mus musculus BAC clone RP23-279O5 from 8, complete sequence.    50   0.058  1
AC121604|AC121604.3 Mus musculus BAC clone RP23-312E2 from chromosome 8, complete sequence.    50   0.058  1
AP003461|AP003461.2 Homo sapiens genomic DNA, chromosome 11q clone:RP11-37O16.    42   0.071  3
AC005877|AC005877.3 citb_19_o_18, complete sequence.               44   0.079  3
AC022888|AC022888.3 Homo sapiens chromosome 11 clone RP11-484L12 map 11, WORKING DRAFT SEQUENCE, 4 unordered pieces.    42   0.18   5
CB931147|CB931147.1 ri54a08.y1 Meloidogyne chitwoodi J2 pDNR LIB Meloidogyne chitwoodi cDNA 5', mRNA sequence.    42   0.24   2
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_51(AC116957|pid:none) Dictyostelium discoideum chromoso...   101   2e-20
protein update 2008.11. 9
PSORT 

 psg: 0.49  gvh: -0.04  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHS189 is nuc
5' end seq. ID CHS189F
5' end seq. 
>CHS189F.Seq
ATCAAATTATTTTTAACAAATTATATTATTATACTTTAATCAAATGACATCAGGCGGAAT
CGTACAACCAGGCCAAAATCTCTCACAACGTCCAATAAACGGCCAATATGGCTGGGGACC
AGCAGCAGGAAGTGCCGCAAATCCACGTGGCGATCTCCGTGGTTACACTTACAATATTAG
ATAGTTTTCGCTGTCTATTTCTGAATATTCAGAAATCTTTGTTTAATGCCAAAAATAGTA
GATATCTATTATATTTTCTCATTTTATAAATCTGATAAGATCTGTCTTAAATAAAAAAAA
TCAAATTTTTTTATAAATTAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 339
3' end seq. ID CHS189Z
3' end seq. 
>CHS189Z.Seq
NNNNNNNNNNATCAAATTATTTTTAACAAATTATATTATTATACTTTAATCAAATGACAT
CAGGCGGAATCGTACAACCAGGCCAAAATCTCTCACAACGTCCANATAAACGGCCAATAT
GGCTGGGGACCAGCAGCAGGAAGTGCCGCAAATCCACGTGGCGATCTCCGTGGTTACACT
TACAATATTAGATAGTTTCGCTGTCTATTTCTGAATATTCAGAAATCTTTGTTTAATGCC
AAAAATAGTAGATATCTATTATATTTTCTCATTTTATAAATCNNATAAGATCTGTCTTAA
ATAAAAAAAATCAAATTTTTTTA
Length of 3' end seq. 323
Connected seq. ID CHS189P
Connected seq. 
>CHS189P.Seq
ATCAAATTATTTTTAACAAATTATATTATTATACTTTAATCAAATGACATCAGGCGGAAT
CGTACAACCAGGCCAAAATCTCTCACAACGTCCAATAAACGGCCAATATGGCTGGGGACC
AGCAGCAGGAAGTGCCGCAAATCCACGTGGCGATCTCCGTGGTTACACTTACAATATTAG
ATAGTTTTCGCTGTCTATTTCTGAATATTCAGAAATCTTTGTTTAATGCCAAAAATAGTA
GATATCTATTATATTTTCTCATTTTATAAATCTGATAAGATCTGTCTTAAATAAAAAAAA
TCAAATTTTTTTATAAATTAAAAAAAAAA----------ATCAAATTATTTTTAACAAAT
TATATTATTATACTTTAATCAAATGACATCAGGCGGAATCGTACAACCAGGCCAAAATCT
CTCACAACGTCCANATAAACGGCCAATATGGCTGGGGACCAGCAGCAGGAAGTGCCGCAA
ATCCACGTGGCGATCTCCGTGGTTACACTTACAATATTAGATAGTTTCGCTGTCTATTTC
TGAATATTCAGAAATCTTTGTTTAATGCCAAAAATAGTAGATATCTATTATATTTTCTCA
TTTTATAAATCNNATAAGATCTGTCTTAAATAAAAAAAATCAAATTTTTTTA
Length of connected seq. 642
Full length Seq ID -
Full length Seq. -
Length of full length seq. -