CHS145
Library CH
(Link to library)
Clone ID CHS145
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS145 (CHS145Q) /CSM/CH/CHS1-B/CHS145Q.Seq.d/
XXXXXXXXXXGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTT
GAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGT
ATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTA
GATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTA
CTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAAT
GAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAA
ATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAA
TTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAA
GAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAA
CAAATCCAAGATCACNGCTGCCTCAGTGG
sequence update 2002. 9.10
Translated Amino Acid sequence
---SPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLD
ENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQI
VEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQE
KQQSPDQIKNQLKNIQHEQQIQDHXCLS


Translated Amino Acid sequence (All Frames)
Frame A:
---ftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr
*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttn
r*tt*syqrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssr
ettis*pn*ksikkyst*ttnprsxlpqw


Frame B:
---SPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLD
ENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQI
VEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQE
KQQSPDQIKNQLKNIQHEQQIQDHXCLS


Frame C:
---hll*tlirl*lkwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*m
kmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnks
lnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkr
nnnlltklkin*kifnmnnkskitaasv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/ 585 e-166
SHL894 (SHL894Q) /CSM/SH/SHL8-D/SHL894Q.Seq.d/ 585 e-166
SHL890 (SHL890Q) /CSM/SH/SHL8-D/SHL890Q.Seq.d/ 585 e-166
SHL879 (SHL879Q) /CSM/SH/SHL8-D/SHL879Q.Seq.d/ 585 e-166
SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/ 585 e-166
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/ 585 e-166
SHL865 (SHL865Q) /CSM/SH/SHL8-C/SHL865Q.Seq.d/ 585 e-166
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/ 585 e-166
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/ 585 e-166
SHL817 (SHL817Q) /CSM/SH/SHL8-A/SHL817Q.Seq.d/ 585 e-166

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 585 0.0 2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 127 3e-25 1
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence. 36 0.013 7
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 1/4. 38 0.091 11
AB006702|AB006702.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPO12. 40 0.21 4
DT633626|DT633626.1 EST1148557 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFW90 3' end, mRNA sequence. 48 0.22 1
DT364098|DT364098.1 JGI_ANNN9278.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN9278 3', mRNA sequence. 48 0.22 1
DT347978|DT347978.1 JGI_CAAX10802.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX10802 5', mRNA sequence. 48 0.22 1
DT309975|DT309975.1 JGI_CAAX1517.fwd CAAX Pimephales promelas testis 7-8 month adults, males and females pooled (L) Pimephales promelas cDNA clone CAAX1517 5', mRNA sequence. 48 0.22 1
DT102344|DT102344.1 JGI_ANNN5669.rev ANNN Pimephales promelas Whole (L) Pimephales promelas cDNA clone ANNN5669 3', mRNA sequence. 48 0.22 1
dna update 2005.11.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 251 9e-66
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso... 36 0.76
(P47048) RecName: Full=Uncharacterized protein YJL049W; &AY6926... 35 1.3
FM992691_339(FM992691|pid:none) Candida dubliniensis CD36 chromo... 35 1.3
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c... 35 1.3
AP009511_3(AP009511|pid:none) Uncultured Termite group 1 bacteri... 35 1.7
CP001390_3408(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 35 2.2
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143; 35 2.2
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara... 34 2.9
AY064598_1(AY064598|pid:none) Gorilla gorilla forkhead/winged-he... 34 3.8
protein update 2009. 5.20
PSORT

psg: 0.81 gvh: 0.16 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for CHS145 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS145Z
3' end seq.
>CHS145Z.Seq
NNNNNNNNNNGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTT
GAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGT
ATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTA
GATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTA
CTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAAT
GAAAATCAACAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAA
ATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAA
AAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAA
TTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAA
GAGAAACAACAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAA
CAAATCCAAGATCACNGCTGCCTCAGTGG
Length of 3' end seq. 629
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -