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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS133
Library CH
(Link to library)
Clone ID CHS133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHS133P
(Link to Original site)
Representative DNA sequence 
>CHS133 (CHS133Q) /CSM/CH/CHS1-B/CHS133Q.Seq.d/
ATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATT
ATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACA
AGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAA
TGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGC
AACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTAT
ATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTA
TTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCC
AACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAA
CATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAAT
TAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAAC
CACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTAT
TTACCGATATCAATGGTAATGGAATTTTTGATGGXXXXXXXXXXCTATTTGGAGAGTGGA
GGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCACTGGTCTTAGA
TATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACC
AATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTAC
TATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAA
GGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAA
CAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTT
GGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATT
TCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTA
TCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATCATTATTGTGTA
ATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACT
CATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCT
TTTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTGGTATTATTCCAA
AAAAATAAAATAATAAAAAAATATAAA
sequence update 2002.10.25
Translated Amino Acid sequence 
f*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*iqikm
hcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpiqkii
tlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*LNKLVFHQAHLYLQLEL
VLIWGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFD---

---YLESGGKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDI
IVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYD
SSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVD
FSSNHYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFN
GCSLVLFQKNKIIKKYK
Translated Amino Acid sequence (All Frames) 
Frame A:
ifkyiy*yiliy*y**neniifiiinikynfkycikyfitsi*styfgikrkmlfrfk*k
civ**r*triwkc*nffrkcn*l*gk*isntlfic*wyiyi*winstynl*iyiyqskrl
ll*nl*kdiglstrctmyssngfs**fgsrsfsckylcl*hsid*tswcfirliytys*n
*c*fgvmlsklnhqlnhllnhllnhqhlhhllvvpslvyylpismvmeflm---

---lfgewr*mw*scwcrs*skithws*iwsr*w*fl**s*nrss*lyqcfwcn*rws*y
ycynwfrll*si*rfnslv*cnlw*ttkrllfiynlfkwsypisnlw*tkwsw*yyfsv*
ffsstiscw*sla*ykw*wysrcw*twyfrnhsilnlwstinsnksncirfkwlfqi*s*
fqfksllcnsccilpswffhynekc*snsskyk**cflinc**clchffyff*cwwllf*
wlfigiipkk*nnkki*

Frame B:
flniyiniy*yininkmkilyslllissiilntvlnissqvydqrilalkgkcyldsnkn
alydegepgfgnveislgnatdykgnkypiryssadgtfiydgltqrttyeftftnpkdy
yfetyektlacppgvpcirptvsadnlaadllvantfayniplikqvgvssgssiltvri
svdlglc*ansttnsttysttysttntstiyw*crrwfiiyryqw*wnf*w---

---YLESGGKCGSLVGAGVDQKSLTGLRYGPGNGNFFDNHKTGLHDYTNAFGATKGGRDI
IVTTGFDYYEAFEGSIRWYNATSGKQLKGYSLYITSSNGRTPSPTFGKQNGLGDITSVYD
SSLPQYRVGRVWLDINGNGIQDAGEPGISGITVFLIYGQQSTPTSQTVSDSNGYFKFEVD
FSSNHYCVIPVAFFQAGSSITMRNADPTHPNTNSDAFLSTVDNVYVTSFTSSDAGGYYFN
GCSLVLFQKNKIIKKYK

Frame C:
f*iyiliyinililik*kyyihyy*yqv*f*ily*ifhhkyminvfwh*kenvi*iqikm
hcmmkvnqdlemlkfl*emqliireiniqyvihllmvhlymmd*lnvqlmnlhlpiqkii
tlkpmkrhwlvhqvyhvfvqrfqliiwqqif*lqiplpitfh*LNKLVFHQAHLYLQLEL
VLIWGYVEQTQPPTQPPTQPPTQPPTPPPFTGSAVAGLLFTDINGNGIFD---

---iwrvevnvvvllvpeliknhslvldmvqvmvisliiikqvfmtipmllvqlkvvvil
llqlvsitmkhlkvqfvgimqplvnn*kvtlyi*plqmvvphlqplvnkmvlvillqcmi
llfhnivlvefgli*mvmvfkmlvnlvfqesqys*smvnnqlqqvklypiqmvisnlkli
svqiiiv*fllhssklvlplq*emliqliqiqivmlsyqllimfmsllllllmlvviilm
vvhwyyskkik**kni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS133 (CHS133Q) /CSM/CH/CHS1-B/CHS133Q.Seq.d/                       1546   0.0
SHG801 (SHG801Q) /CSM/SH/SHG8-A/SHG801Q.Seq.d/                       1532   0.0
SHA464 (SHA464Q) /CSM/SH/SHA4-C/SHA464Q.Seq.d/                       1445   0.0
SHD463 (SHD463Q) /CSM/SH/SHD4-C/SHD463Q.Seq.d/                       1443   0.0
SHK649 (SHK649Q) /CSM/SH/SHK6-C/SHK649Q.Seq.d/                       1439   0.0
AHD511 (AHD511Q) /CSM/AH/AHD5-A/AHD511Q.Seq.d/                       1439   0.0
AHQ295 (AHQ295Q) /CSM/AH/AHQ2-D/AHQ295Q.Seq.d/                       1437   0.0
SHA359 (SHA359Q) /CSM/SH/SHA3-C/SHA359Q.Seq.d/                       1435   0.0
SHK826 (SHK826Q) /CSM/SH/SHK8-B/SHK826Q.Seq.d/                       1431   0.0
SHK601 (SHK601Q) /CSM/SH/SHK6-A/SHK601Q.Seq.d/                       1429   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BQ022375|BQ022375.1 UI-1-BB1p-akh-h-10-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA cloneUI-1-BB1p-akh-h-10-0-UI 3', mRNA sequence.    48   0.52   1
AC150654|AC150654.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06, complete sequence.    36   1.0    2
AC114012|AC114012.5 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0079H11, complete sequence.    36   1.1    2
AC105770|AC105770.2 Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence.    36   1.1    2
BX276095|BX276095.7 Zebrafish DNA sequence from clone CH211-225H17.    40   1.9    2
CV912682|CV912682.1 PF007G3 sporangia, cleaving Phytophthora infestans cDNA, mRNA sequence.    46   2.1    1
AC099203|AC099203.4 Rattus norvegicus clone CH230-126K21, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.    46   2.1    1
AC099201|AC099201.6 Rattus norvegicus clone CH230-123L16, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46   2.1    1
AC005213|AC005213.1 Homo sapiens chromosome 5, BAC clone 84E9 (LBNL H120), complete sequence.    46   2.1    1
AC005188|AC005188.1 Homo sapiens PAC clone RP1-17P5 from 5q31, complete sequence.    46   2.1    1
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000686_3542(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    82   5e-14
CP000909_404(CP000909|pid:none) Chloroflexus aurantiacus J-10-fl...    61   9e-08
CP000910_1528(CP000910|pid:none) Renibacterium salmoninarum ATCC...    57   2e-06
CP001337_3037(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    57   2e-06
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei...    53   2e-05
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD...    53   2e-05
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur...    53   2e-05
protein update 2009. 4.13
PSORT 

 psg: 0.79  gvh: 0.51  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for CHS133 is nuc
5' end seq. ID CHS133F
5' end seq. 
>CHS133F.Seq
ATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATT
ATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACA
AGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAA
TGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGC
AACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTAT
ATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTA
TTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCC
AACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAA
CATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAAT
TAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAAC
CACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTAT
TTACCGATATCAATGGTAATGGAATTTTTGATGGNNNNNNNNNN
Length of 5' end seq. 704
3' end seq. ID CHS133Z
3' end seq. 
>CHS133Z.Seq
NNNNNNNNNNCTATTTGGAGAGTGGAGGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTG
ATCAAAAATCACTCACTGGTCTTAGATATGGTCCAGGTAATGGTAATTTCTTTGATAATC
ATAAAACAGGTCTTCATGACTATACCAATGCTTTTGGTGCAACTAAAGGTGGTCGTGATA
TTATTGTTACAACTGGTTTCGATTACTATGAAGCATTTGAAGGTTCAATTCGTTGGTATA
ATGCAACCTCTGGTAAACAACTAAAAGGTTACTCTTTATATATAACCTCTTCAAATGGTC
GTACCCCATCTCCAACCTTTGGTAAACAAAATGGTCTTGGTGATATTACTTCAGTGTATG
ATTCTTCTCTTCCACAATATCGTGTTGGTAGAGTTTGGCTTGATATAAATGGTAATGGTA
TTCAAGATGCTGGTGAACCTGGTATTTCAGGAATCACAGTATTCTTAATCTATGGTCAAC
AATCAACTCCAACAAGTCAAACTGTATCCGATTCAAATGGTTATTTCAAATTTGAAGTTG
ATTTCAGTTCAAATCATTATTGTGTAATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCA
TTACAATGAGAAATGCTGATCCAACTCATCCAAATACAAATAGTGATGCTTTCTTATCAA
CTGTTGATAATGTTTATGTCACTTCTTTTACTTCTTCTGATGCTGGTGGTTATTATTTTA
ATGGTTGTTCATTGGTATTATTCCAAAAAAATAAAATAATAAAAAAATATAAA
Length of 3' end seq. 773
Connected seq. ID CHS133P
Connected seq. 
>CHS133P.Seq
ATTTTTAAATATATATATTAATATATATTAATATATTAATATTAATAAAATGAAAATATT
ATATTCATTATTATTAATATCAAGTATAATTTTAAATACTGTATTAAATATTTCATCACA
AGTATATGATCAACGTATTTTGGCATTAAAAGGAAAATGTTATTTAGATTCAAATAAAAA
TGCATTGTATGATGAAGGTGAACCAGGATTTGGAAATGTTGAAATTTCTTTAGGAAATGC
AACTGATTATAAGGGAAATAAATATCCAATACGTTATTCATCTGCTGATGGTACATTTAT
ATATGATGGATTAACTCAACGTACAACTTATGAATTTACATTTACCAATCCAAAAGATTA
TTACTTTGAAACCTATGAAAAGACATTGGCTTGTCCACCAGGTGTACCATGTATTCGTCC
AACGGTTTCAGCTGATAATTTGGCAGCAGATCTTTTAGTTGCAAATACCTTTGCCTATAA
CATTCCATTGATTAAACAAGTTGGTGTTTCATCAGGCTCATCTATACTTACAGTTAGAAT
TAGTGTTGATTTGGGGTTATGTTGAGCAAACTCAACCACCAACTCAACCACCTACTCAAC
CACCTACTCAACCACCAACACCTCCACCATTTACTGGTAGTGCCGTCGCTGGTTTATTAT
TTACCGATATCAATGGTAATGGAATTTTTGATGG----------CTATTTGGAGAGTGGA
GGTAAATGTGGTAGTCTTGTTGGTGCCGGAGTTGATCAAAAATCACTCACTGGTCTTAGA
TATGGTCCAGGTAATGGTAATTTCTTTGATAATCATAAAACAGGTCTTCATGACTATACC
AATGCTTTTGGTGCAACTAAAGGTGGTCGTGATATTATTGTTACAACTGGTTTCGATTAC
TATGAAGCATTTGAAGGTTCAATTCGTTGGTATAATGCAACCTCTGGTAAACAACTAAAA
GGTTACTCTTTATATATAACCTCTTCAAATGGTCGTACCCCATCTCCAACCTTTGGTAAA
CAAAATGGTCTTGGTGATATTACTTCAGTGTATGATTCTTCTCTTCCACAATATCGTGTT
GGTAGAGTTTGGCTTGATATAAATGGTAATGGTATTCAAGATGCTGGTGAACCTGGTATT
TCAGGAATCACAGTATTCTTAATCTATGGTCAACAATCAACTCCAACAAGTCAAACTGTA
TCCGATTCAAATGGTTATTTCAAATTTGAAGTTGATTTCAGTTCAAATCATTATTGTGTA
ATTCCTGTTGCATTCTTCCAAGCTGGTTCTTCCATTACAATGAGAAATGCTGATCCAACT
CATCCAAATACAAATAGTGATGCTTTCTTATCAACTGTTGATAATGTTTATGTCACTTCT
TTTACTTCTTCTGATGCTGGTGGTTATTATTTTAATGGTTGTTCATTGGTATTATTCCAA
AAAAATAAAATAATAAAAAAATATAAA
Length of connected seq. 1457
Full length Seq ID -
Full length Seq. -
Length of full length seq. -