CHS112
Library CH
(Link to library)
Clone ID CHS112
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15579-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>CHS112 (CHS112Q) /CSM/CH/CHS1-A/CHS112Q.Seq.d/
ATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTAAC
ATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAA
AAAGAAATAAATTGATTTTTAATTATAAAAAAAAAAXXXXXXXXXX
sequence update 2002.10.25
Translated Amino Acid sequence
*tfnk*NTIKINIIYIFIVTLYEYLKIGKHFLKIGKHY*kkk*idf*l*kk---


Translated Amino Acid sequence (All Frames)
Frame A:
mni**ikhnknqyylyiysnii*ifknwktffknwktllkkein*fliikk---


Frame B:
*tfnk*NTIKINIIYIFIVTLYEYLKIGKHFLKIGKHY*kkk*idf*l*kk---


Frame C:
ehlinktq*ksilfiyl**hymni*klenif*kleniikkrnklifnykkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLI746 (SLI746Q) /CSM/SL/SLI7-B/SLI746Q.Seq.d/ 137 6e-32
SHK570 (SHK570Q) /CSM/SH/SHK5-C/SHK570Q.Seq.d/ 137 6e-32
SHH456 (SHH456Q) /CSM/SH/SHH4-C/SHH456Q.Seq.d/ 137 6e-32
SHF881 (SHF881Q) /CSM/SH/SHF8-D/SHF881Q.Seq.d/ 137 6e-32
SFL402 (SFL402Q) /CSM/SF/SFL4-A/SFL402Q.Seq.d/ 137 6e-32
SFL207 (SFL207Q) /CSM/SF/SFL2-A/SFL207Q.Seq.d/ 137 6e-32
SFL206 (SFL206Q) /CSM/SF/SFL2-A/SFL206Q.Seq.d/ 137 6e-32
SFJ353 (SFJ353Q) /CSM/SF/SFJ3-C/SFJ353Q.Seq.d/ 137 6e-32
SFH765 (SFH765Q) /CSM/SF/SFH7-C/SFH765Q.Seq.d/ 137 6e-32
SFH149 (SFH149Q) /CSM/SF/SFH1-C/SFH149Q.Seq.d/ 137 6e-32

own update 2002.11.28
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CR384068|CR384068.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone BUSM1-188P22. 48 0.010 3
CR954246|CR954246.1 Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence. 50 0.013 1
AC164411|AC164411.4 Mus musculus chromosome 1, clone RP23-60E6, complete sequence. 50 0.013 1
AC102666|AC102666.12 Mus musculus chromosome 1, clone RP23-444A8, complete sequence. 50 0.013 1
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence. 34 0.032 2
AC144708|AC144708.2 Danio rerio clone CH211-173B16, complete sequence. 40 0.035 2
CB938049|CB938049.1 IpCGJx13_25_D02_23 IpCGJx13 Ictalurus punctatus cDNA clone IpCGJx13_25_D02 5', mRNA sequence. 38 0.041 2
CT027768|CT027768.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-262G18. 48 0.053 1
AC133054|AC133054.3 Rattus norvegicus clone CH230-351F22, WORKING DRAFT SEQUENCE, 2 unordered pieces. 48 0.053 1
AC113806|AC113806.5 Rattus norvegicus clone CH230-297K14, WORKING DRAFT SEQUENCE, 2 unordered pieces. 48 0.053 1
dna update 2005.11.26
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 108,840,145
protein update 2009. 4.13
PSORT

psg: 0.95 gvh: 0.21 alm: 0.36 top: 0.67 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: extracellular, including cell wall

>> prediction for CHS112 is nuc

5' end seq. ID CHS112F
5' end seq.
>CHS112F.Seq
ATGAACATTTAATAAATAAAACACAATAAAAATCAATATTATTTATATATTTATAGTAAC
ATTATATGAATATTTAAAAATTGGAAAACATTTTTTAAAAATTGGAAAACATTATTAAAA
AAAGAAATAAATTGATTTTTAATTATAAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 166
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -