>CHS119 (CHS119Q) /CSM/CH/CHS1-A/CHS119Q.Seq.d/
AATATTATTTATTTATTTATTTATTAATAATTAACAAATGGGAGACCATTTAAAAAATAC
AAGAGAATGGATAAGACATTCATCAAATAAAGACGATGGTAATAATGCAGAAAAAACTCA
CTTTTTTGGTCATCACGAAGAAGAAGATCATGAACATATGTTATTTACCAAAGAAGAATT
AACAAATCCNAAAGAATTGGCTAAAGCAATGAAAGTTAAAATTCCACTTTATGTACCAAT
TTTTAATTGGATTAAATCATATTCAAAAGAAGATTTAATTGGTGATATATTATCATCAAT
TACAGNANCAACAATGTTAGTACCACAAGGTTTAGCATATGCAGTATTAGCAGGATTACC
AGCTATTTATGGTTTATATAGTGGTTGGTTACCATTGGTTATCTATTCATTTATGGGTGG
ATGTAAACAATTAGCCGTTGGACCAGAAGCATTATTATCAGTATTATTGGGATCAATTTT
AGGAGGTTATACAACACCACCAGAGGATATGACTTTAAATGATTATTTAGTATCAATTGC
ATTAACATTGGCATTATTAXXXXXXXXXX

ilfiylfinn*QMGDHLKNTREWIRHSSNKDDGNNAEKTHFFGHHEEEDHEHMLFTKEEL
TNPKELAKAMKVKIPLYVPIFNWIKSYSKEDLIGDILSSITXXTMLVPQGLAYAVLAGLP
AIYGLYSGWLPLVIYSFMGGCKQLAVGPEALLSVLLGSILGGYTTPPEDMTLNDYLVSIA
LTLAL---

Frame A:
niiylfiy**ltngrpfkkykrmdktfik*rrw**crknslfwssrrrrs*tyviyqrri
nksxrig*snes*nstlctnf*ld*iifkrrfnw*yiiinyxxnnvsttrfsicsisrit
sylwfi*wlvtigylfiygwm*tisrwtrsiiisiiginfrrlynttrgydfk*lfsinc
inigii---


Frame B:
ilfiylfinn*QMGDHLKNTREWIRHSSNKDDGNNAEKTHFFGHHEEEDHEHMLFTKEEL
TNPKELAKAMKVKIPLYVPIFNWIKSYSKEDLIGDILSSITXXTMLVPQGLAYAVLAGLP
AIYGLYSGWLPLVIYSFMGGCKQLAVGPEALLSVLLGSILGGYTTPPEDMTLNDYLVSIA
LTLAL---


Frame C:
yylfiylliinkweti*kiqeng*dihqiktmvimqkkltflvitkkkimnicylpkkn*
qixknwlkq*klkfhfmyqfliglnhiqkki*lviyyhqlqxqqc*yhkv*hmqy*qdyq
lfmvyivvgyhwlsihlwvdvnn*pldqkhyyqyywdqf*eviqhhqri*l*mii*yqlh
*hwhy---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS119 (CHS119Q) /CSM/CH/CHS1-A/CHS119Q.Seq.d/                       1039   0.0
CHR636 (CHR636Q) /CSM/CH/CHR6-B/CHR636Q.Seq.d/                       1039   0.0
CHI591 (CHI591Q) /CSM/CH/CHI5-D/CHI591Q.Seq.d/                       1039   0.0
AHI857 (AHI857Q) /CSM/AH/AHI8-C/AHI857Q.Seq.d/                       1039   0.0
VHP484 (VHP484Q) /CSM/VH/VHP4-D/VHP484Q.Seq.d/                       1035   0.0
CHM244 (CHM244Q) /CSM/CH/CHM2-B/CHM244Q.Seq.d/                        872   0.0
AHD276 (AHD276Q) /CSM/AH/AHD2-D/AHD276Q.Seq.d/                        476   e-133
VSC562 (VSC562Q) /CSM/VS/VSC5-C/VSC562Q.Seq.d/                         36   0.56
VHD161 (VHD161Q) /CSM/VH/VHD1-C/VHD161Q.Seq.d/                         36   0.56
SSK343 (SSK343Q) /CSM/SS/SSK3-B/SSK343Q.Seq.d/                         36   0.56

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL772196|AL772196.13 Mouse DNA sequence from clone RP23-358M21 on chromosome 4.    40   0.36   3
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    38   0.36   8
AC170911|AC170911.2 Mus musculus BAC clone RP23-199D18 from chromosome 3, complete sequence.    46   0.78   1
AC159164|AC159164.3 Atelerix albiventris clone LB4-453G7, WORKING DRAFT SEQUENCE, 8 ordered pieces.    46   0.78   1
AM024281|AM024281.1 Bos taurus 3' EST, clone C0007398b08.          46   0.78   1
BX971867|BX971867.1 Reverse strand read from insert in 5'HPRT insertion targeting and chromosome engineering clone MHPN386m02.    46   0.78   1
AC092607|AC092607.2 Homo sapiens BAC clone RP11-154E5 from 2, complete sequence.    40   2.0    3
AC158695|AC158695.2 Bos taurus clone CH240-167A18, *** SEQUENCING IN PROGRESS ***, 41 unordered pieces.    44   3.1    1
AC151024|AC151024.1 Callithrix jacchus clone CH259-347L21, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44   3.1    1
AC111480|AC111480.4 Rattus norvegicus clone CH230-86G20, WORKING DRAFT SEQUENCE, 2 unordered pieces.    44   3.1    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000749_3181(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    85   1e-15
CP000749_3891(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    84   3e-15
CP000159_2186(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    83   4e-15
CP000031_1918(CP000031|pid:none) Silicibacter pomeroyi DSS-3, co...    83   6e-15
AP008215_97(AP008215|pid:none) Oryza sativa (japonica cultivar-g...    81   2e-14
AE014297_3790(AE014297|pid:none) Drosophila melanogaster chromos...    79   6e-14
CP000514_294(CP000514|pid:none) Marinobacter aquaeolei VT8, comp...    79   6e-14
CP001337_1104(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    79   6e-14
EU957449_1(EU957449|pid:none) Zea mays clone 1592634 sulfate tra...    79   8e-14
BT061916_1(BT061916|pid:none) Zea mays full-length cDNA clone ZM...    79   8e-14

 psg: 0.52  gvh: 0.26  alm: 0.31  top: 0.33  tms: 0.07  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHS119 is cyt

>CHS119F.Seq
AATATTATTTATTTATTTATTTATTAATAATTAACAAATGGGAGACCATTTAAAAAATAC
AAGAGAATGGATAAGACATTCATCAAATAAAGACGATGGTAATAATGCAGAAAAAACTCA
CTTTTTTGGTCATCACGAAGAAGAAGATCATGAACATATGTTATTTACCAAAGAAGAATT
AACAAATCCNAAAGAATTGGCTAAAGCAATGAAAGTTAAAATTCCACTTTATGTACCAAT
TTTTAATTGGATTAAATCATATTCAAAAGAAGATTTAATTGGTGATATATTATCATCAAT
TACAGNANCAACAATGTTAGTACCACAAGGTTTAGCATATGCAGTATTAGCAGGATTACC
AGCTATTTATGGTTTATATAGTGGTTGGTTACCATTGGTTATCTATTCATTTATGGGTGG
ATGTAAACAATTAGCCGTTGGACCAGAAGCATTATTATCAGTATTATTGGGATCAATTTT
AGGAGGTTATACAACACCACCAGAGGATATGACTTTAAATGATTATTTAGTATCAATTGC
ATTAACATTGGCATTATTANNNNNNNNNN