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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS130
Library CH
(Link to library)
Clone ID CHS130
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15941-1
Original site URL
Representative seq. ID CHS130P
(Link to Original site)
Representative DNA sequence 
>CHS130 (CHS130Q) /CSM/CH/CHS1-B/CHS130Q.Seq.d/
ATTTATAAAATATATTTTTATATACTCCTTTCATGTATTAAAGTAATAAAATTATATATT
TAATAAATTAAATTTTTAAAAAAAAAATGGATGGAGTACAAGGAAAATTATTTGTGACTG
TTATTCAAGCACAAAATTTGAATATTACTCAAGATAAAAAATCAGCAGCAGAAGAAATTG
TAGGTGCAATATTTGATCCATTTTCATCACCAATTCTTCAATCAATTGAAAAGATTCAAA
ATTTTTCAAAATCAAATGTGTTACCAATTTTTACACCAATTAGTGGTATTATAGATACAA
TTGCAACGGTTGGTAAAGATACGACAACAACAGCAGTAGCAGAGAAAGGACCAGAGATTC
CATCAGAAAATCAAACAGCAGAGAGTACAGGTATAGTTTGTACAGTTACAACTGAAGAAC
AAAAATTTAAAACAGTAACTTCACCAGATGTAACCGAACCAAAATGGAGTAATCAATCAC
ATTCTTTTAATATCGCACATCCATGTGCAGAATTAACATTTGAAGTATCATTAAACAATG
GTGAAAAAGAATCATTTTTAATAGGXXXXXXXXXXAAATTTCAATTACAAACCAAGGATC
GTACATTCAATTTCAAAGTGGTAGATGATCCAAAGGCTTACGATAAATGGATCATTAGTT
TAGGTAAAATGGCCGAGGTTAATAAAATCACACTTCCACTCATTGATTCGGTTAAATCAC
AAATCGTTTGGAAGAATGTTTTCAATAAGAAAGAGAAAACCACCTTTATGTTACCAGATG
TTGTGTTATTGCCTGAACAAATCTTTGTTGAATCTGGTCGTTTCGCATTCGCAATTGGTG
ATAAAATTAAATCAAAACTCACTTCCATTAGTTTACAAGATGCTACAATGACTGGTTTCC
TCTATAAAATGGGTCAATTAAATAAAGAATGGAAAAAGAGATTCTTTTTCATTCAAGGTA
CAAATCTTTATTACGCAACTTTAAAAGAGTCTGACTTTGAAAAGGGTACTATCGATTCAG
TGACACCAACTGGTAGTATGCCTCTTGAGAGATGTCGTATCGATCAATCTCCTCATAGTA
CTAATAAAACTAATAGTTTCGAAGTTATTAGTGCTTTTCGTAGAAATATCCTCCTGGCAA
CTGATAAAGCTGATGATAAAGATAAATGGATTAAAGCTATCGCCATTGCATCTGGTATGC
AAATAGTTGAAGAGAAAGAATCAAATGAAGAAAAGAAAAGTTTACCAAGTTCTGAAGCAT
TACTTAATTCAAGAATAAGAGTAAAATCATTAAGAGCTCCACCAGTTGTCGTTGTACAAC
AACAAAAACAAAAGAAATTAGAGATAAGNATAAATAATAATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
l*niflytpfmy*snkiiylin*IFKKKMDGVQGKLFVTVIQAQNLNITQDKKSAAEEIV
GAIFDPFSSPILQSIEKIQNFSKSNVLPIFTPISGIIDTIATVGKDTTTTAVAEKGPEIP
SENQTAESTGIVCTVTTEEQKFKTVTSPDVTEPKWSNQSHSFNIAHPCAELTFEVSLNNG
EKESFLI---

---KFQLQTKDRTFNFKVVDDPKAYDKWIISLGKMAEVNKITLPLIDSVKSQIVWKNVFN
KKEKTTFMLPDVVLLPEQIFVESGRFAFAIGDKIKSKLTSISLQDATMTGFLYKMGQLNK
EWKKRFFFIQGTNLYYATLKESDFEKGTIDSVTPTGSMPLERCRIDQSPHSTNKTNSFEV
ISAFRRNILLATDKADDKDKWIKAIAIASGMQIVEEKESNEEKKSLPSSEALLNSRIRVK
SLRAPPVVVVQQQKQKKLEIXINNN
Translated Amino Acid sequence (All Frames) 
Frame A:
iykiyfyillscikviklyi**ikflkkkwmeykenyl*llfkhki*illkiknqqqkkl
*vqylihfhhqffnqlkrfkifqnqmcyqflhqlvvl*iqlqrlvkirqqqq*qrkdqrf
hqkikqqrvqv*fvqlqlknknlkq*lhqm*pnqngvinhillishihvqn*hlkyh*tm
vkknhf**---

---KFQLQTKDRTFNFKVVDDPKAYDKWIISLGKMAEVNKITLPLIDSVKSQIVWKNVFN
KKEKTTFMLPDVVLLPEQIFVESGRFAFAIGDKIKSKLTSISLQDATMTGFLYKMGQLNK
EWKKRFFFIQGTNLYYATLKESDFEKGTIDSVTPTGSMPLERCRIDQSPHSTNKTNSFEV
ISAFRRNILLATDKADDKDKWIKAIAIASGMQIVEEKESNEEKKSLPSSEALLNSRIRVK
SLRAPPVVVVQQQKQKKLEIXINNN

Frame B:
fikyifiysfhvlk**nyifnklnf*kkngwstrkiicdcysstkfeyysr*kissrrnc
rcni*sifitnssin*kdskffkikcvtnfytn*wyyryncngw*rydnnsssrertrds
irksnsreyryslysyn*rtki*nsnftrcnrtkme*sitff*yrtsmcrini*siikqw
*kriifnr---

---nfnykprivhsiskw*miqrltingslv*vkwprlikshfhslirlnhksfgrmfsi
rkrkpplcyqmlcyclnksllnlvvshsqlviklnqnslplvykmlq*lvssikwvn*ik
ngkrdsfsfkvqifitql*ksltlkrvlsiq*hqlvvcllrdvvsinllivliklivskl
lvlfveisswqliklmikinglklsplhlvck*lkrknqmkkrkvyqvlkhyliqe*e*n
h*elhqlslynnknkrn*r*x*iii

Frame C:
l*niflytpfmy*snkiiylin*IFKKKMDGVQGKLFVTVIQAQNLNITQDKKSAAEEIV
GAIFDPFSSPILQSIEKIQNFSKSNVLPIFTPISGIIDTIATVGKDTTTTAVAEKGPEIP
SENQTAESTGIVCTVTTEEQKFKTVTSPDVTEPKWSNQSHSFNIAHPCAELTFEVSLNNG
EKESFLI---

---isitnqgsyiqfqsgr*skglr*mdh*fr*ngrg**nhtsth*fg*itnrleecfq*
erenhlyvtrccvia*tnlc*iwsfrirnw**n*ikthfh*ftrcyndwfpl*ngsik*r
mekeilfhsryksllrnfkrv*l*kgyyrfsdtnw*yas*emsyrsiss*y**n**frsy
*cfs*kyppgn**s***r*md*syrhciwyans*rerik*rkekftkf*sit*fknkski
iksstscrctttktkeirdkxk***
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS130 (CHS130Q) /CSM/CH/CHS1-B/CHS130Q.Seq.d/                       2577   0.0
VFF831 (VFF831Q) /CSM/VF/VFF8-B/VFF831Q.Seq.d/                       1106   0.0
VHL812 (VHL812Q) /CSM/VH/VHL8-A/VHL812Q.Seq.d/                       1076   0.0
VHP596 (VHP596Q) /CSM/VH/VHP5-D/VHP596Q.Seq.d/                       1033   0.0
FC-BQ06 (FC-BQ06Q) /CSM/FC/FC-BQ/FC-BQ06Q.Seq.d/                      115   2e-24
VHP546 (VHP546Q) /CSM/VH/VHP5-B/VHP546Q.Seq.d/                         42   0.022
VHN804 (VHN804Q) /CSM/VH/VHN8-A/VHN804Q.Seq.d/                         42   0.022
VHN334 (VHN334Q) /CSM/VH/VHN3-B/VHN334Q.Seq.d/                         42   0.022
VHI728 (VHI728Q) /CSM/VH/VHI7-B/VHI728Q.Seq.d/                         42   0.022
VHG448 (VHG448Q) /CSM/VH/VHG4-B/VHG448Q.Seq.d/                         42   0.022
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY392438|AY392438.1 Dictyostelium discoideum tenascin X gene, complete cds.    82   8e-20  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   2e-05  14
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   0.003  11
AC090322|AC090322.2 Homo sapiens chromosome 18 clone RP11-673D22 map 18, WORKING DRAFT SEQUENCE, 17 unordered pieces.    38   0.005  2
AC012289|AC012289.12 Homo sapiens chromosome 18, clone RP11-7E6, complete sequence.    38   0.005  2
AC125438|AC125438.2 Homo sapiens chromosome 18 clone CTD-2361A19 map 18, WORKING DRAFT SEQUENCE, 3 ordered pieces.    38   0.005  2
AC136753|AC136753.2 Homo sapiens chromosome 18 clone CTD-2361A19 map 18, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38   0.005  2
BM465194|BM465194.1 AGENCOURT_6427943 NIH_MGC_67 Homo sapiens cDNA clone IMAGE:5501949 5', mRNA sequence.    38   0.007  2
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    32   0.012  14
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    36   0.012  11
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR847826_1(CR847826|pid:none) Zebrafish DNA sequence from clone ...    45   0.006
AF277804_1(AF277804|pid:none) Dictyostelium discoideum PakC mRNA...    43   0.029
BX470224_4(BX470224|pid:none) Zebrafish DNA sequence from clone ...    43   0.029
(P38041) RecName: Full=Protein BOB1; AltName: Full=BEM1-binding ...    42   0.037
AY241695_1(AY241695|pid:none) Mus musculus IRF4-binding protein ...    42   0.049
(Q55GV3) RecName: Full=Serine/threonine-protein kinase pakC;    ...    41   0.083
AL929161_1(AL929161|pid:none) Zebrafish DNA sequence from clone ...    40   0.14
AB005237_11(AB005237|pid:none) Arabidopsis thaliana genomic DNA,...    40   0.24
AE014134_3647(AE014134|pid:none) Drosophila melanogaster chromos...    39   0.41
AE014134_3648(AE014134|pid:none) Drosophila melanogaster chromos...    39   0.41
protein update 2009. 4.13
PSORT 

 psg: 0.76  gvh: 0.54  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for CHS130 is cyt
5' end seq. ID CHS130F
5' end seq. 
>CHS130F.Seq
ATTTATAAAATATATTTTTATATACTCCTTTCATGTATTAAAGTAATAAAATTATATATT
TAATAAATTAAATTTTTAAAAAAAAAATGGATGGAGTACAAGGAAAATTATTTGTGACTG
TTATTCAAGCACAAAATTTGAATATTACTCAAGATAAAAAATCAGCAGCAGAAGAAATTG
TAGGTGCAATATTTGATCCATTTTCATCACCAATTCTTCAATCAATTGAAAAGATTCAAA
ATTTTTCAAAATCAAATGTGTTACCAATTTTTACACCAATTAGTGGTATTATAGATACAA
TTGCAACGGTTGGTAAAGATACGACAACAACAGCAGTAGCAGAGAAAGGACCAGAGATTC
CATCAGAAAATCAAACAGCAGAGAGTACAGGTATAGTTTGTACAGTTACAACTGAAGAAC
AAAAATTTAAAACAGTAACTTCACCAGATGTAACCGAACCAAAATGGAGTAATCAATCAC
ATTCTTTTAATATCGCACATCCATGTGCAGAATTAACATTTGAAGTATCATTAAACAATG
GTGAAAAAGAATCATTTTTAATAGGNNNNNNNNNN
Length of 5' end seq. 575
3' end seq. ID CHS130Z
3' end seq. 
>CHS130Z.Seq
NNNNNNNNNNAAATTTCAATTACAAACCAAGGATCGTACATTCAATTTCAAAGTGGTAGA
TGATCCAAAGGCTTACGATAAATGGATCATTAGTTTAGGTAAAATGGCCGAGGTTAATAA
AATCACACTTCCACTCATTGATTCGGTTAAATCACAAATCGTTTGGAAGAATGTTTTCAA
TAAGAAAGAGAAAACCACCTTTATGTTACCAGATGTTGTGTTATTGCCTGAACAAATCTT
TGTTGAATCTGGTCGTTTCGCATTCGCAATTGGTGATAAAATTAAATCAAAACTCACTTC
CATTAGTTTACAAGATGCTACAATGACTGGTTTCCTCTATAAAATGGGTCAATTAAATAA
AGAATGGAAAAAGAGATTCTTTTTCATTCAAGGTACAAATCTTTATTACGCAACTTTAAA
AGAGTCTGACTTTGAAAAGGGTACTATCGATTCAGTGACACCAACTGGTAGTATGCCTCT
TGAGAGATGTCGTATCGATCAATCTCCTCATAGTACTAATAAAACTAATAGTTTCGAAGT
TATTAGTGCTTTTCGTAGAAATATCCTCCTGGCAACTGATAAAGCTGATGATAAAGATAA
ATGGATTAAAGCTATCGCCATTGCATCTGGTATGCAAATAGTTGAAGAGAAAGAATCAAA
TGAAGAAAAGAAAAGTTTACCAAGTTCTGAAGCATTACTTAATTCAAGAATAAGAGTAAA
ATCATTAAGAGCTCCACCAGTTGTCGTTGTACAACAACAAAAACAAAAGAAATTAGAGAT
AAGNATAAATAATAATAA
Length of 3' end seq. 798
Connected seq. ID CHS130P
Connected seq. 
>CHS130P.Seq
ATTTATAAAATATATTTTTATATACTCCTTTCATGTATTAAAGTAATAAAATTATATATT
TAATAAATTAAATTTTTAAAAAAAAAATGGATGGAGTACAAGGAAAATTATTTGTGACTG
TTATTCAAGCACAAAATTTGAATATTACTCAAGATAAAAAATCAGCAGCAGAAGAAATTG
TAGGTGCAATATTTGATCCATTTTCATCACCAATTCTTCAATCAATTGAAAAGATTCAAA
ATTTTTCAAAATCAAATGTGTTACCAATTTTTACACCAATTAGTGGTATTATAGATACAA
TTGCAACGGTTGGTAAAGATACGACAACAACAGCAGTAGCAGAGAAAGGACCAGAGATTC
CATCAGAAAATCAAACAGCAGAGAGTACAGGTATAGTTTGTACAGTTACAACTGAAGAAC
AAAAATTTAAAACAGTAACTTCACCAGATGTAACCGAACCAAAATGGAGTAATCAATCAC
ATTCTTTTAATATCGCACATCCATGTGCAGAATTAACATTTGAAGTATCATTAAACAATG
GTGAAAAAGAATCATTTTTAATAGG----------AAATTTCAATTACAAACCAAGGATC
GTACATTCAATTTCAAAGTGGTAGATGATCCAAAGGCTTACGATAAATGGATCATTAGTT
TAGGTAAAATGGCCGAGGTTAATAAAATCACACTTCCACTCATTGATTCGGTTAAATCAC
AAATCGTTTGGAAGAATGTTTTCAATAAGAAAGAGAAAACCACCTTTATGTTACCAGATG
TTGTGTTATTGCCTGAACAAATCTTTGTTGAATCTGGTCGTTTCGCATTCGCAATTGGTG
ATAAAATTAAATCAAAACTCACTTCCATTAGTTTACAAGATGCTACAATGACTGGTTTCC
TCTATAAAATGGGTCAATTAAATAAAGAATGGAAAAAGAGATTCTTTTTCATTCAAGGTA
CAAATCTTTATTACGCAACTTTAAAAGAGTCTGACTTTGAAAAGGGTACTATCGATTCAG
TGACACCAACTGGTAGTATGCCTCTTGAGAGATGTCGTATCGATCAATCTCCTCATAGTA
CTAATAAAACTAATAGTTTCGAAGTTATTAGTGCTTTTCGTAGAAATATCCTCCTGGCAA
CTGATAAAGCTGATGATAAAGATAAATGGATTAAAGCTATCGCCATTGCATCTGGTATGC
AAATAGTTGAAGAGAAAGAATCAAATGAAGAAAAGAAAAGTTTACCAAGTTCTGAAGCAT
TACTTAATTCAAGAATAAGAGTAAAATCATTAAGAGCTCCACCAGTTGTCGTTGTACAAC
AACAAAAACAAAAGAAATTAGAGATAAGNATAAATAATAATAA
Length of connected seq. 1353
Full length Seq ID -
Full length Seq. -
Length of full length seq. -