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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS120
Library CH
(Link to library)
Clone ID CHS120
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16524-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS120 (CHS120Q) /CSM/CH/CHS1-A/CHS120Q.Seq.d/
AAAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTAT
AATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATA
TAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAAXX
XXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
kniqlsnnnnknnnnnkel*SNNNIAIIYNYYSKITYTYINNYYYHCF*k*ink**kk--
-
Translated Amino Acid sequence (All Frames) 
Frame A:
kkifnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*innkkk-
--


Frame B:
kkystq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iikk--
-


Frame C:
kniqlsnnnnknnnnnkel*SNNNIAIIYNYYSKITYTYINNYYYHCF*k*ink**kk--
-
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF677 (SLF677Q) /CSM/SL/SLF6-D/SLF677Q.Seq.d/                         38   0.044
SHK252 (SHK252Q) /CSM/SH/SHK2-C/SHK252Q.Seq.d/                         38   0.044
SHK107 (SHK107Q) /CSM/SH/SHK1-A/SHK107Q.Seq.d/                         38   0.044
SHI766 (SHI766Q) /CSM/SH/SHI7-C/SHI766Q.Seq.d/                         38   0.044
SHI265 (SHI265Q) /CSM/SH/SHI2-C/SHI265Q.Seq.d/                         38   0.044
SHH479 (SHH479Q) /CSM/SH/SHH4-D/SHH479Q.Seq.d/                         38   0.044
SHC473 (SHC473Q) /CSM/SH/SHC4-D/SHC473Q.Seq.d/                         38   0.044
SFL269 (SFL269Q) /CSM/SF/SFL2-C/SFL269Q.Seq.d/                         38   0.044
SFL251 (SFL251Q) /CSM/SF/SFL2-C/SFL251Q.Seq.d/                         38   0.044
SFL138 (SFL138Q) /CSM/SF/SFL1-B/SFL138Q.Seq.d/                         38   0.044
own update 2002.11.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M34548|M34548.1 D.discoideum spore coat 96 (sp96) gene, 5' flank.    38   0.009  2
S96842|S96842.1 SP96=spore-coat protein {5' region} [Dictyostelium discoideum, prespore cells, Genomic, 2305 nt].    38   0.028  2
dna update 2002.12.10
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.284    0.106    0.239

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 59,490,787
protein update 2009. 4.13
PSORT 

 psg: 0.80  gvh: 0.05  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for CHS120 is nuc
5' end seq. ID CHS120F
5' end seq. 
>CHS120F.Seq
AAAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAATAAGGAATTAT
AATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACGTATACATATA
TAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAAAAAAAAAANN
NNNNNNNN
Length of 5' end seq. 188
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -