>CHS150 (CHS150Q) /CSM/CH/CHS1-C/CHS150Q.Seq.d/
AAAAATTACTTTTAAAAAATATCCAATAGTAGTACGAAAATATAACATTACATTATATAA
TTACAAAAATAAAATAAATAAAAATTGTAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAANGGGNANNAAAAAAAAANNGGNAANNAAAAAXXXXXXXXXX

KITFKKYPIVVRKYNITLYNYKNKINKNCKTKKKKKKKKKKKXXXKKXXXXK---

Frame A:
knyf*kisnsstki*hyii*lqk*nk*kl*nqkkkkkkkkkkxgxkkkxxxk---


Frame B:
KITFKKYPIVVRKYNITLYNYKNKINKNCKTKKKKKKKKKKKXXXKKXXXXK---


Frame C:
klllkniq**yenitlhyiitkik*ikivkpkkkkkkkkkkxgxxkkxgxx---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS194 (CHS194Q) /CSM/CH/CHS1-D/CHS194Q.Seq.d/                        127   5e-29
CHS150 (CHS150Q) /CSM/CH/CHS1-C/CHS150Q.Seq.d/                        127   5e-29
CHR508 (CHR508Q) /CSM/CH/CHR5-A/CHR508Q.Seq.d/                        127   5e-29
CHQ730 (CHQ730Q) /CSM/CH/CHQ7-B/CHQ730Q.Seq.d/                        127   5e-29
CHQ589 (CHQ589Q) /CSM/CH/CHQ5-D/CHQ589Q.Seq.d/                        127   5e-29
CHQ525 (CHQ525Q) /CSM/CH/CHQ5-B/CHQ525Q.Seq.d/                        127   5e-29
CHQ326 (CHQ326Q) /CSM/CH/CHQ3-B/CHQ326Q.Seq.d/                        127   5e-29
CHQ303 (CHQ303Q) /CSM/CH/CHQ3-A/CHQ303Q.Seq.d/                        127   5e-29
CHQ266 (CHQ266Q) /CSM/CH/CHQ2-C/CHQ266Q.Seq.d/                        127   5e-29
CHP787 (CHP787Q) /CSM/CH/CHP7-D/CHP787Q.Seq.d/                        127   5e-29

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC162594|AC162594.2 Bos taurus clone CH240-117D18, *** SEQUENCING IN PROGRESS ***, 39 unordered pieces.    34   0.12   2
DA498155|DA498155.1 Homo sapiens cDNA clone FCBBF3011411, 5' end, mRNA sequence.    46   0.21   1
AX926713|AX926713.1 Sequence 3 from Patent WO03084989.             46   0.21   1
AE017202|AE017202.1 Lactobacillus johnsonii NCC 533, section 3 of 7 of the complete genome.    46   0.21   1
CQ807231|CQ807231.1 Sequence 681 from Patent WO2004035803.         32   0.42   3
CQ806957|CQ806957.1 Sequence 407 from Patent WO2004035803.         32   0.42   3
AC146748|AC146748.16 Medicago truncatula clone mth2-65k8, complete sequence.    44   0.76   2
CS124684|CS124684.1 Sequence 370 from Patent WO2005059172.         32   0.77   3
CS124562|CS124562.1 Sequence 248 from Patent WO2005059172.         32   0.77   3
CR789883|CR789883.1 Pongo pygmaeus mRNA; EST DKFZp459P0566_r1 (from clone  DKFZp459P0566).    44   0.82   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 87,026,705

 psg: 0.61  gvh: -0.00  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.00
 nuc: 0.69  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for CHS150 is nuc

>CHS150F.Seq
AAAAATTACTTTTAAAAAATATCCAATAGTAGTACGAAAATATAACATTACATTATATAA
TTACAAAAATAAAATAAATAAAAATTGTAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAANGGGNANNAAAAAAAAANNGGNAANNAAAAANNNNNNNNNN