CHS162
Library CH
(Link to library)
Clone ID CHS162
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15935-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS162 (CHS162Q) /CSM/CH/CHS1-C/CHS162Q.Seq.d/
XXXXXXXXXXAACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTGGTGGTACATT
TGTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAGAGGGTAAACT
TTTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGATCACTGGTCC
AAATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGCCACTTCATTG
TGGTACTGTAATTAAACCAAGAAAGGAAGATATCTTATTCGTTCCACAAAAACCTTACTT
GGTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATGATATGAAGAA
ATTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATCCAAATCTTAC
TATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCCTCTCTGGTGG
TCAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAATACGCTATTCT
CGATGAATGTACAAGCGCCGTCTCTGATGAAGTCGAAGGTAAAATCTATGAAACTTGTAA
AAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGAGCTTACCACGA
TTACGTTTTACTCTTTAATGGTAGAGGTGGTTGGGAAGGTCAAAAATNATCATGATGANA
TCATNTAAAAAAACCATTATCACAT
sequence update 2002. 9.10
Translated Amino Acid sequence
---RSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGPN
GSGKSSLFRILGELWPLHCGTVIKPRKEDILFVPQKPYLVLGTLRDQIIYPHSHDDMKKL
GVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILD
ECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHDYVLLFNGRGGWEGQKXS**xh
xkkplsh


Translated Amino Acid sequence (All Frames)
Frame A:
---tdhqqvvqplsmvvvhllrvissnsrmfqsyhqrvnfw*ri*isklcqikm**slvq
mvqvrvhslessvnyghfivvl*lnqerkisysfhknltwywvpsvikssihivmmi*rn
wvspmmifnif*qp*iqillsfvngigmipkigslpslvvknkelpwlvsfiivhntlfs
mnvqapslmkskvksmklvknlvslyspflivhn*elttitfyslmvevvgkvknxhdxi
x*knhyh


Frame B:
---qiiskwcnhclwwwyic*g*fhqirecfnritrg*tfgrefrfpsyakskcndhwsk
wfr*eftl*npr*imatslwycn*tkkgrylirstktllgigypp*snhlst*s**yeei
gchr**sstsfsnrrsksyyhssmelg*yqrlvhcplwwsktknchgssllssstirysr
*mykrrl**srr*nl*nl*ktwyhfihrfssstikslprlrftl*w*rwlgrskximmxs
xkktiit


Frame C:
---RSSASGATTVYGGGTFVEGDFIKFENVSIVSPEGKLLVENLDFQVMPNQNVMITGPN
GSGKSSLFRILGELWPLHCGTVIKPRKEDILFVPQKPYLVLGTLRDQIIYPHSHDDMKKL
GVTDDDLQHLLATVDPNLTIIRQWNWDDTKDWFTALSGGQKQRIAMARLFYHRPQYAILD
ECTSAVSDEVEGKIYETCKKLGITLFTVSHRPQLRAYHDYVLLFNGRGGWEGQKXS**xh
xkkplsh


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS162 (CHS162Q) /CSM/CH/CHS1-C/CHS162Q.Seq.d/ 1403 0.0
CFK157 (CFK157Q) /CSM/CF/CFK1-C/CFK157Q.Seq.d/ 1403 0.0
CFJ866 (CFJ866Q) /CSM/CF/CFJ8-C/CFJ866Q.Seq.d/ 1394 0.0
SFA844 (SFA844Q) /CSM/SF/SFA8-B/SFA844Q.Seq.d/ 1390 0.0
CHI244 (CHI244Q) /CSM/CH/CHI2-B/CHI244Q.Seq.d/ 1388 0.0
VHO767 (VHO767Q) /CSM/VH/VHO7-C/VHO767Q.Seq.d/ 1382 0.0
CHM189 (CHM189Q) /CSM/CH/CHM1-D/CHM189Q.Seq.d/ 1382 0.0
VHD794 (VHD794Q) /CSM/VH/VHD7-D/VHD794Q.Seq.d/ 1376 0.0
CHR260 (CHR260Q) /CSM/CH/CHR2-C/CHR260Q.Seq.d/ 1376 0.0
CHF448 (CHF448Q) /CSM/CH/CHF4-B/CHF448Q.Seq.d/ 1376 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY077633|AY077633.1 Dictyostelium discoideum ABC transporter ABCD.2 gene, complete cds. 1362 0.0 1
AF334035|AF334035.2 Sterkiella histriomuscorum putative ABC transporter gene, partial sequence. 56 9e-05 2
DV609990|DV609990.1 EST1212986 Glossina morsitans morsitans Fat body cDNA Glossina morsitans morsitans cDNA clone GLABP55 5' end, mRNA sequence. 44 0.004 2
BX563734|BX563734.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse68e09_p1c. 44 0.004 2
BX557866|BX557866.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse35c01_p1c. 44 0.004 2
BX553115|BX553115.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse127d08_p1c. 44 0.004 2
DR646487|DR646487.1 EST1036604 FvN Gibberella moniliformis cDNA clone FVNA377, mRNA sequence. 52 0.017 1
DR606347|DR606347.1 EST996475 FvG Gibberella moniliformis cDNA clone FVGBL28, mRNA sequence. 52 0.017 1
DR611648|DR611648.1 EST1001776 FvG Gibberella moniliformis cDNA clone FVGEC02, mRNA sequence. 52 0.017 1
DR661093|DR661093.1 EST1051210 FvN Gibberella moniliformis cDNA clone FVNCY19, mRNA sequence. 52 0.017 1
dna update 2005.11.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY077633_1(AY077633|pid:none) Dictyostelium discoideum ABC trans... 484 e-135
AE014298_3062(AE014298|pid:none) Drosophila melanogaster chromos... 261 1e-68
AK144060_1(AK144060|pid:none) Mus musculus adult male kidney cDN... 254 2e-66
AJ851381_1(AJ851381|pid:none) Gallus gallus mRNA for hypothetica... 252 1e-65
BC009119_1(BC009119|pid:none) Mus musculus ATP-binding cassette,... 252 1e-65
AK004660_1(AK004660|pid:none) Mus musculus adult male lung cDNA,... 251 1e-65
AK153298_1(AK153298|pid:none) Mus musculus bone marrow macrophag... 251 1e-65
T15802(T15802) hypothetical protein C44B7.9 - Caenorhabditis ele... 251 2e-65
AE017343_388(AE017343|pid:none) Cryptococcus neoformans var. neo... 251 2e-65
(P16970) RecName: Full=ATP-binding cassette sub-family D member ... 251 2e-65
protein update 2009. 5.20
PSORT

psg: 0.88 gvh: 0.36 alm: 0.43 top: 0.27 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CHS162 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS162Z
3' end seq.
>CHS162Z.Seq
NNNNNNNNNNAACAGATCATCAGCAAGTGGTGCAACCACTGTCTATGGTGGTGGTACATT
TGTTGAGGGTGATTTCATCAAATTCGAGAATGTTTCAATCGTATCACCAGAGGGTAAACT
TTTGGTAGAGAATTTAGATTTCCAAGTTATGCCAAATCAAAATGTAATGATCACTGGTCC
AAATGGTTCAGGTAAGAGTTCACTCTTTAGAATCCTCGGTGAATTATGGCCACTTCATTG
TGGTACTGTAATTAAACCAAGAAAGGAAGATATCTTATTCGTTCCACAAAAACCTTACTT
GGTATTGGGTACCCTCCGTGATCAAATCATCTATCCACATAGTCATGATGATATGAAGAA
ATTGGGTGTCACCGATGATGATCTTCAACATCTTTTAGCAACCGTAGATCCAAATCTTAC
TATCATTCGTCAATGGAATTGGGATGATACCAAAGATTGGTTCACTGCCCTCTCTGGTGG
TCAAAAACAAAGAATTGCCATGGCTCGTCTCTTTTATCATCGTCCACAATACGCTATTCT
CGATGAATGTACAAGCGCCGTCTCTGATGAAGTCGAAGGTAAAATCTATGAAACTTGTAA
AAAACTTGGTATCACTTTATTCACCGTTTCTCATCGTCCACAATTAAGAGCTTACCACGA
TTACGTTTTACTCTTTAATGGTAGAGGTGGTTGGGAAGGTCAAAAATNATCATGATGANA
TCATNTAAAAAAACCATTATCACAT
Length of 3' end seq. 745
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -