NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS135
Library CH
(Link to library)
Clone ID CHS135
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15348-1|Contig-U16600-1
Original site URL
Representative seq. ID CHS135P
(Link to Original site)
Representative DNA sequence 
>CHS135 (CHS135Q) /CSM/CH/CHS1-B/CHS135Q.Seq.d/
AAAAATAAATTAAATAACTTTTAAAACAAATAATTTAAATAAAAAAATAAAAAAATAAAA
AATAAAAAAATGATTAATATTGAAGATATTTCAAAATCTTCAAACCAAAGTGAAGAAAAA
CAATTAAAAAGTACAAGTTCAAAACCAAAATACTCATTCGCAGCAAAAAGTTTATTCAAA
GGTTCAAATAATATTACACCATATTATTTATCAACCAGTAATACATTCCAATGTGTAGCA
TCTGAGTCAATTCAAACATGGCTTCTTTCGGATGATGGTCATATCTTTACATCCAGTGGT
AATTTTGTTTTAGATGTTTCATCAGGTGGTTATTTTGTTGAATTAGTACAACTTAATTCA
AATTCAAAAACTCAAATTTGGACAATTGATACAACAAATAATAAAATTCAAAACCAAGGT
AATGGTAATTACCTTGATATCGACTGTTTCAATATTTGTGTTGCACCTTTAAATGGAAAC
GCAACTCAACAATGGACAACTTTTAGAAGAGCACCAATTCCAACTGGTAATTGGGGCTAC
TTTCAAAGTGAACAATTGGGTTCAAATAATTATXXXXXXXXXXTTTCAGATGTGGCATCT
GTAGCTTACGAAATTGCAATGATTCAAATGTTATTACCAACTACTTATCAAATTTACTTT
ACATCAGCTGGTTATTGGGTACCATATTCAGATGGTGATTTCGCTTATAGTGATAACTCT
GGAACCTATATTATGGCCACTATCAAGTATAGTAATTCTTATCCTCCAAAGGAATTGACT
GATAAGTTATGGAATAATGGGGTTTCAAAACAAGAATTTTTCTTGTCAGCTTATGGTTGG
AATTTAGCTACCTCGCTCACCTACTACAATACTACTAACCAGTATAGTAATATCTTTAAA
TTAGCCTTTCCAACAATTAAAAATTTTACAGGAGTACCAATGCAATTTGTAATGACCAAT
GATGGTGATAATCTTGGTAATTTCACAGTCAAAACTCATTTTGCAAAATTCTTTTCAACA
TATTACAGTGTTGGAGATCTTGGTCATCATTATTTCGACATTGCTGTAACTGATATTAAC
AAAAACAAGGTTGCAAATTTCACAGTTGACATTAAATTAAAAGCTCTCGAAGGTAGTTAT
GTTTCAATCAAAACTGGTTCATTAGTTGTTCAGCCAGGTTATGCTGTTGGTAATCCAATT
TGTAATCAAGGTAGTTATTCTCTAATGTTTTCTGCTTCAATTTTAATTCCAATTTATAAA
TCAGAATAAAAAAATAAAATCATCAGAATATAAAAACCAATTTATATTCTTATCAATTAT
TAAAAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
knklnnf*nk*fk*KNKKIKNKKMINIEDISKSSNQSEEKQLKSTSSKPKYSFAAKSLFK
GSNNITPYYLSTSNTFQCVASESIQTWLLSDDGHIFTSSGNFVLDVSSGGYFVELVQLNS
NSKTQIWTIDTTNNKIQNQGNGNYLDIDCFNICVAPLNGNATQQWTTFRRAPIPTGNWGY
FQSEQLGSNNY---

---SDVASVAYEIAMIQMLLPTTYQIYFTSAGYWVPYSDGDFAYSDNSGTYIMATIKYSN
SYPPKELTDKLWNNGVSKQEFFLSAYGWNLATSLTYYNTTNQYSNIFKLAFPTIKNFTGV
PMQFVMTNDGDNLGNFTVKTHFAKFFSTYYSVGDLGHHYFDIAVTDINKNKVANFTVDIK
LKALEGSYVSIKTGSLVVQPGYAVGNPICNQGSYSLMFSASILIPIYKSE*knkiiri*k
piyiliny*k
Translated Amino Acid sequence (All Frames) 
Frame A:
knklnnf*nk*fk*KNKKIKNKKMINIEDISKSSNQSEEKQLKSTSSKPKYSFAAKSLFK
GSNNITPYYLSTSNTFQCVASESIQTWLLSDDGHIFTSSGNFVLDVSSGGYFVELVQLNS
NSKTQIWTIDTTNNKIQNQGNGNYLDIDCFNICVAPLNGNATQQWTTFRRAPIPTGNWGY
FQSEQLGSNNY---

---fqmwhl*ltklq*fkcyyqllikftlhqlvigyhiqmvislivitlepilwplssiv
ililqrn*lisygimgfqnknfscqlmvgi*lprspttilltsivisln*pfqqlkilqe
yqcnl**pmmviilvisqsklilqnsfqhitvleilviiistll*liltktrlqisqltl
n*klskvvmfqsklvh*lfsqvmllviqfvikvvil*cfllqf*fqfinqnkkiksseyk
nqfiflsiikn

Frame B:
kin*itfktnnlnkkikk*kikk*lilkifqnlqtkvkknn*kvqvqnqnthsqqkvysk
vqiilhhiiyqpvihsnv*hlsqfkhgffrmmvislhpvvilf*mfhqvvilln*ynliq
iqklkfgqliqqiikfktkvmvitlistvsifvlhl*metqlnngqlleehqfqlvigat
fkvnnwvqii---

---frcgicslrncndsnvitnylsnllyiswllgtifrw*frl***lwnlyyghyqv**
flsskgid**vme*wgfktriflvslwlefsylahllqyy*pv**yl*islsnn*kfyrs
tnaicndq*w**sw*fhsqnsfckilfnilqcwrswsslfrhccn*y*qkqgckfhs*h*
ikssrr*lcfnqnwfiscsarlccw*snl*sr*lfsnvfcfnfnsnl*irikk*nhqnik
tnlysyqllk

Frame C:
k*ik*llkqii*ikk*knkk*knd*y*ryfkifkpk*rktikkykfktkilirskkfiqr
fk*yytilfinq*yipmcsi*vnsnmasfg*wsylyiqw*fcfrcfirwlfc*istt*fk
fknsnldn*ynk**nskpr*w*lp*yrlfqylcctfkwkrnstmdnf*kstnsnw*lgll
sk*tigfk*l---

---SDVASVAYEIAMIQMLLPTTYQIYFTSAGYWVPYSDGDFAYSDNSGTYIMATIKYSN
SYPPKELTDKLWNNGVSKQEFFLSAYGWNLATSLTYYNTTNQYSNIFKLAFPTIKNFTGV
PMQFVMTNDGDNLGNFTVKTHFAKFFSTYYSVGDLGHHYFDIAVTDINKNKVANFTVDIK
LKALEGSYVSIKTGSLVVQPGYAVGNPICNQGSYSLMFSASILIPIYKSE*knkiiri*k
piyiliny*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS135 (CHS135Q) /CSM/CH/CHS1-B/CHS135Q.Seq.d/                       2391   0.0
VHP336 (VHP336Q) /CSM/VH/VHP3-B/VHP336Q.Seq.d/                       1425   0.0
VHA438 (VHA438Q) /CSM/VH/VHA4-B/VHA438Q.Seq.d/                       1425   0.0
AHH492 (AHH492Q) /CSM/AH/AHH4-D/AHH492Q.Seq.d/                       1421   0.0
VHJ744 (VHJ744Q) /CSM/VH/VHJ7-B/VHJ744Q.Seq.d/                       1419   0.0
CHR717 (CHR717Q) /CSM/CH/CHR7-A/CHR717Q.Seq.d/                       1411   0.0
VHN619 (VHN619Q) /CSM/VH/VHN6-A/VHN619Q.Seq.d/                       1405   0.0
VHL687 (VHL687Q) /CSM/VH/VHL6-D/VHL687Q.Seq.d/                       1405   0.0
AHB273 (AHB273Q) /CSM/AH/AHB2-D/AHB273Q.Seq.d/                       1405   0.0
VHQ236 (VHQ236Q) /CSM/VH/VHQ2-B/VHQ236Q.Seq.d/                       1402   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY282573|AY282573.1 Dictyostelium discoideum calcium up-regulated protein (cupG) gene, complete cds.  1245   0.0    1
AY282571|AY282571.1 Dictyostelium discoideum calcium up-regulated protein (cupE) gene, complete cds.   904   0.0    9
AY282568|AY282568.1 Dictyostelium discoideum calcium up-regulated protein (cupB) gene, complete cds.   904   0.0    3
AY282569|AY282569.1 Dictyostelium discoideum calcium up-regulated protein (cupC) gene, complete cds.   864   0.0    8
AY282572|AY282572.1 Dictyostelium discoideum calcium up-regulated protein (cupF) gene, complete cds.   833   0.0    8
AY282574|AY282574.1 Dictyostelium discoideum calcium up-regulated protein (cupA) gene, complete cds.   757   0.0    8
AY282570|AY282570.1 Dictyostelium discoideum calcium up-regulated protein (cupD) gene, complete cds.   537   0.0    6
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    62   3e-06  8
Z81128|Z81128.2 Caenorhabditis elegans Cosmid T23D8.               50   0.12   1
DD010736|DD010736.1 Diagnosis of known genetic Parameters within the MHC.    34   0.24   18
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7Z1Z9) RecName: Full=Calcium up-regulated protein G;  &AY28257...   443   e-123
(Q7Z1I0) RecName: Full=Calcium up-regulated protein F;                344   3e-93
AY282572_1(AY282572|pid:none) Dictyostelium discoideum calcium u...   343   1e-92
(Q7Z202) RecName: Full=Calcium up-regulated protein C;  &AY28256...   341   4e-92
AY282574_1(AY282574|pid:none) Dictyostelium discoideum calcium u...   312   1e-83
(Q55FW5) RecName: Full=Calcium up-regulated protein A;                310   5e-83
(Q54Z20) RecName: Full=Putative calcium up-regulated protein J;        79   3e-13
BC121700_1(BC121700|pid:none) Xenopus tropicalis GalNAc transfer...    40   0.23
CP001182_1362(CP001182|pid:none) Acinetobacter baumannii AB0057,...    38   0.68
CP001172_2275(CP001172|pid:none) Acinetobacter baumannii AB307-0...    38   0.68
protein update 2009. 4.13
PSORT 

 psg: 0.66  gvh: 0.29  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for CHS135 is cyt
5' end seq. ID CHS135F
5' end seq. 
>CHS135F.Seq
AAAAATAAATTAAATAACTTTTAAAACAAATAATTTAAATAAAAAAATAAAAAAATAAAA
AATAAAAAAATGATTAATATTGAAGATATTTCAAAATCTTCAAACCAAAGTGAAGAAAAA
CAATTAAAAAGTACAAGTTCAAAACCAAAATACTCATTCGCAGCAAAAAGTTTATTCAAA
GGTTCAAATAATATTACACCATATTATTTATCAACCAGTAATACATTCCAATGTGTAGCA
TCTGAGTCAATTCAAACATGGCTTCTTTCGGATGATGGTCATATCTTTACATCCAGTGGT
AATTTTGTTTTAGATGTTTCATCAGGTGGTTATTTTGTTGAATTAGTACAACTTAATTCA
AATTCAAAAACTCAAATTTGGACAATTGATACAACAAATAATAAAATTCAAAACCAAGGT
AATGGTAATTACCTTGATATCGACTGTTTCAATATTTGTGTTGCACCTTTAAATGGAAAC
GCAACTCAACAATGGACAACTTTTAGAAGAGCACCAATTCCAACTGGTAATTGGGGCTAC
TTTCAAAGTGAACAATTGGGTTCAAATAATTATNNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID CHS135Z
3' end seq. 
>CHS135Z.Seq
NNNNNNNNNNTTTCAGATGTGGCATCTGTAGCTTACGAAATTGCAATGATTCAAATGTTA
TTACCAACTACTTATCAAATTTACTTTACATCAGCTGGTTATTGGGTACCATATTCAGAT
GGTGATTTCGCTTATAGTGATAACTCTGGAACCTATATTATGGCCACTATCAAGTATAGT
AATTCTTATCCTCCAAAGGAATTGACTGATAAGTTATGGAATAATGGGGTTTCAAAACAA
GAATTTTTCTTGTCAGCTTATGGTTGGAATTTAGCTACCTCGCTCACCTACTACAATACT
ACTAACCAGTATAGTAATATCTTTAAATTAGCCTTTCCAACAATTAAAAATTTTACAGGA
GTACCAATGCAATTTGTAATGACCAATGATGGTGATAATCTTGGTAATTTCACAGTCAAA
ACTCATTTTGCAAAATTCTTTTCAACATATTACAGTGTTGGAGATCTTGGTCATCATTAT
TTCGACATTGCTGTAACTGATATTAACAAAAACAAGGTTGCAAATTTCACAGTTGACATT
AAATTAAAAGCTCTCGAAGGTAGTTATGTTTCAATCAAAACTGGTTCATTAGTTGTTCAG
CCAGGTTATGCTGTTGGTAATCCAATTTGTAATCAAGGTAGTTATTCTCTAATGTTTTCT
GCTTCAATTTTAATTCCAATTTATAAATCAGAATAAAAAAATAAAATCATCAGAATATAA
AAACCAATTTATATTCTTATCAATTATTAAAAAT
Length of 3' end seq. 754
Connected seq. ID CHS135P
Connected seq. 
>CHS135P.Seq
AAAAATAAATTAAATAACTTTTAAAACAAATAATTTAAATAAAAAAATAAAAAAATAAAA
AATAAAAAAATGATTAATATTGAAGATATTTCAAAATCTTCAAACCAAAGTGAAGAAAAA
CAATTAAAAAGTACAAGTTCAAAACCAAAATACTCATTCGCAGCAAAAAGTTTATTCAAA
GGTTCAAATAATATTACACCATATTATTTATCAACCAGTAATACATTCCAATGTGTAGCA
TCTGAGTCAATTCAAACATGGCTTCTTTCGGATGATGGTCATATCTTTACATCCAGTGGT
AATTTTGTTTTAGATGTTTCATCAGGTGGTTATTTTGTTGAATTAGTACAACTTAATTCA
AATTCAAAAACTCAAATTTGGACAATTGATACAACAAATAATAAAATTCAAAACCAAGGT
AATGGTAATTACCTTGATATCGACTGTTTCAATATTTGTGTTGCACCTTTAAATGGAAAC
GCAACTCAACAATGGACAACTTTTAGAAGAGCACCAATTCCAACTGGTAATTGGGGCTAC
TTTCAAAGTGAACAATTGGGTTCAAATAATTAT----------TTTCAGATGTGGCATCT
GTAGCTTACGAAATTGCAATGATTCAAATGTTATTACCAACTACTTATCAAATTTACTTT
ACATCAGCTGGTTATTGGGTACCATATTCAGATGGTGATTTCGCTTATAGTGATAACTCT
GGAACCTATATTATGGCCACTATCAAGTATAGTAATTCTTATCCTCCAAAGGAATTGACT
GATAAGTTATGGAATAATGGGGTTTCAAAACAAGAATTTTTCTTGTCAGCTTATGGTTGG
AATTTAGCTACCTCGCTCACCTACTACAATACTACTAACCAGTATAGTAATATCTTTAAA
TTAGCCTTTCCAACAATTAAAAATTTTACAGGAGTACCAATGCAATTTGTAATGACCAAT
GATGGTGATAATCTTGGTAATTTCACAGTCAAAACTCATTTTGCAAAATTCTTTTCAACA
TATTACAGTGTTGGAGATCTTGGTCATCATTATTTCGACATTGCTGTAACTGATATTAAC
AAAAACAAGGTTGCAAATTTCACAGTTGACATTAAATTAAAAGCTCTCGAAGGTAGTTAT
GTTTCAATCAAAACTGGTTCATTAGTTGTTCAGCCAGGTTATGCTGTTGGTAATCCAATT
TGTAATCAAGGTAGTTATTCTCTAATGTTTTCTGCTTCAATTTTAATTCCAATTTATAAA
TCAGAATAAAAAAATAAAATCATCAGAATATAAAAACCAATTTATATTCTTATCAATTAT
TAAAAAT
Length of connected seq. 1317
Full length Seq ID -
Full length Seq. -
Length of full length seq. -