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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS178
Library CH
(Link to library)
Clone ID CHS178
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15337-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS178 (CHS178Q) /CSM/CH/CHS1-D/CHS178Q.Seq.d/
XXXXXXXXXXACTGGTATCAATAATTTGGATGCATTGGCTCAACAAGCTGACGCTGAAAG
AATTGAAGCCGAGAAGAAATATTTAGAGAATGGTTTTGATTTGGATGATGTTGCTGAACG
TGAACTATTGGCTGCCGCTAAAACCATTGAAGATGCTGCAAACTCATTATTGGCCGCAAA
ATCAAAGAGAGCTCCAAAGAAGGAGGGTGATTCACCAGATGTTGCTGAGGCAATCCTTGA
GGCTGCTATGGCAATCACTGGTGCTACTTCCACATTGGTTGGTGCCGCCACTTTAGCACA
AAGAGAACGTGTCGAAAAGGGTAGAACAAGTGATGGTGGTCCACTCTATAGAAAGGATCC
AACTTGGGCTGAAGGTTTAATCTCTGCTGCAAAATCTGTTGCCCAAGCCACTAAAGCTTT
GGTAGATAATGCCAACAAGACAGCATCTGGTCAAGAGATCCCAGGTGGTACAGAAGAAGC
TCTCATTGCAACTTCGATGGCTGTAACTGCTGCAACTTCTCAATTGGTCTCTGCTTGTAA
ATCTAAATCTGATATCAATAGTCCTTCTCAACATAAACTTTCAAATGCTGCCAAATCCGT
ATCCAATGCAACCAATCTTTTAGTGGCTGCAGCCAAAGCTGTCGCTGCTAAAGTCGCCTC
TGAAGAGGATATCGATTTCGATAAACTCACTGTCACTGGTTATAAAGTTAAAGAAATGGA
ACAACAAATGGCAATTCTCAGATTAGAAAAAGAATTAGAAGTCGCTAGAAAAGGTTTAAG
TGTTATTAGAAAGAAACAATAGACGAAA
sequence update 2002. 9.10
Translated Amino Acid sequence 
---GINNLDALAQQADAERIEAEKKYLENGFDLDDVAERELLAAAKTIEDAANSLLAAKS
KRAPKKEGDSPDVAEAILEAAMAITGATSTLVGAATLAQRERVEKGRTSDGGPLYRKDPT
WAEGLISAAKSVAQATKALVDNANKTASGQEIPGGTEEALIATSMAVTAATSQLVSACKS
KSDINSPSQHKLSNAAKSVSNATNLLVAAAKAVAAKVASEEDIDFDKLTVTGYKVKEMEQ
QMAILRLEKELEVARKGLSVIRKKQ*tk
Translated Amino Acid sequence (All Frames) 
Frame A:
---lvsiiwmhwlnkltlkelkprrni*rmvliwmmllnvnywlplkplkmlqthywpqn
qrelqrrrvihqmllrqslrllwqslvllphwlvppl*hkenvskrveqvmvvhsieriq
lglkv*sllqnllpkplklw*imptrqhlvkrsqvvqkklslqlrwl*llqllnwsllvn
lnlisivllninfqmlpnpypmqpif*wlqpklsllksplkrisisinslslviklkkwn
nkwqfsd*kkn*kslekv*vllernnrr


Frame B:
---wyq*fgcigsts*r*kn*sreeifrewf*fg*cc*t*tigcr*nh*rcckliigrki
kesskegg*ftrcc*gnp*gcygnhwcyfhigwcrhfstkrtcrkg*nk*wwstl*kgsn
lg*rfnlcckiccpsh*sfgr*cqqdsiwsrdprwyrrsshcnfdgcnccnfsiglcl*i
*i*yq*sfst*tfkccqiriqcnqsfsgcsqscrc*srl*rgyrfr*thchwl*s*rngt
tngnsqirkrirsr*krfkcy*ketide


Frame C:
---GINNLDALAQQADAERIEAEKKYLENGFDLDDVAERELLAAAKTIEDAANSLLAAKS
KRAPKKEGDSPDVAEAILEAAMAITGATSTLVGAATLAQRERVEKGRTSDGGPLYRKDPT
WAEGLISAAKSVAQATKALVDNANKTASGQEIPGGTEEALIATSMAVTAATSQLVSACKS
KSDINSPSQHKLSNAAKSVSNATNLLVAAAKAVAAKVASEEDIDFDKLTVTGYKVKEMEQ
QMAILRLEKELEVARKGLSVIRKKQ*tk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHA557 (SHA557Q) /CSM/SH/SHA5-C/SHA557Q.Seq.d/                       1582   0.0
CHS178 (CHS178Q) /CSM/CH/CHS1-D/CHS178Q.Seq.d/                       1582   0.0
SHK510 (SHK510Q) /CSM/SH/SHK5-A/SHK510Q.Seq.d/                       1576   0.0
CHI561 (CHI561Q) /CSM/CH/CHI5-C/CHI561Q.Seq.d/                       1576   0.0
SHA409 (SHA409Q) /CSM/SH/SHA4-A/SHA409Q.Seq.d/                       1570   0.0
CHR147 (CHR147Q) /CSM/CH/CHR1-B/CHR147Q.Seq.d/                       1570   0.0
CHN144 (CHN144Q) /CSM/CH/CHN1-B/CHN144Q.Seq.d/                       1564   0.0
CHR474 (CHR474Q) /CSM/CH/CHR4-D/CHR474Q.Seq.d/                       1562   0.0
SHL395 (SHL395Q) /CSM/SH/SHL3-D/SHL395Q.Seq.d/                       1560   0.0
VHQ296 (VHQ296Q) /CSM/VH/VHQ2-D/VHQ296Q.Seq.d/                       1556   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U14576|U14576.2 Dictyostelium discoideum filopodin (talA) gene, complete cds.    56   7e-04  2
CP000040|CP000040.1 Bacillus cereus E33L plasmid pE33L466, complete sequence.    46   1.1    1
AL845327|AL845327.5 Mouse DNA sequence from clone RP23-213J9 on chromosome X.    46   1.1    1
AC117393|AC117393.2 Homo sapiens chromosome 3 clone RP11-372J9, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    44   4.0    4
AC167413|AC167413.1 Bos taurus clone CH240-152K21, *** SEQUENCING IN PROGRESS ***, 31 unordered pieces.    44   4.4    1
CR803624|CR803624.1 GR0AAA24BH12FM1 INRA BAC Bos taurus genomic clone INRAb_463H09, DNA sequence.    44   4.4    1
CL354732|CL354732.1 RPCI44_408G16.f RPCI-44 Sus scrofa genomic clone RPCI44_408G16, genomic survey sequence.    44   4.4    1
BA000016|BA000016.3 Clostridium perfringens str. 13 DNA, complete genome.    44   4.4    1
AC078816|AC078816.16 Homo sapiens 3 BAC RP11-600P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44   4.4    1
AC158855|AC158855.1 Bos taurus clone CH240-95K5, WORKING DRAFT SEQUENCE, 23 unordered pieces.    38   5.7    2
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54K81) RecName: Full=Talin-B;                                       173   5e-42
AB023655_1(AB023655|pid:none) Dictyostelium discoideum talB mRNA...   173   5e-42
(P54633) RecName: Full=Talin-A; AltName: Full=Filopodin;              153   5e-36
A57036(A57036)talin - slime mold (Dictyostelium discoideum)           153   5e-36
AE017345_306(AE017345|pid:none) Cryptococcus neoformans var. neo...   145   2e-33
EF107688_1(EF107688|pid:none) Emericella nidulans SlaB (slaB) ge...   140   4e-32
EF156414_1(EF156414|pid:none) Ascosphaera apis cytoskeleton asse...   139   1e-31
CP000501_90(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso...   138   2e-31
EF363034_3(EF363034|pid:none) Neosartorya fischeri apn1 (APN1) a...   135   1e-30
AM920435_781(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   135   1e-30
protein update 2009. 5.20
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHS178 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS178Z
3' end seq. 
>CHS178Z.Seq
NNNNNNNNNNACTGGTATCAATAATTTGGATGCATTGGCTCAACAAGCTGACGCTGAAAG
AATTGAAGCCGAGAAGAAATATTTAGAGAATGGTTTTGATTTGGATGATGTTGCTGAACG
TGAACTATTGGCTGCCGCTAAAACCATTGAAGATGCTGCAAACTCATTATTGGCCGCAAA
ATCAAAGAGAGCTCCAAAGAAGGAGGGTGATTCACCAGATGTTGCTGAGGCAATCCTTGA
GGCTGCTATGGCAATCACTGGTGCTACTTCCACATTGGTTGGTGCCGCCACTTTAGCACA
AAGAGAACGTGTCGAAAAGGGTAGAACAAGTGATGGTGGTCCACTCTATAGAAAGGATCC
AACTTGGGCTGAAGGTTTAATCTCTGCTGCAAAATCTGTTGCCCAAGCCACTAAAGCTTT
GGTAGATAATGCCAACAAGACAGCATCTGGTCAAGAGATCCCAGGTGGTACAGAAGAAGC
TCTCATTGCAACTTCGATGGCTGTAACTGCTGCAACTTCTCAATTGGTCTCTGCTTGTAA
ATCTAAATCTGATATCAATAGTCCTTCTCAACATAAACTTTCAAATGCTGCCAAATCCGT
ATCCAATGCAACCAATCTTTTAGTGGCTGCAGCCAAAGCTGTCGCTGCTAAAGTCGCCTC
TGAAGAGGATATCGATTTCGATAAACTCACTGTCACTGGTTATAAAGTTAAAGAAATGGA
ACAACAAATGGCAATTCTCAGATTAGAAAAAGAATTAGAAGTCGCTAGAAAAGGTTTAAG
TGTTATTAGAAAGAAACAATAGACGAAA
Length of 3' end seq. 808
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -