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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS173
Library CH
(Link to library)
Clone ID CHS173
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16313-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS173 (CHS173Q) /CSM/CH/CHS1-D/CHS173Q.Seq.d/
XXXXXXXXXXGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAA
ATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAA
TTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTC
CAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCA
CTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAG
GTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAA
GAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAAT
GTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTA
AAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCA
CACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATT
TCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAAT
TTAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAA
A
sequence update 2002. 9.10
Translated Amino Acid sequence 
---VLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCP
IGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKR
GMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFT
PVCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlsll*nliinkkt
Translated Amino Acid sequence (All Frames) 
Frame A:
---VLNCDDNNDCTEDKCLNTGICQNNPIDGCVTPSPVSIGGTIPPTTTGVSQVECDCCP
IGQKCLLVNGHEICIKPATTGGIPELTTGCAGTTTGRATGHYTESGTGNPHLCDRYHCKR
GMECHVVNGVPECLPSNYKCLDCLDLHCERQGDFTCFMVKNPNFISSKHSCYGESCCKFT
PVCKPKGHSL*kklkliyyffsfyyifllkfynqvn*fqfniti*tlsll*nliinkkt


Frame B:
---f*ivmiitivlkisv*ilvfvkiiqltvvlhhhqfqlvelslqpllvyhklsvivvq
lvknvy*smvmkfvlnqqplvvfqn*llvvlvqqlaglqvitqnqvqvihiyvidiivke
ewnvmllmvfqnvyhqttnv*iv*ifivrdkvispvlwlkiqisflvnivvmvnhvvnsh
qfanqkdthfkkn*n*yiisflfiiyfy*nfitkstnfnlilqykh*vycki***ikkq


Frame C:
---fkl****rly*r*vfkywylsk*sn*rlcytitsfnwwnypsnhywcits*v*llsn
wskmfisqws*nly*tsnhwwysrinywlcwynnwqgyrslhriryr*stfm**isl*kr
ngmscc*wcsrmftiklqmfrlfrssl*etr*fhlfyg*kskfhf**t*llw*iml*iht
slqtkrtltlkktkinilflffllyifikil*psqlisi*yyninikfivkfnnk*knk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL169 (SHL169Q) /CSM/SH/SHL1-C/SHL169Q.Seq.d/                       1116   0.0
SHK884 (SHK884Q) /CSM/SH/SHK8-D/SHK884Q.Seq.d/                       1116   0.0
SHJ893 (SHJ893Q) /CSM/SH/SHJ8-D/SHJ893Q.Seq.d/                       1116   0.0
SHJ886 (SHJ886Q) /CSM/SH/SHJ8-D/SHJ886Q.Seq.d/                       1116   0.0
SHJ668 (SHJ668Q) /CSM/SH/SHJ6-C/SHJ668Q.Seq.d/                       1116   0.0
SHG326 (SHG326Q) /CSM/SH/SHG3-B/SHG326Q.Seq.d/                       1116   0.0
SHF835 (SHF835Q) /CSM/SH/SHF8-B/SHF835Q.Seq.d/                       1116   0.0
SHF473 (SHF473Q) /CSM/SH/SHF4-D/SHF473Q.Seq.d/                       1116   0.0
SHF242 (SHF242Q) /CSM/SH/SHF2-B/SHF242Q.Seq.d/                       1116   0.0
SHD437 (SHD437Q) /CSM/SH/SHD4-B/SHD437Q.Seq.d/                       1116   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC020547|AC020547.7 Homo sapiens BAC clone RP11-134F3 from 2, complete sequence.    46   1.00   1
AL161506|AL161506.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 18.    42   1.7    3
AC168497|AC168497.2 Strongylocentrotus purpuratus clone R3-3117D9, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   2.0    2
CV752175|CV752175.1 SJL6-009_A06_SJL6-009A06-T3_039.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.9    1
CV752026|CV752026.1 SJL6-007_B08_SJL6-007B08-T3_063.ab1 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.9    1
CV739281|CV739281.1 SJAL_019_73.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.9    1
CV739266|CV739266.1 SJAL_019_64.T3 SJL Schistosoma japonicum cDNA, mRNA sequence.    44   3.9    1
CV581768|CV581768.1 sjmi-1-002_E12_sjmi-1-002E12-T3 Schistosoma japonicum miracidium cDNA Schistosoma japonicum cDNA, mRNA sequence.    44   3.9    1
CV682259|CV682259.1 sjs6-009_H10_sjs6-009H10-T3 SJS Schistosoma japonicum cDNA, mRNA sequence.    44   3.9    1
BU725144|BU725144.1 SJMBXF01 SJM Schistosoma japonicum cDNA, mRNA sequence.    44   3.9    1
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                324   2e-87
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                186   6e-46
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    52   2e-05
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    43   0.008
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    43   0.008
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    42   0.018
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    42   0.024
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 39   0.15
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    37   0.45
AB011475_1(AB011475|pid:none) Arabidopsis thaliana genomic DNA, ...    37   0.45
protein update 2009. 1. 4
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CHS173 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS173Z
3' end seq. 
>CHS173Z.Seq
NNNNNNNNNNGGTTTTAAATTGTGATGATAATAACGATTGTACTGAAGATAAGTGTTTAA
ATACTGGTATTTGTCAAAATAATCCAATTGACGGTTGTGTTACACCATCACCAGTTTCAA
TTGGTGGAACTATCCCTCCAACCACTACTGGTGTATCACAAGTTGAGTGTGATTGTTGTC
CAATTGGTCAAAAATGTTTATTAGTCAATGGTCATGAAATTTGTATTAAACCAGCAACCA
CTGGTGGTATTCCAGAATTAACTACTGGTTGTGCTGGTACAACAACTGGCAGGGCTACAG
GTCATTACACAGAATCAGGTACAGGTAATCCACATTTATGTGATAGATATCATTGTAAAA
GAGGAATGGAATGTCATGTTGTTAATGGTGTTCCAGAATGTTTACCATCAAACTACAAAT
GTTTAGATTGTTTAGATCTTCATTGTGAGAGACAAGGTGATTTCACCTGTTTTATGGTTA
AAAATCCAAATTTCATTTCTAGTAAACATAGTTGTTATGGTGAATCATGTTGTAAATTCA
CACCAGTTTGCAAACCAAAAGGACACTCACTTTAAAAAAAACTAAAATTAATATATTATT
TCTTTTCTTTTTATTATATATTTTTATTAAAATTTTATAACCAAGTCAACTAATTTCAAT
TTAATATTACAATATAAACATTAAGTTTATTGTAAAATTTAATAATAAATAAAAAAACAA
A
Length of 3' end seq. 721
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -