NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS163
Library CH
(Link to library)
Clone ID CHS163
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12984-1|Contig-U16415-1
Original site URL
Representative seq. ID CHS163P
(Link to Original site)
Representative DNA sequence 
>CHS163 (CHS163Q) /CSM/CH/CHS1-C/CHS163Q.Seq.d/
ATATTTACATATTTTTAAAAAATGGCAACAATTGAAGATACTTCAAAGATAATAACAATC
CAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATG
ATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTG
ACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATC
CAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTA
GATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTC
ATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACC
TCAAACCNTTACTTTTTAGAAGCCTACCGTCCAGTCCGTAXXXXXXXXXXAGGTTCATCA
CAAGGTGATGCTGGTGGTGCTGGTGATAGAGTTATCAATCAAATTTTAACTGAAATGGAT
GGTATGAACGCCAAGAAGAACGTTTTCATCATTGGTGCTACCAATAGACCAGATATCATC
GATCCAGNTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACATTCCATTACCAGAT
TTACCATNTNGTGTTGCCATTTTCAAGGNTTGTTTCAATAAATCNCCAGTCGCCAAGGAT
GTAGATTTAGAATTTTTGGGTCAAAANANTCAAGGTTTNTTTGGNGCAGATTTAACTGAA
ATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAAGGATATTGAATCC
NCCAAAGCCCGTCAAGAATTTGGTGATACCAANATGGAAGATGACTNTGTCGATCCAGTA
CCAGAAATTACTNGTGATCACTTCCAANAAGCCATGAGATNTGCTNGTNGTTCTGTATCC
GATAATGATATTANAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAAGAGGTCTT
GGTAATAANTTCAAATTCCCAGATCAANAATCTTCAGGTCAATTCAATCAAG
sequence update 2002.10.25
Translated Amino Acid sequence 
iyiflkngnn*RYFKDNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGD
TLLIKGKKRRDTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIH
VLPIDDTIEGLSGNLFDLYLKPLLFRSLPSSP---

---GSSQGDAGGAGDRVINQILTEMDGMNAKKNVFIIGATNRPDIIDPXILRPGXLDQLI
YIPLPDLPXXVAIFKXCFNKSPVAKDVDLEFLGQXXQGXFGADLTEICQRACKLAIXESI
EKDIESXKARQEFGDTXMEDDXVDPVPEITXDHFQXAMRXAXXSVSDNDIXKYESFAQTL
VQSRGLGNXFKFPDQXSSGQFNQ
Translated Amino Acid sequence (All Frames) 
Frame A:
iftyf*kmatiedtskiitiqf*nvkklqidyl*kkqlmmiiq*lh*iqrqwinynslev
thf*lkvkreeipfvlycqiqpsihqrsv*ikl*eiifvld*vt*fqftnvqmlnmanvf
mcyqlmip*kvsvaisliftsnxyfleayrpvr---

---rfitr*cwwcw**syqsnfn*ngwyerqeerfhhwcyq*tryhrsxyppsrxfrsth
lhsitrftxxcchfqglfq*ixsrqgcrfrifgskxsrfxwxrfn*nlstxl*isyx*ih
*kgy*ixqspsriw*yqxgr*lcrsstrnyx*slpxshexcxxfcir**yxki*klcsnf
ssikrsw**xqiprsxifrsiqs

Frame B:
ylhifkkwqqlkilqr**qsnfrt*kssk*iicrrsn****fssyiksrdngsitil*r*
htfn*r*kekryrlycivrsnhrsikdpye*sckk*ssc*ir*hdfsspmfrc*iwqtys
cvtn**yhrrsqwqsl*slpqtxtf*kptvqsv---

---GSSQGDAGGAGDRVINQILTEMDGMNAKKNVFIIGATNRPDIIDPXILRPGXLDQLI
YIPLPDLPXXVAIFKXCFNKSPVAKDVDLEFLGQXXQGXFGADLTEICQRACKLAIXESI
EKDIESXKARQEFGDTXMEDDXVDPVPEITXDHFQXAMRXAXXSVSDNDIXKYESFAQTL
VQSRGLGNXFKFPDQXSSGQFNQ

Frame C:
iyiflkngnn*RYFKDNNNPILERKKAPNRLFVEEAINDDNSVVTLNPETMDQLQFFRGD
TLLIKGKKRRDTVCIVLSDPTIDPSKIRMNKVVRNNLRVRLGDMISVHQCSDVKYGKRIH
VLPIDDTIEGLSGNLFDLYLKPLLFRSLPSSP---

---vhhkvmlvvlvielsikf*lkwmv*tprrtfsslvlpidqissiqxssvqvv*insf
tfhyqiyhxvlpfsrxvsinxqsprm*i*nfwvkxxkvxlxqi*lkfvnxpvn*lxvnpl
krilnppkpvknlvipxwkmtxsiqyqkllvitsxkp*dxlvvlypimilxnmkallkl*
fnqevlvixsnsqixnlqvnsik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS163 (CHS163Q) /CSM/CH/CHS1-C/CHS163Q.Seq.d/                       1923   0.0
CHG354 (CHG354Q) /CSM/CH/CHG3-C/CHG354Q.Seq.d/                       1033   0.0
AHL112 (AHL112Q) /CSM/AH/AHL1-A/AHL112Q.Seq.d/                       1031   0.0
AHE864 (AHE864Q) /CSM/AH/AHE8-C/AHE864Q.Seq.d/                       1031   0.0
CHN575 (CHN575Q) /CSM/CH/CHN5-D/CHN575Q.Seq.d/                       1027   0.0
AHM454 (AHM454Q) /CSM/AH/AHM4-C/AHM454Q.Seq.d/                       1027   0.0
AHD554 (AHD554Q) /CSM/AH/AHD5-C/AHD554Q.Seq.d/                       1027   0.0
VHM874 (VHM874Q) /CSM/VH/VHM8-D/VHM874Q.Seq.d/                       1025   0.0
VSI623 (VSI623Q) /CSM/VS/VSI6-A/VSI623Q.Seq.d/                       1025   0.0
VHM874 (VHM874Q) /CSM/VH/VHM8-D/VHM874Q.Seq.d/                       1025   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83085|U83085.2 Dictyostelium discoideum cell division cycle protein 48 (cdcD) mRNA, complete cds.  1025   0.0    4
CV239703|CV239703.1 WS0233.B21_D16 PT-MB-A-13 Populus balsamifera subsp. trichocarpa cDNA clone WS0233_D16 3', mRNA sequence.    68   9e-29  5
DV609105|DV609105.1 EST1212101 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLABK18 5' end, mRNA sequence.    64   3e-25  4
AL440049|AL440049.1 T7 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of  Candida tropicalis.   119   3e-25  2
CB814564|CB814564.1 USDA-FP_100042 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-01_D12 5', mRNA sequence.   125   2e-24  1
DV606296|DV606296.1 EST1209292 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLAB220 5' end, mRNA sequence.    64   8e-24  3
DV612328|DV612328.1 EST1215324 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLACM58 3' end, mRNA sequence.    64   1e-23  3
DV606297|DV606297.1 EST1209293 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLAB220 3' end, mRNA sequence.    64   1e-23  3
AL440050|AL440050.1 T3 end of clone BD0AA009F04 of library BD0AA from strain CBS 94 of  Candida tropicalis.   113   2e-23  2
CN594822|CN594822.1 TTE00014937 Normalized large Tetrahymena thermophila cDNA, mRNA sequence.   121   3e-23  1
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83085_1(U83085|pid:none) Dictyostelium discoideum cell division...   265   3e-69
DQ515925_1(DQ515925|pid:none) Nicotiana tabacum putative spindle...   206   8e-53
AL162751_7(AL162751|pid:none) Arabidopsis thaliana DNA chromosom...   202   9e-52
FB905989_1(FB905989|pid:none) Sequence 125262 from Patent WO2008...   201   3e-51
FB781564_1(FB781564|pid:none) Sequence 837 from Patent WO2008034...   201   3e-51
FB781494_1(FB781494|pid:none) Sequence 767 from Patent WO2008034...   201   3e-51
FB781796_1(FB781796|pid:none) Sequence 1069 from Patent WO200803...   201   3e-51
EU606206_1(EU606206|pid:none) Dimocarpus longan cell division cy...   200   5e-51
EU961444_1(EU961444|pid:none) Zea mays clone 235510 unknown mRNA.     200   5e-51
FB906007_1(FB906007|pid:none) Sequence 125280 from Patent WO2008...   201   6e-51
protein update 2009. 4.13
PSORT 

 psg: 0.45  gvh: 0.33  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.07  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CHS163 is nuc
5' end seq. ID CHS163F
5' end seq. 
>CHS163F.Seq
ATATTTACATATTTTTAAAAAATGGCAACAATTGAAGATACTTCAAAGATAATAACAATC
CAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATG
ATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTG
ACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATC
CAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTA
GATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTC
ATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACC
TCAAACCNTTACTTTTTAGAAGCCTACCGTCCAGTCCGTANNNNNNNNNN
Length of 5' end seq. 470
3' end seq. ID CHS163Z
3' end seq. 
>CHS163Z.Seq
NNNNNNNNNNAGGTTCATCACAAGGTGATGCTGGTGGTGCTGGTGATAGAGTTATCAATC
AAATTTTAACTGAAATGGATGGTATGAACGCCAAGAAGAACGTTTTCATCATTGGTGCTA
CCAATAGACCAGATATCATCGATCCAGNTATCCTCCGTCCAGGTNGTTTAGATCAACTCA
TTTACATTCCATTACCAGATTTACCATNTNGTGTTGCCATTTTCAAGGNTTGTTTCAATA
AATCNCCAGTCGCCAAGGATGTAGATTTAGAATTTTTGGGTCAAAANANTCAAGGTTTNT
TTGGNGCAGATTTAACTGAAATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCA
TTGAAAAGGATATTGAATCCNCCAAAGCCCGTCAAGAATTTGGTGATACCAANATGGAAG
ATGACTNTGTCGATCCAGTACCAGAAATTACTNGTGATCACTTCCAANAAGCCATGAGAT
NTGCTNGTNGTTCTGTATCCGATAATGATATTANAAAATATGAAAGCTTTGCTCAAACTT
TAGTTCAATCAAGAGGTCTTGGTAATAANTTCAAATTCCCAGATCAANAATCTTCAGGTC
AATTCAATCAAG
Length of 3' end seq. 612
Connected seq. ID CHS163P
Connected seq. 
>CHS163P.Seq
ATATTTACATATTTTTAAAAAATGGCAACAATTGAAGATACTTCAAAGATAATAACAATC
CAATTTTAGAACGTAAAAAAGCTCCAAATAGATTATTTGTAGAAGAAGCAATTAATGATG
ATAATTCAGTAGTTACATTAAATCCAGAGACAATGGATCAATTACAATTCTTTAGAGGTG
ACACACTTTTAATTAAAGGTAAAAAGAGAAGAGATACCGTTTGTATTGTATTGTCAGATC
CAACCATCGATCCATCAAAGATCCGTATGAATAAAGTTGTAAGAAATAATCTTCGTGTTA
GATTAGGTGACATGATTTCAGTTCACCAATGTTCAGATGTTAAATATGGCAAACGTATTC
ATGTGTTACCAATTGATGATACCATAGAAGGTCTCAGTGGCAATCTCTTTGATCTTTACC
TCAAACCNTTACTTTTTAGAAGCCTACCGTCCAGTCCGTA----------AGGTTCATCA
CAAGGTGATGCTGGTGGTGCTGGTGATAGAGTTATCAATCAAATTTTAACTGAAATGGAT
GGTATGAACGCCAAGAAGAACGTTTTCATCATTGGTGCTACCAATAGACCAGATATCATC
GATCCAGNTATCCTCCGTCCAGGTNGTTTAGATCAACTCATTTACATTCCATTACCAGAT
TTACCATNTNGTGTTGCCATTTTCAAGGNTTGTTTCAATAAATCNCCAGTCGCCAAGGAT
GTAGATTTAGAATTTTTGGGTCAAAANANTCAAGGTTTNTTTGGNGCAGATTTAACTGAA
ATTTGTCAACGNGCCTGTAAATTAGCTATTNGTGAATCCATTGAAAAGGATATTGAATCC
NCCAAAGCCCGTCAAGAATTTGGTGATACCAANATGGAAGATGACTNTGTCGATCCAGTA
CCAGAAATTACTNGTGATCACTTCCAANAAGCCATGAGATNTGCTNGTNGTTCTGTATCC
GATAATGATATTANAAAATATGAAAGCTTTGCTCAAACTTTAGTTCAATCAAGAGGTCTT
GGTAATAANTTCAAATTCCCAGATCAANAATCTTCAGGTCAATTCAATCAAG
Length of connected seq. 1062
Full length Seq ID -
Full length Seq. -
Length of full length seq. -