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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHS104
Library CH
(Link to library)
Clone ID CHS104
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CHS104P
(Link to Original site)
Representative DNA sequence 
>CHS104 (CHS104Q) /CSM/CH/CHS1-A/CHS104Q.Seq.d/
TAGATGCTTCAAAATCTTTTGATCCAACAACTACTTCAACAGTTTCCAAAGAACTTGATG
ATTCAACCTCTACACAACAACAATCATTTACTTATGCATGGAGATGTATCAATAAAAGTG
GCAAAGATTGCGGATTAAATTTAGAATCTGAACCAATTATTACATTTAACTCTTCAAGAT
TGAATGTTGGTGTTTTCCATTTCTCTGTTGATGTTACCCCAAATGGTGATGCCACAAGAA
GTGGTTCTGCTAGTGCCACTGTTACCATTGTAAATACTCCAGTAATTGATGTTATTATCT
CACCATTACCAACAACCATTGATCCAACTCAAAAATTGGTACTCTATACAGTAGTTAGTG
GTAATGATGCATCTTCATCAAATTTAACCTATGAATGGAATATGCTCGAAGGTACTCTTG
AACTTCCATTAAAACAAGCCTATAGTACCCCAATGAATAGTAGAAATTTGGTATTAAAGG
CTGGTGCACTCGGTTCAAAAGTTGTCTATAGATTTTCAGTAGATGTTAAAAATAAGAAAA
CTGGTGCCACTGGTAAAGCAATGGTAACATTCACCACTGAAGCAATCCCCCAAGGTGGTG
ATATCACTTGTTTAACAACAAGTXXXXXXXXXXGTATTCTTCAAAGAACTGCAATTGGTG
AAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCTAC
ATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAAT
CTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTAT
CAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAA
ATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAAC
TTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATA
TGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATA
AAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTA
AATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTT
GGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTG
TTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGNAACAAANCAAAGTAAAACCAA
sequence update 2002.10.25
Translated Amino Acid sequence 
DASKSFDPTTTSTVSKELDDSTSTQQQSFTYAWRCINKSGKDCGLNLESEPIITFNSSRL
NVGVFHFSVDVTPNGDATRSGSASATVTIVNTPVIDVIISPLPTTIDPTQKLVLYTVVSG
NDASSSNLTYEWNMLEGTLELPLKQAYSTPMNSRNLVLKAGALGSKVVYRFSVDVKNKKT
GATGKAMVTFTTEAIPQGGDITCLTTS---

---ILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKDDEGQSLDGEKLAF
TPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKTVSLELFNGGSQLS
INGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDGNIQCKCNHLTEFG
LIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKXQXKVKP
Translated Amino Acid sequence (All Frames) 
Frame A:
*mlqnlliqqllqqfpknlmiqplhnnnhllmhgdvsikvakiad*i*nlnqllhltlqd
*mlvfsisllmlpqmvmpqevvllvpllpl*ilq*lmllshhyqqpliqlknwysiq*lv
vmmhlhqi*pmngicskvllnfh*nkpivpq*iveiwy*rlvhsvqklsidfq*mlkirk
lvplvkqw*hsplkqspkvvislv*qq---

---vffkelqlvknhlqlqvikvsrlqhlklyiwn*vrvvnrlvskrmmkvnllmvknll
slqnsvfhqvfyqrin*nkplkslvn*lqfhqifisiinlikpfsqklfhlnfsmvalny
qsmalkiklsliwenihhqkiknlnvvggapikkng*qmvvqpik*mvifnvnvtilqsl
v*lnlqnplktfgslldq*lvvlylqlqwlvllyw*rerktktkxnkxk*nq

Frame B:
rcfkif*snnyfnsfqrt**fnlytttiiylcmemyq*kwqrlrikfri*tnyyi*lfki
ecwcfpflc*cypkw*chkkwfc*chcyhckyssn*cyyltitnnh*snskigtlyss*w
**cifikfnl*meyarrys*tsiktsl*ypne**kfgikgwctrfkscl*ifsrc*k*en
wchw*sngnihh*snpprw*yhlfnnk---

---ysskncnw*rtiysck**rfldyni*nstygik*ewsidwfqkg**rsis*w*ktcf
hskiqysikcfike*iktnl*nhw*tnyssikysfqs*i*snhfpkncft*tfqwwlsii
nqwp*rsnyh*ygktfttkr*ri*mwlvelq*krmvnrwlfnp*srw*ysm*m*psyrvw
fn*ickilskhldhywtsswwccicscngwyccigkekekqkqkxtxqskt

Frame C:
DASKSFDPTTTSTVSKELDDSTSTQQQSFTYAWRCINKSGKDCGLNLESEPIITFNSSRL
NVGVFHFSVDVTPNGDATRSGSASATVTIVNTPVIDVIISPLPTTIDPTQKLVLYTVVSG
NDASSSNLTYEWNMLEGTLELPLKQAYSTPMNSRNLVLKAGALGSKVVYRFSVDVKNKKT
GATGKAMVTFTTEAIPQGGDITCLTTS---

---ILQRTAIGEEPFTVASDKGFSITTFKTLHMELSKSGQSIGFKKDDEGQSLDGEKLAF
TPKFSIPSSVLSKNKLKQTSEITGKLITVPSNIHFNHKSDQTIFPKTVSLELFNGGSQLS
INGLKDQIIIDMGKHSPPKDKEFKCGWWSSNKKEWLTDGCSTHKVDGNIQCKCNHLTEFG
LIEFAKSSQNIWIIIGPVVGGVVFAAAMVGTVVLVKRKKNKNKKXQXKVKP
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS104 (CHS104Q) /CSM/CH/CHS1-A/CHS104Q.Seq.d/                       2478   0.0
SHL489 (SHL489Q) /CSM/SH/SHL4-D/SHL489Q.Seq.d/                       1283   0.0
SHL119 (SHL119Q) /CSM/SH/SHL1-A/SHL119Q.Seq.d/                       1283   0.0
SHK593 (SHK593Q) /CSM/SH/SHK5-D/SHK593Q.Seq.d/                       1283   0.0
SHJ824 (SHJ824Q) /CSM/SH/SHJ8-A/SHJ824Q.Seq.d/                       1283   0.0
SHG125 (SHG125Q) /CSM/SH/SHG1-B/SHG125Q.Seq.d/                       1283   0.0
SHD762 (SHD762Q) /CSM/SH/SHD7-C/SHD762Q.Seq.d/                       1283   0.0
SHD428 (SHD428Q) /CSM/SH/SHD4-B/SHD428Q.Seq.d/                       1283   0.0
SHD253 (SHD253Q) /CSM/SH/SHD2-C/SHD253Q.Seq.d/                       1283   0.0
SHB414 (SHB414Q) /CSM/SH/SHB4-A/SHB414Q.Seq.d/                       1283   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC122311|AC122311.6 Mus musculus BAC clone RP23-298B23 from chromosome 6, complete sequence.    42   0.22   4
CK580072|CK580072.1 IST_WI5_26979 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.47   1
CK580064|CK580064.1 IST_WI5_26968 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.47   1
CK579939|CK579939.1 IST_WI5_26789 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.47   1
CK579682|CK579682.1 IST_WI5_25671 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.47   1
CK577635|CK577635.1 IST_WI5_17633 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.47   1
AC024453|AC024453.2 Homo sapiens chromosome 4 clone RP11-2B17 map 4, WORKING DRAFT SEQUENCE, 51 unordered pieces.    48   0.47   1
CK577615|CK577615.1 IST_WI5_17612 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to F54B11.3, mRNA sequence.    48   0.47   1
AC013774|AC013774.3 Homo sapiens clone RP11-10P1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48   0.47   1
Z70208|Z70208.1 Caenorhabditis elegans Cosmid F54B11.              48   0.47   1
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK154648_1(AK154648|pid:none) Mus musculus NOD-derived CD11c +ve...    50   2e-04
(Q8R0T6) RecName: Full=Probable G-protein coupled receptor 97; F...    50   2e-04
AK037149_1(AK037149|pid:none) Mus musculus 6 days neonate skin c...    50   2e-04
AB041939_1(AB041939|pid:none) Homo sapiens KPG_006 mRNA for G-pr...    50   2e-04
AF216967_1(AF216967|pid:none) Homo sapiens putative vascular ind...    48   7e-04
(Q8K3V3) RecName: Full=G-protein coupled receptor 56; Flags: Pre...    47   0.002
CP000444_2866(CP000444|pid:none) Shewanella sp. MR-7, complete g...    46   0.002
AK295345_1(AK295345|pid:none) Homo sapiens cDNA FLJ55998 complet...    46   0.003
(Q8CJ11) RecName: Full=G-protein coupled receptor 64; AltName: F...    45   0.004
AF538959_1(AF538959|pid:none) Rattus norvegicus Re6 receptor spl...    45   0.004
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.22  top: 1.10  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for CHS104 is cyt
5' end seq. ID CHS104F
5' end seq. 
>CHS104F.Seq
TAGATGCTTCAAAATCTTTTGATCCAACAACTACTTCAACAGTTTCCAAAGAACTTGATG
ATTCAACCTCTACACAACAACAATCATTTACTTATGCATGGAGATGTATCAATAAAAGTG
GCAAAGATTGCGGATTAAATTTAGAATCTGAACCAATTATTACATTTAACTCTTCAAGAT
TGAATGTTGGTGTTTTCCATTTCTCTGTTGATGTTACCCCAAATGGTGATGCCACAAGAA
GTGGTTCTGCTAGTGCCACTGTTACCATTGTAAATACTCCAGTAATTGATGTTATTATCT
CACCATTACCAACAACCATTGATCCAACTCAAAAATTGGTACTCTATACAGTAGTTAGTG
GTAATGATGCATCTTCATCAAATTTAACCTATGAATGGAATATGCTCGAAGGTACTCTTG
AACTTCCATTAAAACAAGCCTATAGTACCCCAATGAATAGTAGAAATTTGGTATTAAAGG
CTGGTGCACTCGGTTCAAAAGTTGTCTATAGATTTTCAGTAGATGTTAAAAATAAGAAAA
CTGGTGCCACTGGTAAAGCAATGGTAACATTCACCACTGAAGCAATCCCCCAAGGTGGTG
ATATCACTTGTTTAACAACAAGTNNNNNNNNNN
Length of 5' end seq. 633
3' end seq. ID CHS104Z
3' end seq. 
>CHS104Z.Seq
NNNNNNNNNNGTATTCTTCAAAGAACTGCAATTGGTGAAGAACCATTTACAGTTGCAAGT
GATAAAGGTTTCTCGATTACAACATTTAAAACTCTACATATGGAATTAAGTAAGAGTGGT
CAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAATCTCTTGATGGTGAAAAACTTGCT
TTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTATCAAAGAATAAATTAAAACAAACC
TCTGAAATCACTGGTAAACTAATTACAGTTCCATCAAATATTCATTTCAATCATAAATCT
GATCAAACCATTTTCCCAAAAACTGTTTCACTTGAACTTTTCAATGGTGGCTCTCAATTA
TCAATCAATGGCCTTAAAGATCAAATTATCATTGATATGGGAAAACATTCACCACCAAAA
GATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATAAAAAAGAATGGTTAACAGATGGT
TGTTCAACCCATAAAGTAGATGGTAATATTCAATGTAAATGTAACCATCTTACAGAGTTT
GGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTTGGATCATTATTGGACCAGTAGTT
GGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTGTTGTATTGGTAAAGAGAAAGAAA
AACAAAAACAAAAAGNAACAAANCAAAGTAAAACCAA
Length of 3' end seq. 697
Connected seq. ID CHS104P
Connected seq. 
>CHS104P.Seq
TAGATGCTTCAAAATCTTTTGATCCAACAACTACTTCAACAGTTTCCAAAGAACTTGATG
ATTCAACCTCTACACAACAACAATCATTTACTTATGCATGGAGATGTATCAATAAAAGTG
GCAAAGATTGCGGATTAAATTTAGAATCTGAACCAATTATTACATTTAACTCTTCAAGAT
TGAATGTTGGTGTTTTCCATTTCTCTGTTGATGTTACCCCAAATGGTGATGCCACAAGAA
GTGGTTCTGCTAGTGCCACTGTTACCATTGTAAATACTCCAGTAATTGATGTTATTATCT
CACCATTACCAACAACCATTGATCCAACTCAAAAATTGGTACTCTATACAGTAGTTAGTG
GTAATGATGCATCTTCATCAAATTTAACCTATGAATGGAATATGCTCGAAGGTACTCTTG
AACTTCCATTAAAACAAGCCTATAGTACCCCAATGAATAGTAGAAATTTGGTATTAAAGG
CTGGTGCACTCGGTTCAAAAGTTGTCTATAGATTTTCAGTAGATGTTAAAAATAAGAAAA
CTGGTGCCACTGGTAAAGCAATGGTAACATTCACCACTGAAGCAATCCCCCAAGGTGGTG
ATATCACTTGTTTAACAACAAGT----------GTATTCTTCAAAGAACTGCAATTGGTG
AAGAACCATTTACAGTTGCAAGTGATAAAGGTTTCTCGATTACAACATTTAAAACTCTAC
ATATGGAATTAAGTAAGAGTGGTCAATCGATTGGTTTCAAAAAGGATGATGAAGGTCAAT
CTCTTGATGGTGAAAAACTTGCTTTCACTCCAAAATTCAGTATTCCATCAAGTGTTTTAT
CAAAGAATAAATTAAAACAAACCTCTGAAATCACTGGTAAACTAATTACAGTTCCATCAA
ATATTCATTTCAATCATAAATCTGATCAAACCATTTTCCCAAAAACTGTTTCACTTGAAC
TTTTCAATGGTGGCTCTCAATTATCAATCAATGGCCTTAAAGATCAAATTATCATTGATA
TGGGAAAACATTCACCACCAAAAGATAAAGAATTTAAATGTGGTTGGTGGAGCTCCAATA
AAAAAGAATGGTTAACAGATGGTTGTTCAACCCATAAAGTAGATGGTAATATTCAATGTA
AATGTAACCATCTTACAGAGTTTGGTTTAATTGAATTTGCAAAATCCTCTCAAAACATTT
GGATCATTATTGGACCAGTAGTTGGTGGTGTTGTATTTGCAGCTGCAATGGTTGGTACTG
TTGTATTGGTAAAGAGAAAGAAAAACAAAAACAAAAAGNAACAAANCAAAGTAAAACCAA
Length of connected seq. 1310
Full length Seq ID -
Full length Seq. -
Length of full length seq. -