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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CHR888
Library CH
(Link to library)
Clone ID CHR888
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16292-1|Contig-U16400-1
Original site URL
Representative seq. ID CHR888P
(Link to Original site)
Representative DNA sequence 
>CHR888 (CHR888Q) /CSM/CH/CHR8-D/CHR888Q.Seq.d/
AAATCCCAGGTGTGTTCACAAAAATAACAACAACACTAAAAAAAGTCTTCATTGTTTTTT
ACTTTTTTTTTTAATTTTTAATTTTTTATTTAATTTAAACAATATATAAATCAATTAAAA
TAAACACTCACTCGATAGNGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAANTTTTTTTNAAAAAAAAAXXXXXXXXXXTTGGATGCATTAGATAAA
ATCAAACAATCAGCAGTGGCATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCAT
TGTGGTTATTTGGCTGCAATGAGTTCTTTAACNTCAGGTGCTGAACGTTCATATATAATG
GAAAGAGGTATCACATTGAATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTC
AAACGTGAACATAGAATTGGTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCA
ACTCATTTCATTTATTCACTCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAA
TCTATACTCGGTCATTTACAACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCA
ACTCGTTTAATGAATCATTATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCAT
CTTCAAATGAATGGTTGTATTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAA
GAAATGATCGAAGAAATGTCTG
sequence update 2002.10.25
Translated Amino Acid sequence 
nprcvhknnnntkkslhcfllfflifnflfnlnni*in*NKHSLDXVKEKKKKKKKKKKK
KKKKXFFXKK---

---LDALDKIKQSAVASRRLFVVEVMGAHCGYLAAMSSLTSGAERSYIMERGITLNTLTK
DLEMFVERFKREHRIGLIIKSELASNTYSTHFIYSLFKEEGKHLFDVRESILGHLQQGGT
PSAIDRIFSTRLMNHYYQFLENDLKEHGHLQMNGCIGFIDGGIHYTPMQEMIEEMS
Translated Amino Acid sequence (All Frames) 
Frame A:
ksqvcsqk*qqh*kksslfftfffnf*ffi*fkqyinqlk*tltr*xkrkkkkkkkkkkk
kkkkxffxkk---

---LDALDKIKQSAVASRRLFVVEVMGAHCGYLAAMSSLTSGAERSYIMERGITLNTLTK
DLEMFVERFKREHRIGLIIKSELASNTYSTHFIYSLFKEEGKHLFDVRESILGHLQQGGT
PSAIDRIFSTRLMNHYYQFLENDLKEHGHLQMNGCIGFIDGGIHYTPMQEMIEEMS

Frame B:
nprcvhknnnntkkslhcfllfflifnflfnlnni*in*NKHSLDXVKEKKKKKKKKKKK
KKKKXFFXKK---

---wmh*iksnnqqwhhvvysswrswvpivviwlq*vl*xqvlnvhi*wkevsh*ih*pr
iwkcllnvsnvnielv*llrvnllatptqlisfihsskkkvniysmsvnlysviynkvvl
llqlivsfqlv**iiiinswktisknmvifk*mvvlvslmvvfitlqckk*skkcl

Frame C:
ipgvftkitttlkkvfivfyfff*flifyli*tiyksikinthsix*kkkkkkkkkkkkk
kkkkxfxkkk---

---gcir*nqtissgitsfirrgghgcplwlfgcneffnxrc*tfiyngkryhieytnqg
fgnvc*tfqt*t*nwsny*e*tc*qhllnsfhlftlqrrr*tfircp*iytrsfttrwys
fcn*sylfnsfnesllsilgkrsqrtwsssnewlywfh*wwyslhsnarndrrnv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHD874 (VHD874Q) /CSM/VH/VHD8-D/VHD874Q.Seq.d/                       1025   0.0
VHO736 (VHO736Q) /CSM/VH/VHO7-B/VHO736Q.Seq.d/                       1025   0.0
VHM459 (VHM459Q) /CSM/VH/VHM4-C/VHM459Q.Seq.d/                       1025   0.0
VHK293 (VHK293Q) /CSM/VH/VHK2-D/VHK293Q.Seq.d/                       1025   0.0
VHJ854 (VHJ854Q) /CSM/VH/VHJ8-C/VHJ854Q.Seq.d/                       1025   0.0
VHI735 (VHI735Q) /CSM/VH/VHI7-B/VHI735Q.Seq.d/                       1025   0.0
VHI548 (VHI548Q) /CSM/VH/VHI5-B/VHI548Q.Seq.d/                       1025   0.0
VHE233 (VHE233Q) /CSM/VH/VHE2-B/VHE233Q.Seq.d/                       1025   0.0
VHD874 (VHD874Q) /CSM/VH/VHD8-D/VHD874Q.Seq.d/                       1025   0.0
VHD226 (VHD226Q) /CSM/VH/VHD2-B/VHD226Q.Seq.d/                       1025   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.  1025   0.0    3
X94340|X94340.1 D.discoideum mRNA for 6-phosphofructo-1-kinase.  1025   0.0    1
X89039|X89039.1 D.discoideum mRNA for 6-phosphofructo-1-kinase.  1025   0.0    1
AJ430522|AJ430522.1 Dictyostelium discoideum partial pfk gene for ATP:D-fructose  6-phosphate 1-phosphofructokinase, exon 1.    94   4e-29  2
CE635221|CE635221.1 tigr-gss-dog-17000366743799 Dog Library Canis familiaris genomic, genomic survey sequence.    46   1.0    1
BZ298846|BZ298846.1 CG4616.f1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG4616, DNA sequence.    46   1.0    1
BZ297417|BZ297417.1 CG3420.r1 Candida glabrata Random Genomic Library Candida glabrata genomic clone CG3420, DNA sequence.    46   1.0    1
CR380955|CR380955.1 Candida glabrata strain CBS138 chromosome I complete sequence.    46   1.0    1
U97104|U97104.1 Bactrocera tryoni membrane transporter (white) gene, complete cds.    46   1.0    1
AC117993|AC117993.1 Ciona savignyi clone -1E4, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    36   3.5    4
dna update 2005.11.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P90521) RecName: Full=6-phosphofructokinase;          Short=Pho...   348   1e-94
CP001337_2617(CP001337|pid:none) Chloroflexus aggregans DSM 9485...   160   3e-38
BC081652_1(BC081652|pid:none) Danio rerio phosphofructokinase, m...   136   6e-31
AE017283_2204(AE017283|pid:none) Propionibacterium acnes KPA1712...   135   1e-30
(Q867C9) RecName: Full=6-phosphofructokinase, muscle type;      ...   132   1e-29
A53206(A53206;S03880)6-phosphofructokinase (EC 2.7.1.11) C - rab...   132   1e-29
DQ480147_1(DQ480147|pid:none) Sus scrofa muscle 6-phosphofructok...   130   3e-29
BC077756_1(BC077756|pid:none) Xenopus laevis MGC79063 protein, m...   130   3e-29
BC057710_1(BC057710|pid:none) Xenopus laevis hypothetical protei...   130   3e-29
(P47859) RecName: Full=6-phosphofructokinase type C;          EC...   130   3e-29
protein update 2009. 4.13
PSORT 

 psg: 0.03  gvh: 0.47  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.55  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: cytoplasmic

>> prediction for CHR888 is nuc
5' end seq. ID CHR888F
5' end seq. 
>CHR888F.Seq
AAATCCCAGGTGTGTTCACAAAAATAACAACAACACTAAAAAAAGTCTTCATTGTTTTTT
ACTTTTTTTTTTAATTTTTAATTTTTTATTTAATTTAAACAATATATAAATCAATTAAAA
TAAACACTCACTCGATAGNGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAANTTTTTTTNAAAAAAAAANNNNNNNNNN
Length of 5' end seq. 222
3' end seq. ID CHR888Z
3' end seq. 
>CHR888Z.Seq
NNNNNNNNNNTTGGATGCATTAGATAAAATCAAACAATCAGCAGTGGCATCACGTCGTTT
ATTCGTCGTGGAGGTCATGGGTGCCCATTGTGGTTATTTGGCTGCAATGAGTTCTTTAAC
NTCAGGTGCTGAACGTTCATATATAATGGAAAGAGGTATCACATTGAATACACTAACCAA
GGATTTGGAAATGTTTGTTGAACGTTTCAAACGTGAACATAGAATTGGTCTAATTATTAA
GAGTGAACTTGCTAGCAACACCTACTCAACTCATTTCATTTATTCACTCTTCAAAGAAGA
AGGTAAACATTTATTCGATGTCCGTGAATCTATACTCGGTCATTTACAACAAGGTGGTAC
TCCTTCTGCAATTGATCGTATCTTTTCAACTCGTTTAATGAATCATTATTATCAATTCTT
GGAAAACGATCTCAAAGAACATGGTCATCTTCAAATGAATGGTTGTATTGGTTTCATTGA
TGGTGGTATTCATTACACTCCAATGCAAGAAATGATCGAAGAAATGTCTG
Length of 3' end seq. 530
Connected seq. ID CHR888P
Connected seq. 
>CHR888P.Seq
AAATCCCAGGTGTGTTCACAAAAATAACAACAACACTAAAAAAAGTCTTCATTGTTTTTT
ACTTTTTTTTTTAATTTTTAATTTTTTATTTAATTTAAACAATATATAAATCAATTAAAA
TAAACACTCACTCGATAGNGTAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAANTTTTTTTNAAAAAAAAA----------TTGGATGCATTAGATAAA
ATCAAACAATCAGCAGTGGCATCACGTCGTTTATTCGTCGTGGAGGTCATGGGTGCCCAT
TGTGGTTATTTGGCTGCAATGAGTTCTTTAACNTCAGGTGCTGAACGTTCATATATAATG
GAAAGAGGTATCACATTGAATACACTAACCAAGGATTTGGAAATGTTTGTTGAACGTTTC
AAACGTGAACATAGAATTGGTCTAATTATTAAGAGTGAACTTGCTAGCAACACCTACTCA
ACTCATTTCATTTATTCACTCTTCAAAGAAGAAGGTAAACATTTATTCGATGTCCGTGAA
TCTATACTCGGTCATTTACAACAAGGTGGTACTCCTTCTGCAATTGATCGTATCTTTTCA
ACTCGTTTAATGAATCATTATTATCAATTCTTGGAAAACGATCTCAAAGAACATGGTCAT
CTTCAAATGAATGGTTGTATTGGTTTCATTGATGGTGGTATTCATTACACTCCAATGCAA
GAAATGATCGAAGAAATGTCTG
Length of connected seq. 732
Full length Seq ID -
Full length Seq. -
Length of full length seq. -