>CHS132 (CHS132Q) /CSM/CH/CHS1-B/CHS132Q.Seq.d/
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAAXXXXXXXXX
XTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTG
AATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCT
GCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACC
AATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGAT
ATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGAT
GCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAA
GAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAA
CAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAA
GTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAAC
GATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCT
AAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCT
GACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAA
GATAAATTAAATCAAGAAAAAAATCANCAATTATTAGAACAAGAACAAAATCAAAAATAA
TTTAATCATTACTTTCTTTTTAAAAAA

iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNE
ITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQE
QQDKLNQEKNXQLLEQEQNQK*fnhyflfkk

Frame A:
k**iyyqitifsflsf*slnnrnnkn*y*kkgtlkkk---

---fkklkmlqrdymkkfiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkim
klpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkr
mkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfn
krtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksk
nnkin*ikkkixny*nknkiknnliitfflk

Frame B:
nnkftik*lfflfflfkv*iieiikinikkker*kk---

---srs*rcsreti*rns*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**
nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re
*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknst
rercclle*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnpr
ttr*iksrkksxiirtrtkskii*sllsf*k

Frame C:
iinllsnnyfffsfflkfk**k**KLILKKRNVKKK---

---QEVEDAPERLYEEIHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNE
ITNEQDAIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEEN
EEEQFSNKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQ
ENDAVYLSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQE
QQDKLNQEKNXQLLEQEQNQK*fnhyflfkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL647 (SHL647Q) /CSM/SH/SHL6-B/SHL647Q.Seq.d/                        805   0.0
SHJ524 (SHJ524Q) /CSM/SH/SHJ5-A/SHJ524Q.Seq.d/                        805   0.0
SHG406 (SHG406Q) /CSM/SH/SHG4-A/SHG406Q.Seq.d/                        805   0.0
SHG232 (SHG232Q) /CSM/SH/SHG2-B/SHG232Q.Seq.d/                        805   0.0
SHD878 (SHD878Q) /CSM/SH/SHD8-D/SHD878Q.Seq.d/                        805   0.0
SHD613 (SHD613Q) /CSM/SH/SHD6-A/SHD613Q.Seq.d/                        805   0.0
SHD492 (SHD492Q) /CSM/SH/SHD4-D/SHD492Q.Seq.d/                        805   0.0
SHD338 (SHD338Q) /CSM/SH/SHD3-B/SHD338Q.Seq.d/                        805   0.0
SHD269 (SHD269Q) /CSM/SH/SHD2-C/SHD269Q.Seq.d/                        805   0.0
SHD221 (SHD221Q) /CSM/SH/SHD2-A/SHD221Q.Seq.d/                        805   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   805   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   4e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   2e-04  9
AX344564|AX344564.1 Sequence 15 from Patent WO0200932.             36   0.002  12
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.004  14
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36   0.004  11
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.006  7
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.013  15
AC163760|AC163760.1 Pan troglodytes chromosome UNKNOWN clone CH251-180O13, *** SEQUENCING IN PROGRESS ***, 28 unordered pieces.    38   0.014  2
AX344618|AX344618.1 Sequence 43 from Patent WO0200927.             42   0.018  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   308   2e-82
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    39   0.24
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    39   0.24
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    38   0.40
AM910996_565(AM910996|pid:none) Plasmodium knowlesi strain H chr...    38   0.52
(Q54DK4) RecName: Full=Alpha-protein kinase 1;          Short=AK...    38   0.52
(Q55GK0) RecName: Full=GATA zinc finger domain-containing protei...    37   0.69
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    37   0.89
AL035475_17(AL035475|pid:none) Plasmodium falciparum MAL4P2.  &A...    37   1.2
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   1.5

 psg: 0.40  gvh: 0.17  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CHS132 is nuc

>CHS132F.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAANNNNNNNNN
N

>CHS132Z.Seq
NNNNNNNNNNTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAAT
TCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAAT
GGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAAT
GAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAAT
GGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAAT
GAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAG
AATGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAA
CAACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAA
CAACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAA
CAAGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCT
GAATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAA
CAATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAA
GAACAACAAGATAAATTAAATCAAGAAAAAAATCANCAATTATTAGAACAAGAACAAAAT
CAAAAATAATTTAATCATTACTTTCTTTTTAAAAAA

>CHS132P.Seq
AAATAATAAATTTACTATCAAATAACTATTTTTTCTTTTCTTTCTTTTTAAAGTTTAAAT
AATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAAAA---------
-TTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTCCAATTTG
AATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCT
GCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACC
AATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGAT
ATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGAT
GCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAA
GAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAA
CAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAA
GTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAAC
GATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCT
AAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCT
GACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAA
GATAAATTAAATCAAGAAAAAAATCANCAATTATTAGAACAAGAACAAAATCAAAAATAA
TTTAATCATTACTTTCTTTTTAAAAAA