CHS138
Library CH
(Link to library)
Clone ID CHS138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS138 (CHS138Q) /CSM/CH/CHS1-B/CHS138Q.Seq.d/
XXXXXXXXXXGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGT
AATCTTTGCTTTCGTTATGTCTCAAATTGTNGCTACCTTTATTGGTGTATATGGTTTCCG
TGGTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATNT
CCAAGGTTGTGGTTGGGGTTGGGCTGTTTGTGATTGGATTTGGTGTTTCCTTTGGTACAT
TCCAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAAT
CAATAAANATGCACTCCGTAAAATCTATGGTTGGTNCGGTAAAGAAATCCCAAAGGAAGC
AACTCAAGTCTCTCATAAAG
sequence update 2002. 9.10
Translated Amino Acid sequence
---SRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNXQ
GCGWGWAVCDWIWCFLWYIPMDFIKLGVTYILRGKIEPINKXALRKIYGWXGKEIPKEAT
QVSHK


Translated Amino Acid sequence (All Frames)
Frame A:
---yhvvkvsltlnvqvil*sllslclklxlpllvymvsvvihmipfpiiqiiqymvqxs
kvvvgvglfvigfgvsfgtfqwisln*vspifsvvrlnqsixmhsvksmvgxvkksqrkq
lkslik


Frame B:
---it*srflll*tsr*scnlcfryvsncxylywciwfpwlst*flfr*srlsstwykxp
rlwlglgcl*ldlvfplvhsngfh*irchlyspw*d*tnq*xctp*nlwlvr*rnpkgsn
ssls*


Frame C:
---SRSQGFSYFERPGNLVIFAFVMSQIVATFIGVYGFRGYPHDSFSDNPDYPVHGTNXQ
GCGWGWAVCDWIWCFLWYIPMDFIKLGVTYILRGKIEPINKXALRKIYGWXGKEIPKEAT
QVSHK


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CHS138 (CHS138Q) /CSM/CH/CHS1-B/CHS138Q.Seq.d/ 710 0.0
VSE676 (VSE676Q) /CSM/VS/VSE6-D/VSE676Q.Seq.d/ 686 0.0
VSB710 (VSB710Q) /CSM/VS/VSB7-A/VSB710Q.Seq.d/ 686 0.0
VHP712 (VHP712Q) /CSM/VH/VHP7-A/VHP712Q.Seq.d/ 686 0.0
VHP530 (VHP530Q) /CSM/VH/VHP5-B/VHP530Q.Seq.d/ 686 0.0
VHO253 (VHO253Q) /CSM/VH/VHO2-C/VHO253Q.Seq.d/ 686 0.0
VHN640 (VHN640Q) /CSM/VH/VHN6-B/VHN640Q.Seq.d/ 686 0.0
VHN486 (VHN486Q) /CSM/VH/VHN4-D/VHN486Q.Seq.d/ 686 0.0
VHN420 (VHN420Q) /CSM/VH/VHN4-A/VHN420Q.Seq.d/ 686 0.0
VHM581 (VHM581Q) /CSM/VH/VHM5-D/VHM581Q.Seq.d/ 686 0.0

own update 2002.10. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X98286|X98286.1 D.discoideum mRNA for P-type ATPase. 686 0.0 1
AC119653|AC119653.7 Rattus norvegicus clone CH230-238B21, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 2.0 1
AC112084|AC112084.5 Rattus norvegicus clone CH230-239N20, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 2.0 1
AB086374|AB086374.1 Sesbania rostrata srha5 mRNA for plasma membrane H+-ATPase, complete cds. 32 4.7 2
AJ310523|AJ310523.1 Vicia faba L. mRNA for P-type H+-ATPase (vha4 gene). 32 4.7 2
E07322|E07322.1 cDNA coding H+ translocation ATPase. 32 4.8 2
BX005002|BX005002.9 Zebrafish DNA sequence from clone CH211-130M12. 36 6.0 4
AC106567|AC106567.5 Rattus norvegicus clone CH230-52K15, WORKING DRAFT SEQUENCE, 2 unordered pieces. 40 7.9 2
AX059539|AX059539.1 Sequence 272 from Patent WO0055325. 42 8.0 1
AC123423|AC123423.3 Rattus norvegicus clone CH230-453L13, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces. 42 8.0 1
dna update 2005.11.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

T30580(T30580) P-type ATPase - slime mold (Dictyostelium discoid... 261 4e-69
(P54679) RecName: Full=Probable plasma membrane ATPase; ... 261 4e-69
D88424_1(D88424|pid:none) Cyanidium caldarium mRNA for plasma me... 84 2e-15
(Q9SJB3) RecName: Full=ATPase 5, plasma membrane-type; ... 81 1e-14
AC006954_18(AC006954|pid:none) Arabidopsis thaliana chromosome 2... 81 1e-14
AB177650_1(AB177650|pid:none) Daucus carota DcPA 4 mRNA for plas... 80 2e-14
AB022442_1(AB022442|pid:none) Vicia faba VHA2 mRNA for p-type H+... 80 2e-14
DQ334807_1(DQ334807|pid:none) Petunia x hybrida cultivar R27 P-t... 80 2e-14
AM487422_1(AM487422|pid:none) Vitis vinifera contig VV78X258876.... 79 5e-14
(Q03194) RecName: Full=Plasma membrane ATPase 4; EC=3.6... 78 8e-14
protein update 2009. 5.20
PSORT

psg: 1.00 gvh: 0.59 alm: 0.25 top: 0.30 tms: 0.07 mit: 0.25 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.31 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

40.0 %: mitochondrial
16.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for CHS138 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CHS138Z
3' end seq.
>CHS138Z.Seq
NNNNNNNNNNGTATCACGTAGTCAAGGTTTCTCTTACTTTGAACGTCCAGGTAATCTTGT
AATCTTTGCTTTCGTTATGTCTCAAATTGTNGCTACCTTTATTGGTGTATATGGTTTCCG
TGGTTATCCACATGATTCCTTTTCCGATAATCCAGATTATCCAGTACATGGTACAAATNT
CCAAGGTTGTGGTTGGGGTTGGGCTGTTTGTGATTGGATTTGGTGTTTCCTTTGGTACAT
TCCAATGGATTTCATTAAATTAGGTGTCACCTATATTCTCCGTGGTAAGATTGAACCAAT
CAATAAANATGCACTCCGTAAAATCTATGGTTGGTNCGGTAAAGAAATCCCAAAGGAAGC
AACTCAAGTCTCTCATAAAG
Length of 3' end seq. 380
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -