CHS134 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CHS134
Library	CH (Link to library)
Clone ID	CHS134 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U15930-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CH/CHS1-B/CHS134Q.Seq.d/
Representative seq. ID	CHS134P (Link to Original site)
Representative DNA sequence	>CHS134 (CHS134Q) /CSM/CH/CHS1-B/CHS134Q.Seq.d/ GAAAAAAAAACCTTCAACATTATTTGTGACATTCTTTATTTTTAATTTCAATTTTTTAAT TAAAATTTAAAAGAAAGCGATTCAATAAATAGTTTTGAATTGGACGAAGAAGTAATGGAT AATACAAATTCAGCACAAGATCAAACATTTGAAGATATAAATTCTACAACAGATAATATA GAAAATACAAATGGTGGAGAAAAAGAAAAAAACAACAATAATGATAATAATAATGAACAA GAGATGAAACCAATTGAAGAAGCAGAACAACAACAACAAATACCAGATCTCACCAGAGAA GATATTCAAAAATTGAAAAAAGAAATTAAACAAACTTCTTTAGTAGTTGGCGAAAAATGG GCAATAATTAGTAACAAATGGTATAGTAAATGGTCAGAAGAAATAAACAGTAGAGAGGAA TTAGGACCAATAACCAATGATGATATTTTACAAAATGGTGAATTAAGACCAGGCATTAGC GAAACAACCAGCTTTACATTGGTTCCAGAAAAAACTTGGATCAAATTAAAGGAAGTCTAT GGTGGTGGTCCAGAAATTATTAGAAAAGTCATTAGAGGTACAATCAATAATAATATTGAT CTTCGTATTCCAATCTCTTTAAAATTCTTTAAATCTTCTXXXXXXXXXXAACATCAAAGA GCTACCAAAAAGTTTGATATTTGGTCCTCTCCACCAATTCTCGTTGTTCATTTGAAAAGA TTTAGCTACAAGAGATCTCACCGTGATAAACTTGATACTCTTGTCAAATTCCCATTCAAA GATCTCGATCTCTCTCAATATGTATTAAATAAAGATCAACCAGCACCAATCTACGATTTG TTTGCAGTTTCAAATCATTATGGTTCATTAGGTGGTGGTCATTACACTGCCTNTGCTTTA AATGAACCAGAGGATACTTGGTTCAAATTTGATGATTNTCATGCCTCTGAAGCAAATATA AACTCTATCGAATCTGATGCCGCCTATGTACTTTTCTATCGAAGAAAAGATACTTATGAT AAAAATTTTTATTTAAATCAACATTTAGGTGAAGTAATTTTAAATAATAATGATAATAAT AATAATAGTAATAGTAATAATGATAATAATAATAATAATGATAATAGTAATAATAATAAT TTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATGATAAT AATTTAAATAATAATAATAATAATAATACTGATGAAAATATGAATGTTAGTGATTCAAAT ACTACTACAACTACAACAACAACTTCAACTATCGCAACTCAAGAAGGTAATACAAATAAT CAATAAATAAAT
sequence update	2002.10.25
Translated Amino Acid sequence	ekktfniicdilyffqffnNLKESDSINSFELDEEVMDNTNSAQDQTFEDINSTTDNI ENTNGGEKEKNNNNDNNNEQEMKPIEEAEQQQQIPDLTREDIQKLKKEIKQTSLVVGEKW AIISNKWYSKWSEEINSREELGPITNDDILQNGELRPGISETTSFTLVPEKTWIKLKEVY GGGPEIIRKVIRGTINNNIDLRIPISLKFFKSS--- ---HQRATKKFDIWSSPPILVVHLKRFSYKRSHRDKLDTLVKFPFKDLDLSQYVLNKDQP APIYDLFAVSNHYGSLGGGHYTAXALNEPEDTWFKFDDXHASEANINSIESDAAYVLFYR RKDTYDKNFYLNQHLGEVILNNNDNNNNSNSNNDNNNNNDNSNNNNFNNNNNNNNNNNNN NSNNDNNLNNNNNNNTDENMNVSDSNTTTTTTTTSTIATQEGNTNNQ*in
Translated Amino Acid sequence (All Frames)	Frame A: ekktfniicdilyffqffnNLKESDSINSFELDEEVMDNTNSAQDQTFEDINSTTDNI ENTNGGEKEKNNNNDNNNEQEMKPIEEAEQQQQIPDLTREDIQKLKKEIKQTSLVVGEKW AIISNKWYSKWSEEINSREELGPITNDDILQNGELRPGISETTSFTLVPEKTWIKLKEVY GGGPEIIRKVIRGTINNNIDLRIPISLKFFKSS--- ---nikelpkslifgplhqfslfikdlatrdltvinlillsnshskisislnmyikin qhqsticlqfqiimvhvvvitlpxlmnqrilgsnlmixmplkqitlsnlmppmyfsi eekilmikifiinivkfiimiiiiivivimiiiiimiiviiiiliiiiiiiiiiii iivimiiiiiiiiiilmkimlviqillqlqqqlqlsqlkkviqiink Frame B: kkkpstlfvtffifnfnflikikkaiqivlnwtkkwiiqiqhkikhlkiilqqii* kiqmvekkkkttimiiimnkrnqlkkqnnnnkyqispekifknkkklnkll*lakng qlvtngivngqkktverndqpmmifykmvndqalakqpalhwfqkklgsnrksm vvvqkllekslevqsiiilifvfqslnslnl--- ---tsksyqkvylvlstnsrcsfekilqeisp*tyscqipiqrsrslsicikrst stnlrfvcsfkslwfirwwslhclcfktrgylvqi*xsclskyklyricrlctfls kkrylkflfkstfrsnfk***********************f********* ***fk**ykyec*fkyyynynnnfnyrnsrryksink Frame C: kknlqhylhslflisiflkfkrkrfnkfigrrsngykfstrsnirykfynryr kykwwrkrkkqq*****trdetnrsrttttntrshqrryskiekrntnffsswrkmg nnqmvmvrrnkqrgirtnnq*yftkwiktrhrnnqlyigsrknldqikgslw wwsrnykshrynqyssysnlfkilif--- ---HQRATKKFDIWSSPPILVVHLKRFSYKRSHRDKLDTLVKFPFKDLDLSQYVLNKDQP APIYDLFAVSNHYGSLGGGHYTAXALNEPEDTWFKFDDXHASEANINSIESDAAYVLFYR RKDTYDKNFYLNQHLGEVILNNNDNNNNSNSNNDNNNNNDNSNNNNFNNNNNNNNNNNNN NSNNDNNLNNNNNNNTDENMNVSDSNTTTTTTTTSTIATQEGNTNNQin
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CHS134 (CHS134Q) /CSM/CH/CHS1-B/CHS134Q.Seq.d/ 1594 0.0 VHD121 (VHD121Q) /CSM/VH/VHD1-A/VHD121Q.Seq.d/ 787 0.0 SHA295 (SHA295Q) /CSM/SH/SHA2-D/SHA295Q.Seq.d/ 775 0.0 CHN769 (CHN769Q) /CSM/CH/CHN7-C/CHN769Q.Seq.d/ 735 0.0 SHC779 (SHC779Q) /CSM/SH/SHC7-D/SHC779Q.Seq.d/ 662 0.0 VHO167 (VHO167Q) /CSM/VH/VHO1-C/VHO167Q.Seq.d/ 198 2e-49 SLE626 (SLE626Q) /CSM/SL/SLE6-B/SLE626Q.Seq.d/ 198 2e-49 VSI371 (VSI371Q) /CSM/VS/VSI3-C/VSI371Q.Seq.d/ 48 3e-04 VHP704 (VHP704Q) /CSM/VH/VHP7-A/VHP704Q.Seq.d/ 48 3e-04 VHB247 (VHB247Q) /CSM/VH/VHB2-B/VHB247Q.Seq.d/ 48 3e-04
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AJ581661\|AJ581661.1 Dictyostelium discoideum partial dstB gene for Dd-STATb protein, genomic RNA. 38 2e-05 4 AE014831\|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 42 2e-05 12 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 46 2e-05 6 AF104350\|AF104350.1 Dictyostelium discoideum prespore-specific protein (pspC) gene, partial cds; and unknown gene. 44 2e-05 5 U41289\|U41289.1 Dictyostelium discoideum K7 kinesin-like protein mRNA, complete cds. 46 7e-05 3 AX073278\|AX073278.1 Sequence 389 from Patent WO0102550. 48 8e-05 3 AL844507\|AL844507.1 Plasmodium falciparum chromosome 8. 46 1e-04 11 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 50 1e-04 7 AY159040\|AY159040.1 Dictyostelium discoideum LvsD (lvsD) gene, partial cds. 32 1e-04 6 AJ277590\|AJ277590.1 Dictyostelium discoideum iplA gene for inositol 1,4,5-trisphosphate receptor-like protein (IplA), exons 1-4. 46 2e-04 5
dna update	2005.11.26
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB011101_1(AB011101\|pid:none) Homo sapiens mRNA for KIAA0529 pro... 157 6e-37 (Q9Y4E8) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15;... 157 6e-37 AK122301_1(AK122301\|pid:none) Mus musculus mRNA for mKIAA0529 pr... 157 6e-37 AF013990_1(AF013990\|pid:none) Homo sapiens ubiquitin C-terminal ... 157 6e-37 BC125123_1(BC125123\|pid:none) Homo sapiens ubiquitin specific pe... 157 6e-37 (Q8R5H1) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 15;... 157 6e-37 AK168755_1(AK168755\|pid:none) Mus musculus 17 days pregnant adul... 157 6e-37 AK161771_1(AK161771\|pid:none) Mus musculus adult male thymus cDN... 157 6e-37 AK161469_1(AK161469\|pid:none) Mus musculus adult male testis cDN... 157 6e-37 BC042353_1(BC042353\|pid:none) Xenopus laevis similar to ubiquiti... 155 4e-36
protein update	2009. 4.13
PSORT	psg: 0.75 gvh: 0.23 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: nuclear 24.0 %: cytoplasmic 12.0 %: cytoskeletal 8.0 %: mitochondrial 4.0 %: vacuolar 4.0 %: vesicles of secretory system >> prediction for CHS134 is nuc
5' end seq. ID	CHS134F
5' end seq.	>CHS134F.Seq GAAAAAAAAACCTTCAACATTATTTGTGACATTCTTTATTTTTAATTTCAATTTTTTAAT TAAAATTTAAAAGAAAGCGATTCAATAAATAGTTTTGAATTGGACGAAGAAGTAATGGAT AATACAAATTCAGCACAAGATCAAACATTTGAAGATATAAATTCTACAACAGATAATATA GAAAATACAAATGGTGGAGAAAAAGAAAAAAACAACAATAATGATAATAATAATGAACAA GAGATGAAACCAATTGAAGAAGCAGAACAACAACAACAAATACCAGATCTCACCAGAGAA GATATTCAAAAATTGAAAAAAGAAATTAAACAAACTTCTTTAGTAGTTGGCGAAAAATGG GCAATAATTAGTAACAAATGGTATAGTAAATGGTCAGAAGAAATAAACAGTAGAGAGGAA TTAGGACCAATAACCAATGATGATATTTTACAAAATGGTGAATTAAGACCAGGCATTAGC GAAACAACCAGCTTTACATTGGTTCCAGAAAAAACTTGGATCAAATTAAAGGAAGTCTAT GGTGGTGGTCCAGAAATTATTAGAAAAGTCATTAGAGGTACAATCAATAATAATATTGAT CTTCGTATTCCAATCTCTTTAAAATTCTTTAAATCTTCTNNNNNNNNNN
Length of 5' end seq.	649
3' end seq. ID	CHS134Z
3' end seq.	>CHS134Z.Seq NNNNNNNNNNAACATCAAAGAGCTACCAAAAAGTTTGATATTTGGTCCTCTCCACCAATT CTCGTTGTTCATTTGAAAAGATTTAGCTACAAGAGATCTCACCGTGATAAACTTGATACT CTTGTCAAATTCCCATTCAAAGATCTCGATCTCTCTCAATATGTATTAAATAAAGATCAA CCAGCACCAATCTACGATTTGTTTGCAGTTTCAAATCATTATGGTTCATTAGGTGGTGGT CATTACACTGCCTNTGCTTTAAATGAACCAGAGGATACTTGGTTCAAATTTGATGATTNT CATGCCTCTGAAGCAAATATAAACTCTATCGAATCTGATGCCGCCTATGTACTTTTCTAT CGAAGAAAAGATACTTATGATAAAAATTTTTATTTAAATCAACATTTAGGTGAAGTAATT TTAAATAATAATGATAATAATAATAATAGTAATAGTAATAATGATAATAATAATAATAAT GATAATAGTAATAATAATAATTTTAATAATAATAATAATAATAATAATAATAATAATAAT AATAATAGTAATAATGATAATAATTTAAATAATAATAATAATAATAATACTGATGAAAAT ATGAATGTTAGTGATTCAAATACTACTACAACTACAACAACAACTTCAACTATCGCAACT CAAGAAGGTAATACAAATAATCAATAAATAAAT
Length of 3' end seq.	693
Connected seq. ID	CHS134P
Connected seq.	>CHS134P.Seq GAAAAAAAAACCTTCAACATTATTTGTGACATTCTTTATTTTTAATTTCAATTTTTTAAT TAAAATTTAAAAGAAAGCGATTCAATAAATAGTTTTGAATTGGACGAAGAAGTAATGGAT AATACAAATTCAGCACAAGATCAAACATTTGAAGATATAAATTCTACAACAGATAATATA GAAAATACAAATGGTGGAGAAAAAGAAAAAAACAACAATAATGATAATAATAATGAACAA GAGATGAAACCAATTGAAGAAGCAGAACAACAACAACAAATACCAGATCTCACCAGAGAA GATATTCAAAAATTGAAAAAAGAAATTAAACAAACTTCTTTAGTAGTTGGCGAAAAATGG GCAATAATTAGTAACAAATGGTATAGTAAATGGTCAGAAGAAATAAACAGTAGAGAGGAA TTAGGACCAATAACCAATGATGATATTTTACAAAATGGTGAATTAAGACCAGGCATTAGC GAAACAACCAGCTTTACATTGGTTCCAGAAAAAACTTGGATCAAATTAAAGGAAGTCTAT GGTGGTGGTCCAGAAATTATTAGAAAAGTCATTAGAGGTACAATCAATAATAATATTGAT CTTCGTATTCCAATCTCTTTAAAATTCTTTAAATCTTCT----------AACATCAAAGA GCTACCAAAAAGTTTGATATTTGGTCCTCTCCACCAATTCTCGTTGTTCATTTGAAAAGA TTTAGCTACAAGAGATCTCACCGTGATAAACTTGATACTCTTGTCAAATTCCCATTCAAA GATCTCGATCTCTCTCAATATGTATTAAATAAAGATCAACCAGCACCAATCTACGATTTG TTTGCAGTTTCAAATCATTATGGTTCATTAGGTGGTGGTCATTACACTGCCTNTGCTTTA AATGAACCAGAGGATACTTGGTTCAAATTTGATGATTNTCATGCCTCTGAAGCAAATATA AACTCTATCGAATCTGATGCCGCCTATGTACTTTTCTATCGAAGAAAAGATACTTATGAT AAAAATTTTTATTTAAATCAACATTTAGGTGAAGTAATTTTAAATAATAATGATAATAAT AATAATAGTAATAGTAATAATGATAATAATAATAATAATGATAATAGTAATAATAATAAT TTTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATGATAAT AATTTAAATAATAATAATAATAATAATACTGATGAAAATATGAATGTTAGTGATTCAAAT ACTACTACAACTACAACAACAACTTCAACTATCGCAACTCAAGAAGGTAATACAAATAAT CAATAAATAAAT
Length of connected seq.	1322
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas