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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS153
Library CH
(Link to library)
Clone ID CHS153
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS153 (CHS153Q) /CSM/CH/CHS1-C/CHS153Q.Seq.d/
XXXXXXXXXXCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTT
CAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCT
CATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGAT
GCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTAT
GAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTA
CAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCA
AATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAA
CAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAA
TTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTAC
TTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAA
CAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAA
AATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAAT
CAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCT
TNCTTTTTAAAAAACT
sequence update 2002. 9.10
Translated Amino Acid sequence 
---ERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDA
IEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSN
KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYL
SDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQ
EKNQQLLEQEQNQK*fnhsxflkn
Translated Amino Acid sequence (All Frames) 
Frame A:
---reti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trc
h*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk
*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccll
e*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iks
rkkstiirtrtkskii*sfxlfkk


Frame B:
---ERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDA
IEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSN
KNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYL
SDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQ
EKNQQLLEQEQNQK*fnhsxflkn


Frame C:
---rdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmp
lnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqi
kiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*
vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ik
kkinny*nknkiknnliilxf*kt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        761   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        761   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        761   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        761   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        761   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        761   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        761   0.0
SHL708 (SHL708Q) /CSM/SH/SHL7-A/SHL708Q.Seq.d/                        761   0.0
SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        761   0.0
SHL645 (SHL645Q) /CSM/SH/SHL6-B/SHL645Q.Seq.d/                        761   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   761   0.0    3
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   7e-05  9
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.003  7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.003  8
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    34   0.011  9
BH133394|BH133394.1 ENTNI62TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38   0.016  2
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    36   0.021  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.030  14
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.079  14
dna update 2005.11.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   294   2e-78
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.32
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.42
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.54
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.71
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    37   0.93
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    36   1.6
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.6
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    35   2.1
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   2.1
protein update 2009. 5.20
PSORT 

 psg: 0.75  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHS153 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS153Z
3' end seq. 
>CHS153Z.Seq
NNNNNNNNNNCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTGAATAAAGCAGTT
CAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACTCT
CATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGAT
GCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTAT
GAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTA
CAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCA
AATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAA
CAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAA
TTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTAC
TTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAA
CAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAA
AATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAAT
CAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAATTTAATCATTCT
TNCTTTTTAAAAAACT
Length of 3' end seq. 796
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -