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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS109
Library CH
(Link to library)
Clone ID CHS109
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CHS109P
(Link to Original site)
Representative DNA sequence 
>CHS109 (CHS109Q) /CSM/CH/CHS1-A/CHS109Q.Seq.d/
TTGATTTTATCATGTATCATTTCAACATGTNCATNTAATCAAATTTNTGAANATGNGGGT
AAAGCANTTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAAAATGTANTTGTNCAA
TTTGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCNTCAAAGACAANAA
TTNTTAGGNGAAGTAAAACATGATTCATTAAAANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTNCCAAAANACANCANTAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCXXXXXXXXXXAAAGCAGTTCAAGAGGC
TGAAGAAATTGAAAGACANCAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGAT
TGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGA
ACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGC
CCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGA
AATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAA
TTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCA
AGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGA
TGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATT
AAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAA
AAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAAT
sequence update 2002.10.25
Translated Amino Acid sequence 
LILSCIISTCXXNQIXEXXGKAXNQKLNENXEKVENVXVQFENVANQVXEKLKVXXQRQX
XLGEVKHDSLKXXAXNYIXGLLDKIQSXXPKXXXKVSKVEKXFSXGQNNNI---

---KAVQEAEEIERXQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENG
EDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQ
QQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAE
LAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQ
K*
Translated Amino Acid sequence (All Frames) 
Frame A:
LILSCIISTCXXNQIXEXXGKAXNQKLNENXEKVENVXVQFENVANQVXEKLKVXXQRQX
XLGEVKHDSLKXXAXNYIXGLLDKIQSXXPKXXXKVSKVEKXFSXGQNNNI---

---KAVQEAEEIERXQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQRIENG
EDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLEENEEEQFSNKNLQQLNENENQQ
QQQGQQQVQATNVEQQIVEQLKVIKEFQRQDQQKKQKIQQENDAVYLSDVEKAQLELDAE
LAKNNKQENQDENLVQEKQQSPDQIKNQLKNIQHEQQIQEQQDKLNQEKNQQLLEQEQNQ
K*

Frame B:
*fyhvsfqhvhxikfxxmxvkxlikn*mkxlkklkmxlxnlkmlqikxlkn*klxxkdxn
x*xk*nmih*xtxxqitxgdylikfkvxxqxtxxkfqklkxhfqxakiii---

---kqfkrlkklkdxkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynvlkmv
kismsmklpnmklpf*mkmnkmllnykmkwtn*nsylkrmkknnfqikiynnlmrmkinn
nnkdnnkfkqqmlnnkslnnlklsknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmln
wlkiinkrikmri*fkrnnnlltklkin*kifnmnnksknnkin*ikkkinny*nknkik
nn

Frame C:
dfimyhfnmxx*snx*xxg*sx*skik*kx*ks*kcxcxi*kcckssx*kiks*xsktxi
xrxskt*fikxlcxklhxgit**nskxfxkxxx*sfks*kxifkxpk**y---

---sssrg*rn*ktxkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty*kw*
ryr*v*scpt*sclfr*k*trcc*itk*ngpirtlt*re*rrtifk*kfttt**e*kstt
ttrtttsssnkc*ttnr*tt*syqrisktrstketknstrercclle*c*ksst*igc*i
g*k**tresr*efssrettis*pn*ksikkyst*ttnprttr*iksrkkstiirtrtksk
i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SHL875 (SHL875Q) /CSM/SH/SHL8-D/SHL875Q.Seq.d/                        676   0.0
SHL866 (SHL866Q) /CSM/SH/SHL8-C/SHL866Q.Seq.d/                        676   0.0
SHL857 (SHL857Q) /CSM/SH/SHL8-C/SHL857Q.Seq.d/                        676   0.0
SHL828 (SHL828Q) /CSM/SH/SHL8-B/SHL828Q.Seq.d/                        676   0.0
SHL815 (SHL815Q) /CSM/SH/SHL8-A/SHL815Q.Seq.d/                        676   0.0
SHL770 (SHL770Q) /CSM/SH/SHL7-C/SHL770Q.Seq.d/                        676   0.0
SHL767 (SHL767Q) /CSM/SH/SHL7-C/SHL767Q.Seq.d/                        676   0.0
SHL751 (SHL751Q) /CSM/SH/SHL7-C/SHL751Q.Seq.d/                        676   0.0
SHL740 (SHL740Q) /CSM/SH/SHL7-B/SHL740Q.Seq.d/                        676   0.0
SHL732 (SHL732Q) /CSM/SH/SHL7-B/SHL732Q.Seq.d/                        676   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   676   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   127   5e-25  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   2e-04  10
CR962128|CR962128.1 Medicago truncatula chromosome 5 clone mth2-2o11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    34   0.015  7
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   0.031  9
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    34   0.091  9
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34   0.20   14
AC098999|AC098999.8 Rattus norvegicus clone CH230-186P20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.21   2
AC134802|AC134802.2 Rattus norvegicus clone CH230-461P11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.21   2
BH137529|BH137529.1 ENTPA17TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34   0.24   3
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   266   1e-69
AJ969441_1(AJ969441|pid:none) Trypanosoma cruzi garp gene for gl...    38   0.65
AP004317_15(AP004317|pid:none) Oryza sativa Japonica Group genom...    35   3.2
AF314648_2(AF314648|pid:none) Plasmodium vivax CG9 (cg9) gene, c...    35   3.2
(Q54F33) RecName: Full=Uncharacterized protein DDB_G0291143;           35   5.5
AM920435_502(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    34   7.1
protein update 2009. 4.13
PSORT 

 psg: 0.94  gvh: 0.53  alm: 0.45  top: 0.47  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CHS109 is nuc
5' end seq. ID CHS109F
5' end seq. 
>CHS109F.Seq
TTGATTTTATCATGTATCATTTCAACATGTNCATNTAATCAAATTTNTGAANATGNGGGT
AAAGCANTTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAAAATGTANTTGTNCAA
TTTGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCNTCAAAGACAANAA
TTNTTAGGNGAAGTAAAACATGATTCATTAAAANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTNCCAAAANACANCANTAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATCNNNNNNNNNN
Length of 5' end seq. 343
3' end seq. ID CHS109Z
3' end seq. 
>CHS109Z.Seq
NNNNNNNNNNAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACANCAAAATGGTAATGG
TTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATGTTGAAAATAATGA
AATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGG
TGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGA
ACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAA
TGAAGAAGAACAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACA
ACAACAACAAGGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACA
ACTTAAAGTTATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACA
AGAGAACGATGCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGA
ATTGGCTAAAAATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACA
ATCTCCTGACCAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGA
ACAACAAGATAAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAGAACAAAATCA
AAAATAAT
Length of 3' end seq. 728
Connected seq. ID CHS109P
Connected seq. 
>CHS109P.Seq
TTGATTTTATCATGTATCATTTCAACATGTNCATNTAATCAAATTTNTGAANATGNGGGT
AAAGCANTTAATCAAAAATTAAATGAAAATNTTGAAAAAGTTGAAAATGTANTTGTNCAA
TTTGAAAATGTTGCAAATCAAGTTNTTGAAAAATTAAAAGTTGANCNTCAAAGACAANAA
TTNTTAGGNGAAGTAAAACATGATTCATTAAAANACTNTGCANCAAATTACATTNGGGGA
TTACTTGATAAAATTCAAAGTTNTTTNCCAAAANACANCANTAAAGTTTCAAAAGTTGAA
AAANCATTTTCAAGNGGCCAAAATAATAATATC----------AAAGCAGTTCAAGAGGC
TGAAGAAATTGAAAGACANCAAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGAT
TGTAACTCAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGA
ACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGC
CCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGA
AATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAA
TTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCA
AGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGA
TGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATT
AAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAA
AAATCAACAATTATTAGAACAAGAACAAAATCAAAAATAAT
Length of connected seq. 1051
Full length Seq ID -
Full length Seq. -
Length of full length seq. -