NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS122
Library CH
(Link to library)
Clone ID CHS122
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11458-1
Original site URL
Representative seq. ID CHS122P
(Link to Original site)
Representative DNA sequence 
>CHS122 (CHS122Q) /CSM/CH/CHS1-A/CHS122Q.Seq.d/
GAAAAAAAGATTAAAATAAACAATAAAAAATAGTTTTATATATGTATATATATTACTATT
AAAAAAAGAAACAAAAAAATAGAAACCAAAAAATAATGACAAATAAAAGGAATAATAAAT
ATCAATCTATAAATAATAATGATGATGAAGAAGATGATGATTTTATAAAATCAAGAGATT
ATAATAATAATAATAATAATAATAATAATAATAATGTAAAAATAAATAAAAGTAATGGTA
GTAGTAGTAGTAGCGATAGTTTTGATGAATTTATAGAAAATTCAGAAGAACAAACATTTT
TAAAAAATAAAGATAATTATGATGACAATGGTAAAATTAAGAAGAAAATATCAAGTAAAC
CTTATGGTAAATTCAAGGGTATATCAAATGCAATAAATGGTGATACAGTAAAAGTGAAGA
TAGTGAATTGGTTTAGAACATTACTCTACCATTGGAAACATTTCTTTTCACATACATTAA
GAATCAATCTACGTAATAAGTTATCCTATTTGTTAGGATTTTCCGCATGCTTCTTGGTAG
TGTTTATAGTGTCACTATGTGTTTCCATCATCACCAACACACCAGTGGTATTCCTAAGTT
TGTCAGAAGCAAGTGTTGGTGAAATGGATATGGTGTTGACACCTGGTTCATGGXXXXXXX
XXXAAGATAATCATTGGTTCATTGTATACCGATGTTATTGGTGCTTCAATTGATCAATCA
TTCCTATTACAATTAAATATTAAATCTGGTGAAGCTTCATCAGTTAATTCCACTAGACAC
TTAGTTAAACCATCGGCAATGTTAGATAGCGCACCATCTTTTAAATTCTCTAAATTCCCA
TCAGTTACAAATCAAGATTCAATCGTATCATTTCCAACTTATCTCTCGTATGCAAGTAGT
ATCTTCTCATCAGTACGTGAAATTCCAATGAATCAAGTGATTTTGAAATTGAATACTGAT
GATAAAGATGCTGTAGAATCAATAAAGAATCGTTTAAATAGCTTTTTAATTGGTAATCTT
AGAGAGGATTTCGATATGTTGGATTACTATGAAAAGATTAAACCTTTTGCAACGGCCTCT
GTGATCATTCAATACTTTTTCAGTTTTACTACAGTTTTAGCAATGACCATCTCTTTCTTC
TCTTTAATGTCTTCTGTATATTCAAATATTTTAGAACAAACTAAAGAAATTGGTGTTTTA
TGTGCATTGGGAATACCAAAATCTTGGATGATTAGAATTTACGTCTATGAAGCTTTCGTA
TTGGTTATGGCTTCCTCAATGTTGGGTATGTTTATTGGTTCAACTGTTGGTTTCACAATG
ATCCTTCAAAGACAATTATTTACAATGTTACCAATTCCAATGACTTTACCTTGGCAATTA
ATTATAATAGTTTTCATTTGTTCAATGTTTTTCTCTTTCTTTTCAGCTTTGGACCAATTA
GAAAAGTACTAATCAACCCGTTGTTAGTATAA
sequence update 2002.10.25
Translated Amino Acid sequence 
kkd*nkq*kivlymyiyyy*KKKQKNRNQKIMTNKRNNKYQSINNNDDEEDDDFIKSRDY
NNNNNNNNNNNVKINKSNGSSSSSDSFDEFIENSEEQTFLKNKDNYDDNGKIKKKISSKP
YGKFKGISNAINGDTVKVKIVNWFRTLLYHWKHFFSHTLRINLRNKLSYLLGFSACFLVV
FIVSLCVSIITNTPVVFLSLSEASVGEMDMVLTPGSW---

---KIIIGSLYTDVIGASIDQSFLLQLNIKSGEASSVNSTRHLVKPSAMLDSAPSFKFSK
FPSVTNQDSIVSFPTYLSYASSIFSSVREIPMNQVILKLNTDDKDAVESIKNRLNSFLIG
NLREDFDMLDYYEKIKPFATASVIIQYFFSFTTVLAMTISFFSLMSSVYSNILEQTKEIG
VLCALGIPKSWMIRIYVYEAFVLVMASSMLGMFIGSTVGFTMILQRQLFTMLPIPMTLPW
QLIIIVFICSMFFSFFSALDQLEKY*strc*y
Translated Amino Acid sequence (All Frames) 
Frame A:
ekkikinnkk*fyiciyitikkrnkkietkk**qikgiininl*iimmmkkmmil*nqei
iiiiiiiiiiim*k*ikvmvvvvvaivlmnl*kiqknkhf*kikiimmtmvklrrkyqvn
lmvnsrvyqmq*mviq*k*r**iglehystignisfhih*esiyvisypic*dfphasw*
cl*chyvfpsspthqwys*vcqkqvlvkwiwc*hlvh---

---KIIIGSLYTDVIGASIDQSFLLQLNIKSGEASSVNSTRHLVKPSAMLDSAPSFKFSK
FPSVTNQDSIVSFPTYLSYASSIFSSVREIPMNQVILKLNTDDKDAVESIKNRLNSFLIG
NLREDFDMLDYYEKIKPFATASVIIQYFFSFTTVLAMTISFFSLMSSVYSNILEQTKEIG
VLCALGIPKSWMIRIYVYEAFVLVMASSMLGMFIGSTVGFTMILQRQLFTMLPIPMTLPW
QLIIIVFICSMFFSFFSALDQLEKY*strc*y

Frame B:
kkrlk*tiknsfiyvyilllkketkk*kpknndk*ke**isiyk*****rr**fykikrl
***********cknk*k*w*****r*f**iyrkfrrtnifkk*r*l**qw*n*eenik*t
lw*iqgyikcnkw*ysksedselv*nitlpletflftyiknqst**vilfvrifrmllgs
vysvtmcfhhhqhtsgipkfvrskcw*ngygvdtwfm---

---r*slvhcipmllvlqlinhsyyn*ilnlvklhqlipldt*lnhrqc*iahhllnsln
shqlqikiqsyhfqlisrmqvvsshqyvkfq*ik*f*n*ilmikml*nq*riv*iaf*lv
ilerisicwitmkrlnllqrpl*sfntfsvllqf*q*pslssl*cllyiqif*nklkklv
fyvhweyqnlg*leftsmklsywlwlpqcwvcllvqllvsq*sfkdnylqcyqfq*lylg
n*l**fsfvqcfslsfqlwtn*kstnqpvvsi

Frame C:
kkd*nkq*kivlymyiyyy*KKKQKNRNQKIMTNKRNNKYQSINNNDDEEDDDFIKSRDY
NNNNNNNNNNNVKINKSNGSSSSSDSFDEFIENSEEQTFLKNKDNYDDNGKIKKKISSKP
YGKFKGISNAINGDTVKVKIVNWFRTLLYHWKHFFSHTLRINLRNKLSYLLGFSACFLVV
FIVSLCVSIITNTPVVFLSLSEASVGEMDMVLTPGSW---

---dnhwfivyrcywcfn*siipitiky*iw*sfis*fh*tls*tignvr*rtif*il*i
pisyksrfnriisnlslvck*yllist*nsnessdfeiey***rccrinkesfk*lfnw*
s*rgfryvgll*kd*tfcnglcdhsilfqfyysfsndhlfllfnvfcifkyfrtn*rnwc
fmcigntkildd*nlrl*sfrigygflnvgyvywfncwfhndpsktiiynvtnsndftla
inynsfhlfnvflflfsfgpirkvlinpllv*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS122 (CHS122Q) /CSM/CH/CHS1-A/CHS122Q.Seq.d/                       2391   0.0
SSG440 (SSG440Q) /CSM/SS/SSG4-B/SSG440Q.Seq.d/                       1503   0.0
VHQ341 (VHQ341Q) /CSM/VH/VHQ3-B/VHQ341Q.Seq.d/                       1400   0.0
SHF215 (SHF215Q) /CSM/SH/SHF2-A/SHF215Q.Seq.d/                       1251   0.0
AHL653 (AHL653Q) /CSM/AH/AHL6-C/AHL653Q.Seq.d/                       1243   0.0
AHP863 (AHP863Q) /CSM/AH/AHP8-C/AHP863Q.Seq.d/                       1138   0.0
SHH224 (SHH224Q) /CSM/SH/SHH2-A/SHH224Q.Seq.d/                       1130   0.0
AHN177 (AHN177Q) /CSM/AH/AHN1-D/AHN177Q.Seq.d/                       1049   0.0
CHP271 (CHP271Q) /CSM/CH/CHP2-C/CHP271Q.Seq.d/                        729   0.0
VSG102 (VSG102Q) /CSM/VS/VSG1-A/VSG102Q.Seq.d/                         46   0.002
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           48   8e-05  13
AC095795|AC095795.7 Rattus norvegicus clone CH230-9F18, *** SEQUENCING IN PROGRESS ***, 22 ordered pieces.    60   1e-04  1
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    56   0.002  1
AL031749|AL031749.7 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL1P6.    42   0.004  4
AY569336|AY569336.1 Candida albicans BNI4 (BNI4) gene, complete cds.    52   0.007  3
CR293530|CR293530.22 Zebrafish DNA sequence from clone CH211-129C13 in linkage group 1.    54   0.008  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   0.014  15
AC007491|AC007491.7 Homo sapiens chromosome 16 clone RP11-182C10, complete sequence.    52   0.021  4
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    52   0.024  9
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12 section 4 of 9 of the complete sequence.    42   0.028  13
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_66(AC116956|pid:none) Dictyostelium discoideum chromoso...    87   1e-15
AM502241_48(AM502241|pid:none) Leishmania infantum chromosome 23.      79   4e-13
CT005262_48(CT005262|pid:none) Leishmania major strain Friedlin,...    74   2e-11
CP000937_337(CP000937|pid:none) Francisella philomiragia subsp. ...    67   2e-09
CP000915_443(CP000915|pid:none) Francisella tularensis subsp. me...    66   3e-09
AM233362_474(AM233362|pid:none) Francisella tularensis subsp. ho...    64   1e-08
AY967184_1(AY967184|pid:none) Synthetic construct isolate FTT040...    64   1e-08
CP001390_2000(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    60   2e-07
BA000030_3557(BA000030|pid:none) Streptomyces avermitilis MA-468...    59   6e-07
CP000361_689(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    59   6e-07
protein update 2009. 4.13
PSORT 

 psg: 0.47  gvh: 0.04  alm: 0.16  top: 0.00  tms: 0.27  mit: 0.37  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: plasma membrane
	 24.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CHS122 is pla
5' end seq. ID CHS122F
5' end seq. 
>CHS122F.Seq
GAAAAAAAGATTAAAATAAACAATAAAAAATAGTTTTATATATGTATATATATTACTATT
AAAAAAAGAAACAAAAAAATAGAAACCAAAAAATAATGACAAATAAAAGGAATAATAAAT
ATCAATCTATAAATAATAATGATGATGAAGAAGATGATGATTTTATAAAATCAAGAGATT
ATAATAATAATAATAATAATAATAATAATAATAATGTAAAAATAAATAAAAGTAATGGTA
GTAGTAGTAGTAGCGATAGTTTTGATGAATTTATAGAAAATTCAGAAGAACAAACATTTT
TAAAAAATAAAGATAATTATGATGACAATGGTAAAATTAAGAAGAAAATATCAAGTAAAC
CTTATGGTAAATTCAAGGGTATATCAAATGCAATAAATGGTGATACAGTAAAAGTGAAGA
TAGTGAATTGGTTTAGAACATTACTCTACCATTGGAAACATTTCTTTTCACATACATTAA
GAATCAATCTACGTAATAAGTTATCCTATTTGTTAGGATTTTCCGCATGCTTCTTGGTAG
TGTTTATAGTGTCACTATGTGTTTCCATCATCACCAACACACCAGTGGTATTCCTAAGTT
TGTCAGAAGCAAGTGTTGGTGAAATGGATATGGTGTTGACACCTGGTTCATGGNNNNNNN
NNN
Length of 5' end seq. 663
3' end seq. ID CHS122Z
3' end seq. 
>CHS122Z.Seq
NNNNNNNNNNAAGATAATCATTGGTTCATTGTATACCGATGTTATTGGTGCTTCAATTGA
TCAATCATTCCTATTACAATTAAATATTAAATCTGGTGAAGCTTCATCAGTTAATTCCAC
TAGACACTTAGTTAAACCATCGGCAATGTTAGATAGCGCACCATCTTTTAAATTCTCTAA
ATTCCCATCAGTTACAAATCAAGATTCAATCGTATCATTTCCAACTTATCTCTCGTATGC
AAGTAGTATCTTCTCATCAGTACGTGAAATTCCAATGAATCAAGTGATTTTGAAATTGAA
TACTGATGATAAAGATGCTGTAGAATCAATAAAGAATCGTTTAAATAGCTTTTTAATTGG
TAATCTTAGAGAGGATTTCGATATGTTGGATTACTATGAAAAGATTAAACCTTTTGCAAC
GGCCTCTGTGATCATTCAATACTTTTTCAGTTTTACTACAGTTTTAGCAATGACCATCTC
TTTCTTCTCTTTAATGTCTTCTGTATATTCAAATATTTTAGAACAAACTAAAGAAATTGG
TGTTTTATGTGCATTGGGAATACCAAAATCTTGGATGATTAGAATTTACGTCTATGAAGC
TTTCGTATTGGTTATGGCTTCCTCAATGTTGGGTATGTTTATTGGTTCAACTGTTGGTTT
CACAATGATCCTTCAAAGACAATTATTTACAATGTTACCAATTCCAATGACTTTACCTTG
GCAATTAATTATAATAGTTTTCATTTGTTCAATGTTTTTCTCTTTCTTTTCAGCTTTGGA
CCAATTAGAAAAGTACTAATCAACCCGTTGTTAGTATAA
Length of 3' end seq. 819
Connected seq. ID CHS122P
Connected seq. 
>CHS122P.Seq
GAAAAAAAGATTAAAATAAACAATAAAAAATAGTTTTATATATGTATATATATTACTATT
AAAAAAAGAAACAAAAAAATAGAAACCAAAAAATAATGACAAATAAAAGGAATAATAAAT
ATCAATCTATAAATAATAATGATGATGAAGAAGATGATGATTTTATAAAATCAAGAGATT
ATAATAATAATAATAATAATAATAATAATAATAATGTAAAAATAAATAAAAGTAATGGTA
GTAGTAGTAGTAGCGATAGTTTTGATGAATTTATAGAAAATTCAGAAGAACAAACATTTT
TAAAAAATAAAGATAATTATGATGACAATGGTAAAATTAAGAAGAAAATATCAAGTAAAC
CTTATGGTAAATTCAAGGGTATATCAAATGCAATAAATGGTGATACAGTAAAAGTGAAGA
TAGTGAATTGGTTTAGAACATTACTCTACCATTGGAAACATTTCTTTTCACATACATTAA
GAATCAATCTACGTAATAAGTTATCCTATTTGTTAGGATTTTCCGCATGCTTCTTGGTAG
TGTTTATAGTGTCACTATGTGTTTCCATCATCACCAACACACCAGTGGTATTCCTAAGTT
TGTCAGAAGCAAGTGTTGGTGAAATGGATATGGTGTTGACACCTGGTTCATGG-------
---AAGATAATCATTGGTTCATTGTATACCGATGTTATTGGTGCTTCAATTGATCAATCA
TTCCTATTACAATTAAATATTAAATCTGGTGAAGCTTCATCAGTTAATTCCACTAGACAC
TTAGTTAAACCATCGGCAATGTTAGATAGCGCACCATCTTTTAAATTCTCTAAATTCCCA
TCAGTTACAAATCAAGATTCAATCGTATCATTTCCAACTTATCTCTCGTATGCAAGTAGT
ATCTTCTCATCAGTACGTGAAATTCCAATGAATCAAGTGATTTTGAAATTGAATACTGAT
GATAAAGATGCTGTAGAATCAATAAAGAATCGTTTAAATAGCTTTTTAATTGGTAATCTT
AGAGAGGATTTCGATATGTTGGATTACTATGAAAAGATTAAACCTTTTGCAACGGCCTCT
GTGATCATTCAATACTTTTTCAGTTTTACTACAGTTTTAGCAATGACCATCTCTTTCTTC
TCTTTAATGTCTTCTGTATATTCAAATATTTTAGAACAAACTAAAGAAATTGGTGTTTTA
TGTGCATTGGGAATACCAAAATCTTGGATGATTAGAATTTACGTCTATGAAGCTTTCGTA
TTGGTTATGGCTTCCTCAATGTTGGGTATGTTTATTGGTTCAACTGTTGGTTTCACAATG
ATCCTTCAAAGACAATTATTTACAATGTTACCAATTCCAATGACTTTACCTTGGCAATTA
ATTATAATAGTTTTCATTTGTTCAATGTTTTTCTCTTTCTTTTCAGCTTTGGACCAATTA
GAAAAGTACTAATCAACCCGTTGTTAGTATAA
Length of connected seq. 1462
Full length Seq ID -
Full length Seq. -
Length of full length seq. -