>CHS102 (CHS102Q) /CSM/CH/CHS1-A/CHS102Q.Seq.d/
TTGGCCTACTGGAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAAT
AAGGAATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACG
TATACATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAA
GAAAAAAAAAAXXXXXXXXXX

laywkniqlsnnnnknnnnnkel*SNNNIAIIYNYYSKITYTYINNYYYHCF*k*ink**
ekk---

Frame A:
laywkniqlsnnnnknnnnnkel*SNNNIAIIYNYYSKITYTYINNYYYHCF*k*ink**
ekk---


Frame B:
wptgkifnsviiiikiitiirnynqiii*l*siitivklrihi*iiiiiivfknk*innk
kkk---


Frame C:
gllekystq*****k**q**giiik**ysynl*ll**nyvyiyk*lllslflkink*iir
kk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHS102 (CHS102Q) /CSM/CH/CHS1-A/CHS102Q.Seq.d/                        170   5e-42
SLF677 (SLF677Q) /CSM/SL/SLF6-D/SLF677Q.Seq.d/                        168   2e-41
SHK252 (SHK252Q) /CSM/SH/SHK2-C/SHK252Q.Seq.d/                        168   2e-41
SHK107 (SHK107Q) /CSM/SH/SHK1-A/SHK107Q.Seq.d/                        168   2e-41
SHI766 (SHI766Q) /CSM/SH/SHI7-C/SHI766Q.Seq.d/                        168   2e-41
SHI265 (SHI265Q) /CSM/SH/SHI2-C/SHI265Q.Seq.d/                        168   2e-41
SHH479 (SHH479Q) /CSM/SH/SHH4-D/SHH479Q.Seq.d/                        168   2e-41
SHC473 (SHC473Q) /CSM/SH/SHC4-D/SHC473Q.Seq.d/                        168   2e-41
SFK542 (SFK542Q) /CSM/SF/SFK5-B/SFK542Q.Seq.d/                        168   2e-41
SFJ657 (SFJ657Q) /CSM/SF/SFJ6-C/SFJ657Q.Seq.d/                        168   2e-41

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M34548|M34548.1 D.discoideum spore coat 96 (sp96) gene, 5' flank.   168   2e-41  2
S96842|S96842.1 SP96=spore-coat protein {5' region} [Dictyostelium discoideum, prespore cells, Genomic, 2305 nt].   168   6e-41  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   168   3e-38  1
AL034559|AL034559.4 Plasmodium falciparum MAL3P7.                  44   2e-07  3
AC116922|AC116922.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.    64   1e-06  1
BX140923|BX140923.1 Danio rerio genomic clone DKEY-99F20, genomic survey sequence.    48   4e-06  2
AC094085|AC094085.3 Homo sapiens chromosome 5 clone CTD-2110K23, complete sequence.    42   6e-06  4
AE014816|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence.    48   1e-05  5
AL356983|AL356983.33 Human DNA sequence from clone RP3-441G21 on chromosome 6.    46   1e-05  2
AC144979|AC144979.1 Silurana tropicalis clone ISB-59P16, WORKING DRAFT SEQUENCE, 10 unordered pieces.    52   2e-05  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 93,130,889

 psg: 0.80  gvh: 0.05  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for CHS102 is nuc

>CHS102F.Seq
TTGGCCTACTGGAAAAATATTCAACTCAGTAATAATAATAATAAAAATAATAACAATAAT
AAGGAATTATAATCAAATAATAATATAGCTATAATCTATAATTACTATAGTAAAATTACG
TATACATATATAAATAATTATTATTATCATTGTTTTTAAAAATAAATAAATAAATAATAA
GAAAAAAAAAANNNNNNNNNN