>CHS144 (CHS144Q) /CSM/CH/CHS1-B/CHS144Q.Seq.d/
XXXXXXXXXXCTATGCAATTCTTAGATGCCAAAATCAATTNTCAAAATTGGCTTACCTTA
AAATTAGTCCTGTAACCCCTTCAAAACCAATGGAGCAAATCACTCAACCATCACCAATTT
CAACCAGTGAAGAAGCATTTGGTAAATTAAATAAACTTTCAATTTCTGAAGAACCATCAA
CATTATCAAATGAAAAATCTGATAAAACTACTGATGGTGGTGATCATCAAGATGAATCAA
TTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAA
CACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTACAACACCAA
ATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTCTCAATCATCCACTCCAAATA
AACAACAACTACCTCCACCACCACCACAACAAACAAAGAAAACCCAAATGGTATCTCATT
TCATGCCAACTGATGAATGGTTACAAGATATTAAAAAACAATTACCATTAGATAATATCT
TAAAAGTTATAACTCATTTATCACCACAAATTCAAGGTTTATGCACTGGTTCGGGATCTG
ACGAACAAAAAATCATGGACTACTTGAAGATGTCAACAATTGTTGGCATTTTCCATAACC
CAGGTCCAATAATGACTCGTCGTTATCATTCAAATGCTATTACAAAATCTTGGTTCATTG
CATACATGTGGTGTATCATTTATTTAGAAAATCATTCACCTCCATTATTCCTTCACACAA
ATATTAAATTATTCCAAG

---YAILRCQNQXSKLAYLKISPVTPSKPMEQITQPSPISTSEEAFGKLNKLSISEEPST
LSNEKSDKTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPN
QESPKLGGDGIDSQSSTPNKQQLPPPPPQQTKKTQMVSHFMPTDEWLQDIKKQLPLDNIL
KVITHLSPQIQGLCTGSGSDEQKIMDYLKMSTIVGIFHNPGPIMTRRYHSNAITKSWFIA
YMWCIIYLENHSPPLFLHTNIKLFQ

Frame A:
---YAILRCQNQXSKLAYLKISPVTPSKPMEQITQPSPISTSEEAFGKLNKLSISEEPST
LSNEKSDKTTDGGDHQDESISKSKVQSKPTTEHPNSTGATPSSTNSGTPTIKAFSSTTPN
QESPKLGGDGIDSQSSTPNKQQLPPPPPQQTKKTQMVSHFMPTDEWLQDIKKQLPLDNIL
KVITHLSPQIQGLCTGSGSDEQKIMDYLKMSTIVGIFHNPGPIMTRRYHSNAITKSWFIA
YMWCIIYLENHSPPLFLHTNIKLFQ


Frame B:
---mqfldakinxqnwltlklvl*plqnqwskslnhhqfqpvkkhlvn*infqflknhqh
yqmknlikllmvviikmnqfqsqrfkvnqllniqivlvqhhpqqiqehqlsklfqvqhqi
knhqnwvvmv*tlnhplqinnnylhhhhnkqrkpkwyliscqlmngykilknnyh*iis*
kl*liyhhkfkvyalvrdltnkkswtt*rcqqllafsitqvq**lvviiqmllqnlgslh
tcgvsfi*kiihlhysftqilnysk


Frame C:
---cns*mpksixkiglp*n*scnpfktnganhstitnfnq*rsiw*ik*tfnf*rtini
ik*ki**ny*ww*ssr*infkvkgsk*tny*tsk*ywcntilnkfrntnyqsffkyntks
ritkigw*wyrlsiihsk*ttttstttttnkenpngisfhan**mvtry*ktitir*ylk
synsfittnsrfmhwfgi*rtknhglledvnncwhfp*prsnndsslsfkcyykilvhci
hvvyhlfrksftsiipshky*iip

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS144 (CHS144Q) /CSM/CH/CHS1-B/CHS144Q.Seq.d/                       1556   0.0
SLA877 (SLA877Q) /CSM/SL/SLA8-D/SLA877Q.Seq.d/                       1548   0.0
CHQ792 (CHQ792Q) /CSM/CH/CHQ7-D/CHQ792Q.Seq.d/                       1443   0.0
SHD882 (SHD882Q) /CSM/SH/SHD8-D/SHD882Q.Seq.d/                       1441   0.0
AHC785 (AHC785Q) /CSM/AH/AHC7-D/AHC785Q.Seq.d/                       1437   0.0
CHG146 (CHG146Q) /CSM/CH/CHG1-B/CHG146Q.Seq.d/                       1435   0.0
CHF409 (CHF409Q) /CSM/CH/CHF4-A/CHF409Q.Seq.d/                       1431   0.0
SHL344 (SHL344Q) /CSM/SH/SHL3-B/SHL344Q.Seq.d/                       1427   0.0
CHI878 (CHI878Q) /CSM/CH/CHI8-D/CHI878Q.Seq.d/                       1425   0.0
AHK291 (AHK291Q) /CSM/AH/AHK2-D/AHK291Q.Seq.d/                       1423   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC124060|AC124060.3 Homo sapiens chromosome 8 clone RP11-65D13 map 8, WORKING DRAFT SEQUENCE.    50   6e-05  2
AC139351|AC139351.4 Mus musculus BAC clone RP24-156K15 from 8, complete sequence.    56   0.001  1
DE283369|DE283369.1 Oryzias latipes DNA, clone: ola1-242I19.F, genomic survey sequence.    54   0.005  1
DE092915|DE092915.1 Oryzias latipes DNA, clone: ola1-209J09.R, genomic survey sequence.    54   0.005  1
DE086252|DE086252.1 Oryzias latipes DNA, clone: ola1-188M19.F, genomic survey sequence.    54   0.005  1
DE078411|DE078411.1 Oryzias latipes DNA, clone: ola1-200D13.F, genomic survey sequence.    54   0.005  1
DE075571|DE075571.1 Oryzias latipes DNA, clone: ola1-178O04.F, genomic survey sequence.    54   0.005  1
DE057397|DE057397.1 Oryzias latipes DNA, clone: ola1-099G20.R, genomic survey sequence.    54   0.005  1
DE067405|DE067405.1 Oryzias latipes DNA, clone: ola1-164C24.R, genomic survey sequence.    54   0.005  1
AC027286|AC027286.14 Homo sapiens chromosome 3 clone RP11-329I19, WORKING DRAFT SEQUENCE, 19 unordered pieces.    52   0.018  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB171620_1(AB171620|pid:none) Macaca fascicularis brain cDNA clo...   101   2e-20
BC064723_1(BC064723|pid:none) Xenopus tropicalis hypothetical pr...   100   7e-20
(Q8IV36) RecName: Full=UPF0663 transmembrane protein C17orf28; A...    99   2e-19
AK304081_1(AK304081|pid:none) Homo sapiens cDNA FLJ57287 complet...    99   2e-19
AK044395_1(AK044395|pid:none) Mus musculus adult retina cDNA, RI...    99   2e-19
(Q8R1F6) RecName: Full=UPF0663 transmembrane protein C17orf28 ho...    99   2e-19
AK138882_1(AK138882|pid:none) Mus musculus 0 day neonate thymus ...    99   2e-19
AK050531_1(AK050531|pid:none) Mus musculus adult pancreas islet ...    99   2e-19
BC150166_1(BC150166|pid:none) Xenopus laevis hypothetical protei...    97   4e-19
BC076413_1(BC076413|pid:none) Danio rerio zgc:100980, mRNA (cDNA...    97   8e-19

 psg: 0.58  gvh: 0.37  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic

>> prediction for CHS144 is nuc

>CHS144Z.Seq
NNNNNNNNNNCTATGCAATTCTTAGATGCCAAAATCAATTNTCAAAATTGGCTTACCTTA
AAATTAGTCCTGTAACCCCTTCAAAACCAATGGAGCAAATCACTCAACCATCACCAATTT
CAACCAGTGAAGAAGCATTTGGTAAATTAAATAAACTTTCAATTTCTGAAGAACCATCAA
CATTATCAAATGAAAAATCTGATAAAACTACTGATGGTGGTGATCATCAAGATGAATCAA
TTTCAAAGTCAAAGGTTCAAAGTAAACCAACTACTGAACATCCAAATAGTACTGGTGCAA
CACCATCCTCAACAAATTCAGGAACACCAACTATCAAAGCTTTTTCAAGTACAACACCAA
ATCAAGAATCACCAAAATTGGGTGGTGATGGTATAGACTCTCAATCATCCACTCCAAATA
AACAACAACTACCTCCACCACCACCACAACAAACAAAGAAAACCCAAATGGTATCTCATT
TCATGCCAACTGATGAATGGTTACAAGATATTAAAAAACAATTACCATTAGATAATATCT
TAAAAGTTATAACTCATTTATCACCACAAATTCAAGGTTTATGCACTGGTTCGGGATCTG
ACGAACAAAAAATCATGGACTACTTGAAGATGTCAACAATTGTTGGCATTTTCCATAACC
CAGGTCCAATAATGACTCGTCGTTATCATTCAAATGCTATTACAAAATCTTGGTTCATTG
CATACATGTGGTGTATCATTTATTTAGAAAATCATTCACCTCCATTATTCCTTCACACAA
ATATTAAATTATTCCAAG