>CHS142 (CHS142Q) /CSM/CH/CHS1-B/CHS142Q.Seq.d/
CTTGGAACTGGTCAATTCATTGTCAATGGTGCCACTCAATTATCAAAAGGTATCACTTGT
CAAGACAAAGCAATCCTCTCCATTGCATCAAAAGCAACTGTTGATATCCTTGCCAACTCA
ATCTTTGCCGCTCCAATTGCAATTGCAAGCAATGCTGAAATTAAATTAACCAGTGGTAAC
CATGTATTCAATGGTGTAAATGGTGCAACCAACTCCATCATGACCATCGTAAATGGTGCA
GTCTCATTAAATGCCCCAAGTACCTGTCACACTGTTGACCTCACTGGTGCTGGTTCAATC
TTAGTTAACTCCAACTCTGTCATCAACACAATTAAAGCCGCAGCAACTGCTCAAGTTAAC
GTTGCCAAAGCTGGTCTCCTCAACATTAATGGTATTGCTGATATTAAAGCCATCCTCAAC
TTAAAAGATACTGCCAACGTTGTCGTCGCTGCCAAAGCCACTGCTAACCTCTTAGGTGGT
GTTAATGCTATTGCTCAATCACAAATTCAAGCTATGGATAGCTCTATCCTCAACATGGGT
AAAACCTGTACTCTCTCACAACCAATCATCATGGGTAAACAAGCTGTTATGXXXXXXXXX
X

LGTGQFIVNGATQLSKGITCQDKAILSIASKATVDILANSIFAAPIAIASNAEIKLTSGN
HVFNGVNGATNSIMTIVNGAVSLNAPSTCHTVDLTGAGSILVNSNSVINTIKAAATAQVN
VAKAGLLNINGIADIKAILNLKDTANVVVAAKATANLLGGVNAIAQSQIQAMDSSILNMG
KTCTLSQPIIMGKQAV---

Frame A:
LGTGQFIVNGATQLSKGITCQDKAILSIASKATVDILANSIFAAPIAIASNAEIKLTSGN
HVFNGVNGATNSIMTIVNGAVSLNAPSTCHTVDLTGAGSILVNSNSVINTIKAAATAQVN
VAKAGLLNINGIADIKAILNLKDTANVVVAAKATANLLGGVNAIAQSQIQAMDSSILNMG
KTCTLSQPIIMGKQAV---


Frame B:
lelvnslsmvplnyqkvslvktkqssplhqkqllislptqslplqlqlqamlkln*pvvt
mysmv*mvqptps*ps*mvqsh*mpqvpvtlltslvlvqs*ltptlsstqlkpqqllklt
lpklvsstlmvllilkpsst*kilptlsslpkpllts*vvlmlllnhkfklwialsstwv
kpvlshnqsswvnkll---


Frame C:
wnwsihcqwchsiikryhlsrqsnplhciksnc*ypcqlnlcrsncnckqc*n*inqw*p
ciqwckwcnqlhhdhrkwcslikcpkylshc*phwcwfnls*lqlchqhn*srsncss*r
cqswspqh*wyc*y*shpqlkrycqrcrrcqshc*plrwc*cycsitnssyg*lypqhg*
nlyslttnhhg*tscy---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS142 (CHS142Q) /CSM/CH/CHS1-B/CHS142Q.Seq.d/                       1172   0.0
CHO845 (CHO845Q) /CSM/CH/CHO8-B/CHO845Q.Seq.d/                       1172   0.0
CFI353 (CFI353Q) /CSM/CF/CFI3-C/CFI353Q.Seq.d/                       1172   0.0
SHL203 (SHL203Q) /CSM/SH/SHL2-A/SHL203Q.Seq.d/                        936   0.0
CHK885 (CHK885Q) /CSM/CH/CHK8-D/CHK885Q.Seq.d/                        676   0.0
CHP267 (CHP267Q) /CSM/CH/CHP2-C/CHP267Q.Seq.d/                        618   e-176
SHG826 (SHG826Q) /CSM/SH/SHG8-B/SHG826Q.Seq.d/                        341   7e-93
VSC304 (VSC304Q) /CSM/VS/VSC3-A/VSC304Q.Seq.d/                         36   0.59
VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                         36   0.59
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                         36   0.59

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U83087|U83087.1 Dictyostelium discoideum rsc12 mRNA, partial cds.   763   0.0    1
BF791090|BF791090.1 602251170F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE:4338593 5', mRNA sequence.    40   1.5    2
AC013641|AC013641.4 Homo sapiens clone RP11-16P13, WORKING DRAFT SEQUENCE, 6 unordered pieces.    38   2.3    3
BG736140|BG736140.1 rk50f05.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to TR:O15019 O15019 KIAA0301 ;, mRNA sequence.    44   3.3    1
AC015982|AC015982.9 Homo sapiens BAC clone RP11-554J4 from 2, complete sequence.    44   3.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U83087_1(U83087|pid:none) Dictyostelium discoideum rsc12 mRNA, p...   186   4e-46
CP001071_1694(CP001071|pid:none) Akkermansia muciniphila ATCC BA...    44   0.002
CP001111_854(CP001111|pid:none) Stenotrophomonas maltophilia R55...    40   0.047
CP001026_2226(CP001026|pid:none) Burkholderia ambifaria MC40-6 c...    39   0.080
AB366653_185(AB366653|pid:none) Ralstonia phage RSL1 DNA, comple...    36   0.89
AM743169_953(AM743169|pid:none) Stenotrophomonas maltophilia K27...    35   1.2
CP000325_1000(CP000325|pid:none) Mycobacterium ulcerans Agy99, c...    35   2.0
CR522871_56(CR522871|pid:none) Desulfotalea psychrophila LSv54, ...    35   2.0
CP000854_535(CP000854|pid:none) Mycobacterium marinum M, complet...    35   2.0
CP000108_1036(CP000108|pid:none) Chlorobium chlorochromatii CaD3...    34   2.6

 psg: 0.87  gvh: 0.56  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for CHS142 is cyt

>CHS142F.Seq
CTTGGAACTGGTCAATTCATTGTCAATGGTGCCACTCAATTATCAAAAGGTATCACTTGT
CAAGACAAAGCAATCCTCTCCATTGCATCAAAAGCAACTGTTGATATCCTTGCCAACTCA
ATCTTTGCCGCTCCAATTGCAATTGCAAGCAATGCTGAAATTAAATTAACCAGTGGTAAC
CATGTATTCAATGGTGTAAATGGTGCAACCAACTCCATCATGACCATCGTAAATGGTGCA
GTCTCATTAAATGCCCCAAGTACCTGTCACACTGTTGACCTCACTGGTGCTGGTTCAATC
TTAGTTAACTCCAACTCTGTCATCAACACAATTAAAGCCGCAGCAACTGCTCAAGTTAAC
GTTGCCAAAGCTGGTCTCCTCAACATTAATGGTATTGCTGATATTAAAGCCATCCTCAAC
TTAAAAGATACTGCCAACGTTGTCGTCGCTGCCAAAGCCACTGCTAACCTCTTAGGTGGT
GTTAATGCTATTGCTCAATCACAAATTCAAGCTATGGATAGCTCTATCCTCAACATGGGT
AAAACCTGTACTCTCTCACAACCAATCATCATGGGTAAACAAGCTGTTATGNNNNNNNNN
N