>CHS117 (CHS117Q) /CSM/CH/CHS1-A/CHS117Q.Seq.d/
AAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAA
AAAGATTTCTTTTTCTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATAC
ATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTACATCTAATCAAAT
TTCTGAAGATGTGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGA
ANATGTAGTTGTACAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTGA
ACATCAAAGACAANAATTATTAGGNGAAAAAACATGATTCATTAANANACTCTGCAACAA
ATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAAAGACAACAATAAAG
TTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCAGTATTG
GTGATTCAACTXXXXXXXXXXCCAGAGAGACTATATGAAGAAATTCATAATTCCCAATTT
GAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACC
TGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTAC
CAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGA
TATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGC
TAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCC
TGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACA
AGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATA
AT

slnnrnnkn*y*kkgtlkkkrflflf*nwyn*kcivknihpl**y*fyhvsfqhvhlikf
lkmwvkqlikn*mkilkklxm*lynlxmlqikllxn*klnikdxny*XKKHDSLXXSATN
YIWGLLDKIQSYLPKDNNKVSKVEXAFSXGQNNNIGSSIGDST---

---QRDYMKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*

Frame A:
kv*iieiikinikkker*kkkdfffffeigiiknv**kiyilcnsidfimyhfnmyi*sn
f*rcg*sn*skik*ky*ks*xcscti*xcckssy*xiks*tsktxiirxknmih*xtlqq
itfgdylikfkviyqkttikfqklxkhfqxakiiisvavlviq---

---perlyeeihnsqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*tr
ch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtif
k*kfttt**e*ksttttrtttsssnkc*ttnr*tt*syqrisktrstketknstrerccl
le*c*ksst*igc*ig*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*ik
srkkstiirtrtkski

Frame B:
kfk**k**klilkkrnvkkkkisfsflklv*lkmyskkytsfvivlilsciistctsnqi
sedvgkainqklneniekvexvvvqfxnvanqviexlkvehqrqxllgekt*fixxlcnk
lhlgit**nsklftkrqq*sfks*xsifkxpk**yr*qyw*fn---

---QRDYMKKFIIPNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQD
AIEQAQHLQRIENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFS
NKNLQQLNENENQQQQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVY
LSDVEKAQLELDAELAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLN
QEKNQQLLEQEQNQK*

Frame C:
slnnrnnkn*y*kkgtlkkkrflflf*nwyn*kcivknihpl**y*fyhvsfqhvhlikf
lkmwvkqlikn*mkilkklxm*lynlxmlqikllxn*klnikdxny*XKKHDSLXXSATN
YIWGLLDKIQSYLPKDNNKVSKVEXAFSXGQNNNIGSSIGDST---

---reti*rns*fpi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkm
plnklniynvlkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfq
ikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst
*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*i
kkkinny*nknkiknn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS117 (CHS117Q) /CSM/CH/CHS1-A/CHS117Q.Seq.d/                       1487   0.0
SHJ637 (SHJ637Q) /CSM/SH/SHJ6-B/SHJ637Q.Seq.d/                        767   0.0
SHG652 (SHG652Q) /CSM/SH/SHG6-C/SHG652Q.Seq.d/                        767   0.0
SHD214 (SHD214Q) /CSM/SH/SHD2-A/SHD214Q.Seq.d/                        767   0.0
SHD213 (SHD213Q) /CSM/SH/SHD2-A/SHD213Q.Seq.d/                        767   0.0
SHA293 (SHA293Q) /CSM/SH/SHA2-D/SHA293Q.Seq.d/                        767   0.0
CHR604 (CHR604Q) /CSM/CH/CHR6-A/CHR604Q.Seq.d/                        767   0.0
CHR581 (CHR581Q) /CSM/CH/CHR5-D/CHR581Q.Seq.d/                        767   0.0
CHI629 (CHI629Q) /CSM/CH/CHI6-B/CHI629Q.Seq.d/                        767   0.0
CHF665 (CHF665Q) /CSM/CH/CHF6-C/CHF665Q.Seq.d/                        767   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   704   0.0    8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   2e-26  10
AC005505|AC005505.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    38   9e-08  14
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    38   2e-07  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   7e-07  16
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    46   4e-05  16
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12 section 7 of 9 of the complete sequence.    38   6e-05  15
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    48   1e-04  2
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    40   1e-04  13
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   1e-04  12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   274   2e-74
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.82
CP001078_829(CP001078|pid:none) Clostridium botulinum E3 str. Al...    36   3.1
AP007164_721(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    36   3.1
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   4.1
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   4.1
CR450845_2(CR450845|pid:none) Zebrafish DNA sequence from clone ...    35   4.1
AE014186_170(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    35   5.3
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   7.0
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    35   7.0

 psg: 0.83  gvh: 0.36  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHS117 is nuc

>CHS117F.Seq
AAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAA
AAAGATTTCTTTTTCTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATAC
ATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTACATCTAATCAAAT
TTCTGAAGATGTGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGA
ANATGTAGTTGTACAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTGA
ACATCAAAGACAANAATTATTAGGNGAAAAAACATGATTCATTAANANACTCTGCAACAA
ATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAAAGACAACAATAAAG
TTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCAGTATTG
GTGATTCAACTNNNNNNNNNN

>CHS117Z.Seq
NNNNNNNNNNCCAGAGAGACTATATGAAGAAATTCATAATTCCCAATTTGAATAAAGCAG
TTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACCTGCTGTAAACT
CTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAG
ATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGT
ATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAAT
TACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTT
CAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAAC
AACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAG
AATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCT
ACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATA
AACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTA
AAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAA
ATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAAT

>CHS117P.Seq
AAAGTTTAAATAATAGAAATAATAAAAATTAATATTAAAAAAAAGGAACGTTAAAAAAAA
AAAGATTTCTTTTTCTTTTTTGAAATTGGTATAATTAAAAATGTATAGTAAAAAATATAC
ATCCTTTGTAATAGTATTGATTTTATCATGTATCATTTCAACATGTACATCTAATCAAAT
TTCTGAAGATGTGGGTAAAGCAATTAATCAAAAATTAAATGAAAATATTGAAAAAGTTGA
ANATGTAGTTGTACAATTTGANAATGTTGCAAATCAAGTTATTGAANAATTAAAAGTTGA
ACATCAAAGACAANAATTATTAGGNGAAAAAACATGATTCATTAANANACTCTGCAACAA
ATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTACCAAAAGACAACAATAAAG
TTTCAAAAGTTGAANAAGCATTTTCAAGNGGCCAAAATAATAATATCGGTAGCAGTATTG
GTGATTCAACT----------CCAGAGAGACTATATGAAGAAATTCATAATTCCCAATTT
GAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAACAAAATGGTAATGGTTCACC
TGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTAC
CAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGA
TATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGA
TGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGA
AGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACA
ACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAA
AGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAA
CGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGC
TAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCC
TGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACA
AGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCAAAAATA
AT