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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS187
Library CH
(Link to library)
Clone ID CHS187
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11857-1
Original site URL
Representative seq. ID CHS187P
(Link to Original site)
Representative DNA sequence 
>CHS187 (CHS187Q) /CSM/CH/CHS1-D/CHS187Q.Seq.d/
AAATTCCAAATTATTTTAACACACTCACACACACACTGGAGAATTAAATAAAACGATAGA
TAAAAAAATAAAAAAAAAGAGAGAGAGGAAAGAAAGAGAGAGTGAGAGAGAGAGAAGGTC
AAATAAATAATAGTAATAATAAAAAATAAAAAACGAATAAATACAATATCATAAAGTTAT
GATTGTAATTTTCATTTTCATTTTAATAGCCGTTGGTTTACTCTCGACCAAAATCCTTCA
CAGATATATTTCAATAAAGAAAATACCATGGTACGTTTATATATCAGTTTGGATAGGTTG
GTTCATGTGTTTTAGTATTGTCATTTTGGTACCAATCGATATTTTATGTACAGATTATAG
ACAATGTAAACATATTAGTGATAGTCAATCTGAAAAATTAAATGAAATCATTACAAATAT
CAGTAATGGTACCAATAGTGGTAGTAATAATAATAATAATAATAATAATGAAATTATAAA
TAAATATGATTCATGTGAAGAACCATGGGCATATATTTCGAATGATAAATTAGAATATAT
TTATCAAACATTTTATTTTGGAACATTATTATTAACATGGTTAGTTTATCCATTGATGGG
GTTCGTTTGTATTGGCCXXXXXXXXXXCATTTTCAGTTGTAATGGGTACAATGAATGTTG
CACCATTTTTAGGAACTTACTTTTTACATATATTTCCCATTGTTAATTGTTATTGTTTGT
CTATCGACTTTGTTTAATGTTTACTCTAGAATTATGAATTGTTTGAATATTAGTAAATTT
AGATTCGATGTAGATTTCTCACATGAACAAATTGATGAAGGTAAATTCTTAATAGATAGT
GAAAGAAGAAAATGGACTCAAAATAATATAAAACCTTTAAGTTCAAAATCACCACCACCA
TCTTTAGATTCAACTTCAAATAATCCAAAACAAATCTTTAAATCTGGTTCAACTACAATT
TCAAAGCAATCACCACCAAATCTTAATGTTAGTGGTGGTAATATTAATAATAACAACACT
AACAATGGTAATACAAGTAGTGCTAGAAGTTTCATCGATTCATTCTTGAAAAAGAGTAGT
AATAATAATAACAATAACAATAATAACAATAATCCATATGAACAAACATTATTATTCGAC
GAAAGTAATGATTTTGATGATGATGATGATATTGAATCTGGTGGTGCTGGTAGACCCACT
TATAATGCACATTTATCAAGTTCATTCAATGGTGGTGCAAATAGTACCTCCATTAGTGGT
TATCCTCAAATCAATAAAATGTTTGGTGGTGCAAATAGATATTCTCAATTACCAAAAAAA
TAAATTTTAAAAACAATAAGTATATAAATAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATCAATAAATAAATAAATAAGTAAATAAATNATA
sequence update 2002.10.25
Translated Amino Acid sequence 
nsklf*hththtgelnktidkkikkkrerkeresererrsnk*****kikne*IQYHKVM
IVIFIFILIAVGLLSTKILHRYISIKKIPWYVYISVWIGWFMCFSIVILVPIDILCTDYR
QCKHISDSQSEKLNEIITNISNGTNSGSNNNNNNNNEIINKYDSCEEPWAYISNDKLEYI
YQTFYFGTLLLTWLVYPLMGFVCIG---

---FSVVMGTMNVAPFLGTYFLHIFPIVNCYCLSIDFV*cll*nyelfey**i*ircrfl
t*tn**r*ilnr**kkkmdsk*yktfkfkitttifrfnfk*sktnl*iwfnynfkaittk
s*c*ww*y***qh*qw*yk*c*kfhrfileke*****q*q**q*si*tniiirrk**f**
***y*iwwcw*thl*ctfikfiqwwck*ylh*wlssnq*nvwwck*ifsitkkinfknnk
yinnk*ink*ink*inq*ink*vnkx
Translated Amino Acid sequence (All Frames) 
Frame A:
kfqiilthshthwrik*ndr*knkkkereerkre*erekvk*iiviiknkkrintis*sy
dcnfhfhfnsrwftldqnpsqiyfnkentmvrlyisldrlvhvf*ychfgtnryfmyrl*
tm*ty***si*kik*nhykyq*wyq*w**********nyk*i*fm*rtmgiyfe**iriy
lsnilfwniiinmvslsidgvrlyw---

---hfql*wvq*mlhhf*eltfyiyfpllivivclstlfnvysrimnclniskfrfdvdf
sheqidegkflidserrkwtqnnikplsskspppsldstsnnpkqifksgsttiskqspp
nlnvsggninnnntnngntssarsfidsflkkssnnnnnnnnnnnpyeqtllfdesndfd
ddddiesggagrptynahlsssfngganstsisgypqinkmfgganrysqlpkk*ilkti
si*iink*ink*ink*ink*ink*inx

Frame B:
nsklf*hththtgelnktidkkikkkrerkeresererrsnk*****kikne*IQYHKVM
IVIFIFILIAVGLLSTKILHRYISIKKIPWYVYISVWIGWFMCFSIVILVPIDILCTDYR
QCKHISDSQSEKLNEIITNISNGTNSGSNNNNNNNNEIINKYDSCEEPWAYISNDKLEYI
YQTFYFGTLLLTWLVYPLMGFVCIG---

---ifscngynecctifrnllftyishc*lllfvyrlclmftlel*iv*ilvnldsm*is
hmnklmkvns**ivkeenglkii*nl*vqnhhhhl*iqlqiiqnkslnlvqlqfqsnhhq
ilmlvvviliittltmviqvvlevssihs*krvviiititiitiihmnkhyystkvmilm
mmmilnlvvlvdplimhiyqvhsmvvqivpplvvilksikclvvqidilnyqknkf*kq*
vyk**ink*ink*inksink*isk*xi

Frame C:
ipnyfntlthtlen*ikr*ikk*kkrergkkervreregqinnsnnkk*ktnkyniikl*
l*fsfsf**plvysrpksftdifq*rkyhgtfiyqfg*vgscvlvlsfwyqsifyvqiid
nvnilvivnlkn*mkslqisvmvpivvviiiiiiimkl*inmihvknhghifrmin*nif
ikhfilehyy*hg*fih*wgsfvla---

---FSVVMGTMNVAPFLGTYFLHIFPIVNCYCLSIDFV*cll*nyelfey**i*ircrfl
t*tn**r*ilnr**kkkmdsk*yktfkfkitttifrfnfk*sktnl*iwfnynfkaittk
s*c*ww*y***qh*qw*yk*c*kfhrfileke*****q*q**q*si*tniiirrk**f**
***y*iwwcw*thl*ctfikfiqwwck*ylh*wlssnq*nvwwck*ifsitkkinfknnk
yinnk*ink*ink*inq*ink*vnkx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS187 (CHS187Q) /CSM/CH/CHS1-D/CHS187Q.Seq.d/                       1116   0.0
CHQ541 (CHQ541Q) /CSM/CH/CHQ5-B/CHQ541Q.Seq.d/                        872   0.0
CHM818 (CHM818Q) /CSM/CH/CHM8-A/CHM818Q.Seq.d/                        866   0.0
CHR558 (CHR558Q) /CSM/CH/CHR5-C/CHR558Q.Seq.d/                        864   0.0
CHS278 (CHS278Q) /CSM/CH/CHS2-D/CHS278Q.Seq.d/                        779   0.0
CHQ635 (CHQ635Q) /CSM/CH/CHQ6-B/CHQ635Q.Seq.d/                        773   0.0
CHP731 (CHP731Q) /CSM/CH/CHP7-B/CHP731Q.Seq.d/                        559   e-158
SLJ502 (SLJ502Q) /CSM/SL/SLJ5-A/SLJ502Q.Seq.d/                         48   4e-04
SLI127 (SLI127Q) /CSM/SL/SLI1-B/SLI127Q.Seq.d/                         48   4e-04
SLB378 (SLB378Q) /CSM/SL/SLB3-D/SLB378Q.Seq.d/                         44   0.006
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    40   0.003  12
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    36   0.003  12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    48   0.004  13
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    44   0.007  11
DR940822|DR940822.1 EST1132361 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1Q150, mRNA sequence.    38   0.010  3
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    42   0.017  15
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    34   0.022  12
CO982312|CO982312.1 GM89014A1E05.r1 Gm-r1089 Glycine max cDNA clone Gm-r1089-5193 3, mRNA sequence.    52   0.032  1
CD406036|CD406036.1 Gm_ck30193 Soybean induced by Salicylic Acid Glycine max cDNA 3', mRNA sequence.    52   0.032  1
BM892201|BM892201.1 sam57e09.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-3665 5' similar to TR:O49349 O49349 TRANSCRIPTION FACTOR IIA LARGE SUBUNIT. ;, mRNA sequence.    52   0.032  1
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Q92) RecName: Full=LMBR1 domain-containing protein 2 homolog...   306   1e-81
(Q54TM2) RecName: Full=LMBR1 domain-containing protein 2 homolog...    69   3e-10
(Q68DH5) RecName: Full=LMBR1 domain-containing protein 2;  &AK09...    64   1e-08
AK153728_1(AK153728|pid:none) Mus musculus 3 days neonate thymus...    64   1e-08
BC095971_1(BC095971|pid:none) Mus musculus LMBR1 domain containi...    64   1e-08
(Q8C561) RecName: Full=LMBR1 domain-containing protein 2;  &AK07...    64   1e-08
(Q5F3F5) RecName: Full=LMBR1 domain-containing protein 2;  &AJ85...    63   2e-08
AK051777_1(AK051777|pid:none) Mus musculus 12 days embryo spinal...    60   1e-07
(Q6P4P2) RecName: Full=LMBR1 domain-containing protein 2-B;  &BC...    60   1e-07
(Q61ZW5) RecName: Full=LMBR1 domain-containing protein 2 homolog;      60   2e-07
protein update 2009. 4.13
PSORT 

 psg: 1.02  gvh: 0.63  alm: 0.10  top: 0.67  tms: 0.27  mit: 0.33  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for CHS187 is pla
5' end seq. ID CHS187F
5' end seq. 
>CHS187F.Seq
AAATTCCAAATTATTTTAACACACTCACACACACACTGGAGAATTAAATAAAACGATAGA
TAAAAAAATAAAAAAAAAGAGAGAGAGGAAAGAAAGAGAGAGTGAGAGAGAGAGAAGGTC
AAATAAATAATAGTAATAATAAAAAATAAAAAACGAATAAATACAATATCATAAAGTTAT
GATTGTAATTTTCATTTTCATTTTAATAGCCGTTGGTTTACTCTCGACCAAAATCCTTCA
CAGATATATTTCAATAAAGAAAATACCATGGTACGTTTATATATCAGTTTGGATAGGTTG
GTTCATGTGTTTTAGTATTGTCATTTTGGTACCAATCGATATTTTATGTACAGATTATAG
ACAATGTAAACATATTAGTGATAGTCAATCTGAAAAATTAAATGAAATCATTACAAATAT
CAGTAATGGTACCAATAGTGGTAGTAATAATAATAATAATAATAATAATGAAATTATAAA
TAAATATGATTCATGTGAAGAACCATGGGCATATATTTCGAATGATAAATTAGAATATAT
TTATCAAACATTTTATTTTGGAACATTATTATTAACATGGTTAGTTTATCCATTGATGGG
GTTCGTTTGTATTGGCCNNNNNNNNNN
Length of 5' end seq. 627
3' end seq. ID CHS187Z
3' end seq. 
>CHS187Z.Seq
NNNNNNNNNNCATTTTCAGTTGTAATGGGTACAATGAATGTTGCACCATTTTTAGGAACT
TACTTTTTACATATATTTCCCATTGTTAATTGTTATTGTTTGTCTATCGACTTTGTTTAA
TGTTTACTCTAGAATTATGAATTGTTTGAATATTAGTAAATTTAGATTCGATGTAGATTT
CTCACATGAACAAATTGATGAAGGTAAATTCTTAATAGATAGTGAAAGAAGAAAATGGAC
TCAAAATAATATAAAACCTTTAAGTTCAAAATCACCACCACCATCTTTAGATTCAACTTC
AAATAATCCAAAACAAATCTTTAAATCTGGTTCAACTACAATTTCAAAGCAATCACCACC
AAATCTTAATGTTAGTGGTGGTAATATTAATAATAACAACACTAACAATGGTAATACAAG
TAGTGCTAGAAGTTTCATCGATTCATTCTTGAAAAAGAGTAGTAATAATAATAACAATAA
CAATAATAACAATAATCCATATGAACAAACATTATTATTCGACGAAAGTAATGATTTTGA
TGATGATGATGATATTGAATCTGGTGGTGCTGGTAGACCCACTTATAATGCACATTTATC
AAGTTCATTCAATGGTGGTGCAAATAGTACCTCCATTAGTGGTTATCCTCAAATCAATAA
AATGTTTGGTGGTGCAAATAGATATTCTCAATTACCAAAAAAATAAATTTTAAAAACAAT
AAGTATATAAATAATAAATAAATAAATAAATAAATAAATAAATAAATAAATCAATAAATA
AATAAATAAGTAAATAAATNATA
Length of 3' end seq. 803
Connected seq. ID CHS187P
Connected seq. 
>CHS187P.Seq
AAATTCCAAATTATTTTAACACACTCACACACACACTGGAGAATTAAATAAAACGATAGA
TAAAAAAATAAAAAAAAAGAGAGAGAGGAAAGAAAGAGAGAGTGAGAGAGAGAGAAGGTC
AAATAAATAATAGTAATAATAAAAAATAAAAAACGAATAAATACAATATCATAAAGTTAT
GATTGTAATTTTCATTTTCATTTTAATAGCCGTTGGTTTACTCTCGACCAAAATCCTTCA
CAGATATATTTCAATAAAGAAAATACCATGGTACGTTTATATATCAGTTTGGATAGGTTG
GTTCATGTGTTTTAGTATTGTCATTTTGGTACCAATCGATATTTTATGTACAGATTATAG
ACAATGTAAACATATTAGTGATAGTCAATCTGAAAAATTAAATGAAATCATTACAAATAT
CAGTAATGGTACCAATAGTGGTAGTAATAATAATAATAATAATAATAATGAAATTATAAA
TAAATATGATTCATGTGAAGAACCATGGGCATATATTTCGAATGATAAATTAGAATATAT
TTATCAAACATTTTATTTTGGAACATTATTATTAACATGGTTAGTTTATCCATTGATGGG
GTTCGTTTGTATTGGCC----------CATTTTCAGTTGTAATGGGTACAATGAATGTTG
CACCATTTTTAGGAACTTACTTTTTACATATATTTCCCATTGTTAATTGTTATTGTTTGT
CTATCGACTTTGTTTAATGTTTACTCTAGAATTATGAATTGTTTGAATATTAGTAAATTT
AGATTCGATGTAGATTTCTCACATGAACAAATTGATGAAGGTAAATTCTTAATAGATAGT
GAAAGAAGAAAATGGACTCAAAATAATATAAAACCTTTAAGTTCAAAATCACCACCACCA
TCTTTAGATTCAACTTCAAATAATCCAAAACAAATCTTTAAATCTGGTTCAACTACAATT
TCAAAGCAATCACCACCAAATCTTAATGTTAGTGGTGGTAATATTAATAATAACAACACT
AACAATGGTAATACAAGTAGTGCTAGAAGTTTCATCGATTCATTCTTGAAAAAGAGTAGT
AATAATAATAACAATAACAATAATAACAATAATCCATATGAACAAACATTATTATTCGAC
GAAAGTAATGATTTTGATGATGATGATGATATTGAATCTGGTGGTGCTGGTAGACCCACT
TATAATGCACATTTATCAAGTTCATTCAATGGTGGTGCAAATAGTACCTCCATTAGTGGT
TATCCTCAAATCAATAAAATGTTTGGTGGTGCAAATAGATATTCTCAATTACCAAAAAAA
TAAATTTTAAAAACAATAAGTATATAAATAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATCAATAAATAAATAAATAAGTAAATAAATNATA
Length of connected seq. 1410
Full length Seq ID -
Full length Seq. -
Length of full length seq. -