CHS161
Library CH
(Link to library)
Clone ID CHS161
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS161 (CHS161Q) /CSM/CH/CHS1-C/CHS161Q.Seq.d/
XXXXXXXXXXATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCC
AGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGA
AGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGT
AACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACA
AGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCA
ACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAAT
GGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTT
ACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGC
AACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACA
AGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGT
TGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGANT
sequence update 2002. 9.10
Translated Amino Acid sequence
---ALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVT
QMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMD
QLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQD
QQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQEX


Translated Amino Acid sequence (All Frames)
Frame A:
---ll*rmkdfifkklkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*
lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkw
tn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdk
inkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkr


Frame B:
---cfre*ktlssrs*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcn
sngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ng
pirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktr
stketknstrercclle*c*ksst*igc*ig*k**trx


Frame C:
---ALENERLYLQEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVT
QMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMD
QLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQD
QQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQEX


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/ 862 0.0
SHC626 (SHC626Q) /CSM/SH/SHC6-B/SHC626Q.Seq.d/ 862 0.0
SHB168 (SHB168Q) /CSM/SH/SHB1-C/SHB168Q.Seq.d/ 862 0.0
SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/ 862 0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/ 862 0.0
SHA585 (SHA585Q) /CSM/SH/SHA5-D/SHA585Q.Seq.d/ 862 0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/ 862 0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/ 862 0.0
CHS161 (CHS161Q) /CSM/CH/CHS1-C/CHS161Q.Seq.d/ 862 0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/ 862 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 862 0.0 2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 3e-25 1
AC165111|AC165111.1 Bos taurus clone CH240-164H19, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces. 42 0.22 2
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.23 1
DR686823|DR686823.1 EST1076901 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABK24 3' end, mRNA sequence. 48 0.23 1
BQ699661|BQ699661.1 NXRV125_B09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV125_B09 5', mRNA sequence. 48 0.23 1
BP290409|BP290409.1 Homo sapiens cDNA clone: LNF05006, Sugano cDNA library, expressed in lung normal fibroblast. 48 0.23 1
DN582424|DN582424.1 94266905 Sea Urchin primary mesenchyme cell cDNA library Strongylocentrotus purpuratus cDNA clone PMCSPR2-174A10 3', mRNA sequence. 36 0.53 2
AC162641|AC162641.2 Bos taurus clone CH240-120J5, *** SEQUENCING IN PROGRESS ***, 27 unordered pieces. 44 0.55 4
DT461480|DT461480.1 GH_ON40P21.r GH_ON Gossypium hirsutum cDNA clone GH_ON40P21 3', mRNA sequence. 46 0.91 1
dna update 2005.11.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 281 1e-74
AF063866_46(AF063866|pid:none) Melanoplus sanguinipes entomopoxv... 39 0.13
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 39 0.13
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl... 39 0.13
(Q54DK4) RecName: Full=Alpha-protein kinase 1; Short=AK... 39 0.17
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l... 38 0.22
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr... 38 0.29
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei... 37 0.38
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al... 37 0.50
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 37 0.50
protein update 2009. 5.20
PSORT

psg: 0.75 gvh: 0.17 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for CHS161 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS161Z
3' end seq.
>CHS161Z.Seq
NNNNNNNNNNATTGCTTTAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCC
AGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGA
AGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGT
AACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACA
AGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCA
ACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAAT
GGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTT
ACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGC
AACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACA
AGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGT
TGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGANT
Length of 3' end seq. 658
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -