>CHS105 (CHS105Q) /CSM/CH/CHS1-A/CHS105Q.Seq.d/
ATTTATATTTTTAATTTTATAAAATTAAAAAAAAAAATTTTTAAAAAATTATAGTTTTAC
TATAACATAAAACAAAACTACAAATATAACAACAATAATACATATTTCATTTTTATTTTT
AATTACTATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTA
ACAATATGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACG
AAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATCAAATACCAATTTAA
ATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAACCAATGGTTCAACAC
CAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTCTGCAGAGGAGCTTG
AAAAACAAAAGAAAGAAGAGGACGAAAAAAGAAAGAAATCAGAATTGGAGGCTGCTGCAG
CCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGAACAAGTTGAACTTG
AAAGAAAAAGACGTGACGAAXXXXXXXXXXGTCAACAATTGGAGCGTCTTATGGCAGAGT
TTAAAGCCGTATGTGATAATAGTAAAATCTCTGAAGTTAAAATGGATGATATTGCCACCG
CAAGTGGTATCAATAAATTAAATAACATTCCAAATTATGCTTGGGCCGCAAGTGATTTAA
CTTCACTCATATCAAGAGATACCTTTGTTCCATTGATTGAACAATTGTGTGAACGTGCCA
TGTACATTATGAAAAGATTAACCGATATCGCTGATAAAGTTATCGATAGTCGTAGAAAGA
GTCGTTGTATTGGTTCATCACCATTTGGCGGTAACGGTTTAAATAATATTAACAGCGGCG
GCAATAATGGCATCAACATCAATGATCGTTTATCAAATACTGATATGGATAGTTTAGATC
AATATCCATTCTTTACTCATCATGTAAAGAATCTTTATTATGATTTCGTTCATAGAGCTG
CCAAAGGTTGTAAAGAGAAATGTATGGACGAATTCTATTCTTCAAGAACTATCTATTGGG
AATTAACTGAACATCCAGATAGTTCATTACCAAGTATTAGAAATGATCATCATGAAACTA
AAACTGCTGTTTGTCAATTGGCTACAAAATTATTTGATTCCATTCGTCAAAGAATCACTA
AAAATGTTTTATTAAAGTTATACAATTTCTTTTTGGTACCAATGCAAACTGACCTTTGGA
ANAAATTCAAGCTCAAATCACTTGTCTCTCAAAGAACAATGGAACAACTCTTT

lyf*fykikkknf*kiivll*hktklqi*qq*yifhfyf*lllqfflksipqlllln*SN
NMSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTP
NNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELE
RKRRDE---

---QQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDT
FVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININ
DRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDS
SLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWXKFKLKSL
VSQRTMEQLF

Frame A:
iyifnfiklkkkifkkl*fyynikqnykynnnntyfififnyyynff*nqylnyyysikv
ticlysrkkinlmtkrknmtkrlhkehfnqqvnqhqipi*ih*hhqltmvqv*vqpmvqh
qiipmdqhqpiiittlqrslknkrkkrtkkernqnwrllqp*llkrkkmkrnkeknklnl
kekdvt---

---vnnwsvlwqslkpyviivkslklkwmilppqvvsin*itfqimlgpqvi*lhsyqei
plfh*lnncvnvpctl*kd*pisliklsivvervvvlvhhhlavtv*iiltaaaimasts
mivyqiliwiv*inihsllim*rifimisfielpkvvkrnvwtnsilqelsign*lniqi
vhyqvlemiimklkllfvnwlqnylipfvkeslkmfy*sytisfwyqckltfgxnsssnh
lslkeqwnns

Frame B:
fiflil*n*kkkflknysftit*nkttnittiihisflflititiffkintsititqlk*
qyvciqekr*i**qkekt*rrdstrnistsksinikyqfkfisiis*qwckcrfnqwfnt
k*fqwintnl*s*qlcrga*ktkerrgrkkkeiriggccsrsc*kerr*retkkrts*t*
kkkt*r---

---stigasygrv*srm****nl*s*ng*ychrkwyq*ik*hsklclgrk*fnfthikry
lcsid*tiv*tchvhyekinryr**syr*s*keslywfitiwr*rfk*y*qrrq*whqhq
*sfiky*yg*frsisilyssckesll*frs*scqrl*remygrilffknyllgin*tsr*
fitky*k*ss*n*ncclsigykii*fhssknh*kcfikviqflfgtnan*plexiqaqit
clsknngttl

Frame C:
lyf*fykikkknf*kiivll*hktklqi*qq*yifhfyf*lllqfflksipqlllln*SN
NMSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTP
NNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELE
RKRRDE---

---QQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDT
FVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININ
DRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDS
SLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWXKFKLKSL
VSQRTMEQLF

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS105 (CHS105Q) /CSM/CH/CHS1-A/CHS105Q.Seq.d/                       1467   0.0
VHO592 (VHO592Q) /CSM/VH/VHO5-D/VHO592Q.Seq.d/                       1451   0.0
CHL202 (CHL202Q) /CSM/CH/CHL2-A/CHL202Q.Seq.d/                       1443   0.0
SHJ851 (SHJ851Q) /CSM/SH/SHJ8-C/SHJ851Q.Seq.d/                       1241   0.0
AHQ387 (AHQ387Q) /CSM/AH/AHQ3-D/AHQ387Q.Seq.d/                       1235   0.0
AHE152 (AHE152Q) /CSM/AH/AHE1-C/AHE152Q.Seq.d/                       1219   0.0
CHI669 (CHI669Q) /CSM/CH/CHI6-C/CHI669Q.Seq.d/                       1215   0.0
SHA511 (SHA511Q) /CSM/SH/SHA5-A/SHA511Q.Seq.d/                       1191   0.0
VHP620 (VHP620Q) /CSM/VH/VHP6-A/VHP620Q.Seq.d/                       1187   0.0
VHE470 (VHE470Q) /CSM/VH/VHE4-C/VHE470Q.Seq.d/                       1176   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CT033798|CT033798.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH73-180N10.    50   0.12   1
CT033800|CT033800.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH73-385F14.    50   0.12   1
AC134754|AC134754.2 Rattus norvegicus clone CH230-339J24, WORKING DRAFT SEQUENCE, 1 ordered piece.    50   0.12   1
AC094982|AC094982.6 Rattus norvegicus clone CH230-6G7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    50   0.12   1
BZ133281|BZ133281.1 CH230-431C18.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-431C18, DNA sequence.    50   0.12   1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.27   14
AC022485|AC022485.4 Homo sapiens chromosome 8 clone RP11-555B1, WORKING DRAFT SEQUENCE, 20 unordered pieces.    48   0.47   1
CZ545249|CZ545249.1 SRAA-aad60g05.b1 Strongyloides ratti whole genome shotgun library (SRAAGSS 004) Strongyloides ratti genomic, genomic survey sequence.    48   0.47   1
AC018676|AC018676.5 Homo sapiens BAC clone RP11-255L13 from 8, complete sequence.    48   0.47   1
AC105026|AC105026.4 Homo sapiens chromosome 8, clone CTD-2152D24, complete sequence.    48   0.47   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_36(AC116982|pid:none) Dictyostelium discoideum chromoso...    76   2e-12
AB426138_1(AB426138|pid:none) Physcomitrella patens PpDRP5B-2 ge...    67   2e-09
BT066817_1(BT066817|pid:none) Zea mays full-length cDNA clone ZM...    60   2e-07
AK072318_1(AK072318|pid:none) Oryza sativa Japonica Group cDNA c...    59   5e-07
AM483765_2(AM483765|pid:none) Vitis vinifera contig VV78X210202....    56   2e-06
AB426136_1(AB426136|pid:none) Physcomitrella patens PpDRP5B-1 ge...    56   2e-06
AB182156_1(AB182156|pid:none) Physcomitrella patens subsp. paten...    56   2e-06
AY212885_1(AY212885|pid:none) Arabidopsis thaliana dynamin-like ...    55   5e-06
AB094119_1(AB094119|pid:none) Cyanidioschyzon merolae Cmdnm2 gen...    47   0.002
BT033550_1(BT033550|pid:none) Zea mays full-length cDNA clone ZM...    38   0.87

 psg: 0.11  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.34  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CHS105 is nuc

>CHS105F.Seq
ATTTATATTTTTAATTTTATAAAATTAAAAAAAAAAATTTTTAAAAAATTATAGTTTTAC
TATAACATAAAACAAAACTACAAATATAACAACAATAATACATATTTCATTTTTATTTTT
AATTACTATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTA
ACAATATGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACG
AAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATCAAATACCAATTTAA
ATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAACCAATGGTTCAACAC
CAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTCTGCAGAGGAGCTTG
AAAAACAAAAGAAAGAAGAGGACGAAAAAAGAAAGAAATCAGAATTGGAGGCTGCTGCAG
CCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGAACAAGTTGAACTTG
AAAGAAAAAGACGTGACGAANNNNNNNNNN

>CHS105Z.Seq
NNNNNNNNNNGTCAACAATTGGAGCGTCTTATGGCAGAGTTTAAAGCCGTATGTGATAAT
AGTAAAATCTCTGAAGTTAAAATGGATGATATTGCCACCGCAAGTGGTATCAATAAATTA
AATAACATTCCAAATTATGCTTGGGCCGCAAGTGATTTAACTTCACTCATATCAAGAGAT
ACCTTTGTTCCATTGATTGAACAATTGTGTGAACGTGCCATGTACATTATGAAAAGATTA
ACCGATATCGCTGATAAAGTTATCGATAGTCGTAGAAAGAGTCGTTGTATTGGTTCATCA
CCATTTGGCGGTAACGGTTTAAATAATATTAACAGCGGCGGCAATAATGGCATCAACATC
AATGATCGTTTATCAAATACTGATATGGATAGTTTAGATCAATATCCATTCTTTACTCAT
CATGTAAAGAATCTTTATTATGATTTCGTTCATAGAGCTGCCAAAGGTTGTAAAGAGAAA
TGTATGGACGAATTCTATTCTTCAAGAACTATCTATTGGGAATTAACTGAACATCCAGAT
AGTTCATTACCAAGTATTAGAAATGATCATCATGAAACTAAAACTGCTGTTTGTCAATTG
GCTACAAAATTATTTGATTCCATTCGTCAAAGAATCACTAAAAATGTTTTATTAAAGTTA
TACAATTTCTTTTTGGTACCAATGCAAACTGACCTTTGGAANAAATTCAAGCTCAAATCA
CTTGTCTCTCAAAGAACAATGGAACAACTCTTT

>CHS105P.Seq
ATTTATATTTTTAATTTTATAAAATTAAAAAAAAAAATTTTTAAAAAATTATAGTTTTAC
TATAACATAAAACAAAACTACAAATATAACAACAATAATACATATTTCATTTTTATTTTT
AATTACTATTACAATTTTTTTTAAAATCAATACCTCAATTACTATTACTCAATTAAAGTA
ACAATATGTCTGTATTCAAGAAAAAAGATAAATCTGATGACAAAAAGAAAAAACATGACG
AAGAGACTCCACAAGGAACATTTCAACCAGCAAGTCAATCAACATCAAATACCAATTTAA
ATTCATTAGCATCATCAGTTAACAATGGTGCAAGTGTAGGTTCAACCAATGGTTCAACAC
CAAATAATTCCAATGGATCAACACCAACCTATAATCATAACAACTCTGCAGAGGAGCTTG
AAAAACAAAAGAAAGAAGAGGACGAAAAAAGAAAGAAATCAGAATTGGAGGCTGCTGCAG
CCGTAGTTGCTAAAAAGAAAGAAGATGAAGAGAAACAAAGAAAAGAACAAGTTGAACTTG
AAAGAAAAAGACGTGACGAA----------GTCAACAATTGGAGCGTCTTATGGCAGAGT
TTAAAGCCGTATGTGATAATAGTAAAATCTCTGAAGTTAAAATGGATGATATTGCCACCG
CAAGTGGTATCAATAAATTAAATAACATTCCAAATTATGCTTGGGCCGCAAGTGATTTAA
CTTCACTCATATCAAGAGATACCTTTGTTCCATTGATTGAACAATTGTGTGAACGTGCCA
TGTACATTATGAAAAGATTAACCGATATCGCTGATAAAGTTATCGATAGTCGTAGAAAGA
GTCGTTGTATTGGTTCATCACCATTTGGCGGTAACGGTTTAAATAATATTAACAGCGGCG
GCAATAATGGCATCAACATCAATGATCGTTTATCAAATACTGATATGGATAGTTTAGATC
AATATCCATTCTTTACTCATCATGTAAAGAATCTTTATTATGATTTCGTTCATAGAGCTG
CCAAAGGTTGTAAAGAGAAATGTATGGACGAATTCTATTCTTCAAGAACTATCTATTGGG
AATTAACTGAACATCCAGATAGTTCATTACCAAGTATTAGAAATGATCATCATGAAACTA
AAACTGCTGTTTGTCAATTGGCTACAAAATTATTTGATTCCATTCGTCAAAGAATCACTA
AAAATGTTTTATTAAAGTTATACAATTTCTTTTTGGTACCAATGCAAACTGACCTTTGGA
ANAAATTCAAGCTCAAATCACTTGTCTCTCAAAGAACAATGGAACAACTCTTT