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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS115
Library CH
(Link to library)
Clone ID CHS115
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16259-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>CHS115 (CHS115Q) /CSM/CH/CHS1-A/CHS115Q.Seq.d/
ATTATATTATAATTTCATTATATATTTTTCATTTTATTAAAATTAATAATATATAATATA
TAATATATATATTACTTTTACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAAT
AAAATTTTATTTTTATTTTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGT
TATACTTTATCTGTTAAAGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAA
ATTACTGAAATTTTGTTAACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACT
TGTGAAATTCCATCTGCCAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAA
TTAGCTGGAAAATTAACTCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCC
TATGATATTAAAGCCAATCAAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCA
CCXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence 
iil*fhyiffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAG
YTLSVKGKKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTK
LAGKLTLRGANLKTPNIVIAYDIKANQIPLPLPTEVKWEP---
Translated Amino Acid sequence (All Frames) 
Frame A:
iil*fhyiffillkliiyni*yiyyfy*yiff*FKKMLINKILFLFFILSLTIFNIVDAG
YTLSVKGKKLIYTGANVDFKITEILLTSQKILPDYSITFTCEIPSANSPVCTSMDMDFTK
LAGKLTLRGANLKTPNIVIAYDIKANQIPLPLPTEVKWEP---


Frame B:
lyynfiiyfsfy*n**yiiyniyitftniyffnlkkc**ikfyfyflfyh*qylillmlv
ilyllkeks*yilvpm*iskllkfc*lpkkyyqitqlhslvkfhlpialfvrvwiwtlqn
*len*l*geqi*kpqi**lpmilkpikfhyhyqlrlngnh---


Frame C:
yiiislyifhfikinni*yiiyilllliyifli*knvnk*nfififysitnni*yc*cwl
yfic*rkkvniywcqcrfqny*nfvnfpknitrllnyihl*nsicq*pclyeygyglyki
swkinskgskfknpkysncl*y*sqsnsttitn*g*mgt---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHB874 (SHB874Q) /CSM/SH/SHB8-D/SHB874Q.Seq.d/                        676   0.0
SHL869 (SHL869Q) /CSM/SH/SHL8-C/SHL869Q.Seq.d/                        676   0.0
SHL629 (SHL629Q) /CSM/SH/SHL6-B/SHL629Q.Seq.d/                        676   0.0
SHL434 (SHL434Q) /CSM/SH/SHL4-B/SHL434Q.Seq.d/                        676   0.0
SHL431 (SHL431Q) /CSM/SH/SHL4-B/SHL431Q.Seq.d/                        676   0.0
SHL371 (SHL371Q) /CSM/SH/SHL3-C/SHL371Q.Seq.d/                        676   0.0
SHL351 (SHL351Q) /CSM/SH/SHL3-C/SHL351Q.Seq.d/                        676   0.0
SHL288 (SHL288Q) /CSM/SH/SHL2-D/SHL288Q.Seq.d/                        676   0.0
SHL231 (SHL231Q) /CSM/SH/SHL2-B/SHL231Q.Seq.d/                        676   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CZ518228|CZ518228.1 GMW2-73G17a.b1 GMW2 Glycine max genomic, genomic survey sequence.    46   0.67   1
CK295567|CK295567.1 EST758281 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMCV80 5' end, mRNA sequence.    44   2.6    1
AC126969|AC126969.3 Rattus norvegicus clone CH230-197P4, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44   2.6    1
AC098757|AC098757.9 Rattus norvegicus clone CH230-86J1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   2.6    1
CZ544989|CZ544989.1 SRAA-aad59b06.g1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    44   2.6    1
CT010458|CT010458.8 Mouse DNA sequence from clone RP23-279C9 on chromosome 13.    44   2.6    1
AC154364|AC154364.2 Mus musculus BAC clone RP24-559G11 from chromosome 13, complete sequence.    44   2.6    1
BV648320|BV648320.1 S215P60562RH4.T0 Clara Pan troglodytes troglodytes STS genomic, sequence tagged site.    34   3.7    2
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   4.4    5
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001055_10(CP001055|pid:none) Elusimicrobium minutum Pei191, co...    34   2.0
CP000685_1388(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   3.5
AY524943_1(AY524943|pid:none) Rhampholeon temporalis isolate 3 r...    32   7.5
DQ385413_1(DQ385413|pid:none) Phrynosoma modestum recombination ...    32   7.5
AY524942_1(AY524942|pid:none) Rhampholeon temporalis isolate 1 r...    32   9.8
protein update 2008.11. 9
PSORT 

 psg: 1.02  gvh: 0.61  alm: 0.23  top: 0.40  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CHS115 is end
5' end seq. ID CHS115F
5' end seq. 
>CHS115F.Seq
ATTATATTATAATTTCATTATATATTTTTCATTTTATTAAAATTAATAATATATAATATA
TAATATATATATTACTTTTACTAATATATATTTTTTTAATTTAAAAAAATGTTAATAAAT
AAAATTTTATTTTTATTTTTTATTCTATCACTAACAATATTTAATATTGTTGATGCTGGT
TATACTTTATCTGTTAAAGGAAAAAAGTTAATATATACTGGTGCCAATGTAGATTTCAAA
ATTACTGAAATTTTGTTAACTTCCCAAAAAATATTACCAGATTACTCAATTACATTCACT
TGTGAAATTCCATCTGCCAATAGCCCTGTTTGTACGAGTATGGATATGGACTTTACAAAA
TTAGCTGGAAAATTAACTCTAAGGGGAGCAAATTTAAAAACCCCAAATATAGTAATTGCC
TATGATATTAAAGCCAATCAAATTCCACTACCATTACCAACTGAGGTTAAATGGGAACCA
CCNNNNNNNNNN
Length of 5' end seq. 492
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -